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Volumn 23, Issue 11, 2006, Pages 2112-2122

Impact of the excision of an ancient repeat insertion on Rickettsia conorii guanylate kinase activity

Author keywords

Enzyme fitness; Guanylate kinase; Palindromic coding repeat; Recombinant protein expression; Rickettsia conorii

Indexed keywords

ADENOSINE TRIPHOSPHATE; GENE PRODUCT; GUANOSINE PHOSPHATE; GUANYLATE KINASE; MESSENGER RNA; PALINDROMIC DNA; PROTEIN GMK; RECOMBINANT PROTEIN; UNCLASSIFIED DRUG;

EID: 33749576307     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msl082     Document Type: Article
Times cited : (11)

References (44)
  • 1
    • 0033062804 scopus 로고    scopus 로고
    • Gene synthesis, bacterial expression and purification of the Rickettsia prowazekii ATP/ADP translocase
    • Alexeyev MF, Winkler HH. 1999. Gene synthesis, bacterial expression and purification of the Rickettsia prowazekii ATP/ADP translocase. Biochim Biophys Acta 1419:299-306.
    • (1999) Biochim Biophys Acta , vol.1419 , pp. 299-306
    • Alexeyev, M.F.1    Winkler, H.H.2
  • 3
    • 0036667684 scopus 로고    scopus 로고
    • Proliferation and deterioration of Rickettsia palindromic elements
    • Amiri H, Alsmark CM, Andersson SG. 2002. Proliferation and deterioration of Rickettsia palindromic elements. Mol Biol Evol 19:1234-43.
    • (2002) Mol Biol Evol , vol.19 , pp. 1234-1243
    • Amiri, H.1    Alsmark, C.M.2    Andersson, S.G.3
  • 4
    • 0142222533 scopus 로고    scopus 로고
    • Birth and death of orphan genes in Rickettsia
    • Amiri H, Davids W, Andersson SG. 2003. Birth and death of orphan genes in Rickettsia. Mol Biol Evol 20:1575-87.
    • (2003) Mol Biol Evol , vol.20 , pp. 1575-1587
    • Amiri, H.1    Davids, W.2    Andersson, S.G.3
  • 6
    • 32444444701 scopus 로고    scopus 로고
    • Transposable elements have contributed to thousands of human proteins
    • Britten R. 2006. Transposable elements have contributed to thousands of human proteins. Proc Natl Acad Sci USA 103:1798-1803.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 1798-1803
    • Britten, R.1
  • 7
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540-52.
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 8
    • 0037311448 scopus 로고    scopus 로고
    • The insertion of palindromic repeats in the evolution of proteins
    • Claverie JM, Ogata H. 2003. The insertion of palindromic repeats in the evolution of proteins. Trends Biochem Sci 28:75-80.
    • (2003) Trends Biochem Sci , vol.28 , pp. 75-80
    • Claverie, J.M.1    Ogata, H.2
  • 9
    • 0030663025 scopus 로고    scopus 로고
    • Increased and controlled expression of the Rickettsia prowazekii ATP/ADP translocase and analysis of cysteine-less mutant translocase
    • Dunbar SA, Winkler HH. 1997. Increased and controlled expression of the Rickettsia prowazekii ATP/ADP translocase and analysis of cysteine-less mutant translocase. Microbiology 143(Pt 11):3661-9.
    • (1997) Microbiology , vol.143 , Issue.PART 11 , pp. 3661-3669
    • Dunbar, S.A.1    Winkler, H.H.2
  • 10
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: A multiple sequence alignment method with reduced time and space complexity
    • Edgar RC. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113.
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 11
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-76.
    • (1981) J Mol Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 12
    • 0034104172 scopus 로고    scopus 로고
    • Adventures with poxviruses of vertebrates
    • Fenner F. 2000. Adventures with poxviruses of vertebrates. FEMS Microbiol Rev 24:123-33.
    • (2000) FEMS Microbiol Rev , vol.24 , pp. 123-133
    • Fenner, F.1
  • 13
    • 21144432943 scopus 로고    scopus 로고
    • The Wolbachia genome of Brugia malayi: Endosymbiont evolution within a human pathogenic nematode
    • Foster J, Ganatra M, Kamal I, et al. (26 co-authors). 2005. The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode. PLoS Biol 3:e121.
    • (2005) PLoS Biol , vol.3
    • Foster, J.1    Ganatra, M.2    Kamal, I.3
  • 14
    • 0030807655 scopus 로고    scopus 로고
    • BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data
    • Gascuel O. 1997. BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol Evol 14:685-95.
    • (1997) Mol Biol Evol , vol.14 , pp. 685-695
    • Gascuel, O.1
  • 16
    • 0024448151 scopus 로고
    • Calculation of protein extinction coefficients from amino acid sequence data
    • Gill SC, von Hippel PH. 1989. Calculation of protein extinction coefficients from amino acid sequence data. Anal Biochem 182:319-26
    • (1989) Anal Biochem , vol.182 , pp. 319-326
    • Gill, S.C.1    Von Hippel, P.H.2
  • 17
    • 0025005374 scopus 로고
    • erratum
    • [erratum in Anal Biochem 1990, 189:283].
    • (1990) Anal Biochem , vol.189 , pp. 283
  • 18
    • 0037128936 scopus 로고    scopus 로고
    • The Listeria monocytogenes hemolysin has an acidic pH optimum to compartmentalize activity and prevent damage to infected host cells
    • Glomski IJ, Gedde MM, Tsang AW, Swanson JA, Portnoy DA. 2002. The Listeria monocytogenes hemolysin has an acidic pH optimum to compartmentalize activity and prevent damage to infected host cells. J Cell Biol 156:1029-38.
    • (2002) J Cell Biol , vol.156 , pp. 1029-1038
    • Glomski, I.J.1    Gedde, M.M.2    Tsang, A.W.3    Swanson, J.A.4    Portnoy, D.A.5
  • 19
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 21
    • 0003421005 scopus 로고    scopus 로고
    • Sunderland, MA: Sinauer Associates
    • Li WH. 1997. Molecular evolution. Sunderland, MA: Sinauer Associates.
    • (1997) Molecular Evolution
    • Li, W.H.1
  • 22
    • 0029956546 scopus 로고    scopus 로고
    • Kinetic and thermodynamic characterizations of yeast guanylate kinase
    • Li Y, Zhang Y, Yan H. 1996. Kinetic and thermodynamic characterizations of yeast guanylate kinase. J Biol Chem 271:28038-44.
    • (1996) J Biol Chem , vol.271 , pp. 28038-28044
    • Li, Y.1    Zhang, Y.2    Yan, H.3
  • 23
    • 0141442962 scopus 로고    scopus 로고
    • Overcoming the codon bias of E. coli for enhanced protein expression
    • Novy R, Drott D, Yaeger K, Mierendorf R. 2001. Overcoming the codon bias of. E. coli for enhanced protein expression. Innovations 12:1-3.
    • (2001) Innovations , vol.12 , pp. 1-3
    • Novy, R.1    Drott, D.2    Yaeger, K.3    Mierendorf, R.4
  • 24
    • 0036112440 scopus 로고    scopus 로고
    • Protein coding palindromes are a unique but recurrent feature in Rickettsia
    • Ogata H, Audic S, Abergel C, Fournier PE, Claverie JM. 2002. Protein coding palindromes are a unique but recurrent feature in Rickettsia. Genome Res 12:808-16.
    • (2002) Genome Res , vol.12 , pp. 808-816
    • Ogata, H.1    Audic, S.2    Abergel, C.3    Fournier, P.E.4    Claverie, J.M.5
  • 26
    • 0035860458 scopus 로고    scopus 로고
    • Mechanisms of evolution in Rickettsia conorii and R. prowazekii
    • Ogata H, Audic S, Renesto P, et al. (11 co-authors). 2001. Mechanisms of evolution in Rickettsia conorii and R. prowazekii. Science 293:2093-8.
    • (2001) Science , vol.293 , pp. 2093-2098
    • Ogata, H.1    Audic, S.2    Renesto, P.3
  • 29
    • 20344375440 scopus 로고    scopus 로고
    • Discovery of proteincoding palindromic repeats in Wolbachia
    • Ogata H, Suhre K, Claverie JM. 2005. Discovery of proteincoding palindromic repeats in Wolbachia. Trends Microbiol 13:253-5.
    • (2005) Trends Microbiol , vol.13 , pp. 253-255
    • Ogata, H.1    Suhre, K.2    Claverie, J.M.3
  • 30
    • 0027020232 scopus 로고
    • The nearly neutral theory of molecular evolution
    • Ohta T. 1992. The nearly neutral theory of molecular evolution. Annu Rev Ecol Syst 23:263-86.
    • (1992) Annu Rev Ecol Syst , vol.23 , pp. 263-286
    • Ohta, T.1
  • 31
    • 0033782899 scopus 로고    scopus 로고
    • Protein splicing and related forms of protein autoprocessing
    • Paulus H. 2000. Protein splicing and related forms of protein autoprocessing. Annu Rev Biochem 69:447-96.
    • (2000) Annu Rev Biochem , vol.69 , pp. 447-496
    • Paulus, H.1
  • 32
    • 3242878412 scopus 로고    scopus 로고
    • 3DCoffee@igs: A web server for combining sequences and structures into a multiple sequence alignment
    • Poirot O, Suhre K, Abergel C, O'Toole E, Notredame C. 2004. 3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment. Nucleic Acids Res 32:W37-40.
    • (2004) Nucleic Acids Res , vol.32
    • Poirot, O.1    Suhre, K.2    Abergel, C.3    O'Toole, E.4    Notredame, C.5
  • 33
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada D, Crandall KA. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-8.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 34
    • 0030713440 scopus 로고    scopus 로고
    • Rickettsioses as paradigms of new or emerging infectious diseases
    • Raoult D, Roux V. 1997. Rickettsioses as paradigms of new or emerging infectious diseases. Clin Microbiol Rev 10:694-719.
    • (1997) Clin Microbiol Rev , vol.10 , pp. 694-719
    • Raoult, D.1    Roux, V.2
  • 35
    • 0242468462 scopus 로고    scopus 로고
    • Identification and characterization of a phospholipase D-superfamily gene in rickettsiae
    • Renesto P, Dehoux P, Gouin E, Touqui L, Cossart P, Raoult D. 2003. Identification and characterization of a phospholipase D-superfamily gene in rickettsiae. J Infect Dis 188:1276-83.
    • (2003) J Infect Dis , vol.188 , pp. 1276-1283
    • Renesto, P.1    Dehoux, P.2    Gouin, E.3    Touqui, L.4    Cossart, P.5    Raoult, D.6
  • 36
    • 0027136282 scopus 로고
    • Comparative protein modelling by satisfaction of spatial restraints
    • Sali A, Blundell TL. 1993. Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol 234:779-815.
    • (1993) J Mol Biol , vol.234 , pp. 779-815
    • Sali, A.1    Blundell, T.L.2
  • 37
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt HA, Strimmer K, Vingron M, von Haeseler A. 2002. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18:502-4.
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    Von Haeseler, A.4
  • 38
    • 1642581500 scopus 로고    scopus 로고
    • ATP/ADP translocases: A common feature of obligate intracellular amoebal symbionts related to Chlamydiae and Rickettsiae
    • Schmitz-Esser S, Linka N, Collingro A, Beier CL, Neuhaus HE, Wagner M, Horn M. 2004. ATP/ADP translocases: a common feature of obligate intracellular amoebal symbionts related to Chlamydiae and Rickettsiae. J Bacteriol 186:683-91.
    • (2004) J Bacteriol , vol.186 , pp. 683-691
    • Schmitz-Esser, S.1    Linka, N.2    Collingro, A.3    Beier, C.L.4    Neuhaus, H.E.5    Wagner, M.6    Horn, M.7
  • 39
    • 25844441645 scopus 로고    scopus 로고
    • Palindromic repetitive DNA elements with coding potential in Methanocaldococcus jannaschii
    • Suyama M, Lathe WC III, Bork P. 2005. Palindromic repetitive DNA elements with coding potential in Methanocaldococcus jannaschii. FEBS Lett 579:5281-6.
    • (2005) FEBS Lett , vol.579 , pp. 5281-5286
    • Suyama, M.1    Lathe III, W.C.2    Bork, P.3
  • 41
    • 0036847064 scopus 로고    scopus 로고
    • Genome evolution in bacterial endosymbionts of insects
    • Wernegreen JJ. 2002. Genome evolution in bacterial endosymbionts of insects. Nat Rev Genet 3:850-61.
    • (2002) Nat Rev Genet , vol.3 , pp. 850-861
    • Wernegreen, J.J.1
  • 42
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 13:555-6.
    • (1997) Comput Appl Biosci , vol.13 , pp. 555-556
    • Yang, Z.1
  • 43
    • 0031897964 scopus 로고    scopus 로고
    • Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
    • Yang Z. 1998. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol Biol Evol 15:568-573.
    • (1998) Mol Biol Evol , vol.15 , pp. 568-573
    • Yang, Z.1
  • 44
    • 0028820333 scopus 로고
    • A new method of inference of ancestral nucleotide and amino acid sequences
    • Yang Z, Kumar S, Nei M. 1995. A new method of inference of ancestral nucleotide and amino acid sequences. Genetics 141:1641-50.
    • (1995) Genetics , vol.141 , pp. 1641-1650
    • Yang, Z.1    Kumar, S.2    Nei, M.3


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