메뉴 건너뛰기




Volumn 157, Issue 4, 2006, Pages 435-444

EFL GTPase in Cryptomonads and the Distribution of EFL and EF-1α in Chromalveolates

Author keywords

Chromalveolates; cryptomonads; dinoflagellates; lateral gene transfer; translation factor

Indexed keywords

APICOMPLEXA; CHROMALVEOLATA; CILIOPHORA; CRYPTOPHYTA; DINOPHYCEAE; EUKARYOTA; GUILLARDIA THETA; HAPTOPHYCEAE; KARLODINIUM MICRUM; OXYRRHIS MARINA; PERKINSUS MARINUS; RHODOMONAS SALINA; STRAMENOPILES;

EID: 33749447132     PISSN: 14344610     EISSN: 16180941     Source Type: Journal    
DOI: 10.1016/j.protis.2006.06.002     Document Type: Article
Times cited : (24)

References (40)
  • 1
    • 0024711717 scopus 로고
    • Fine structure of Perkinsus atlanticus n. sp. (Apicomplexa, Perkinsea) parasite of the clam Ruditapes decussatus from Portugal
    • Azevedo C. Fine structure of Perkinsus atlanticus n. sp. (Apicomplexa, Perkinsea) parasite of the clam Ruditapes decussatus from Portugal. J Parasitol 75 (1989) 627-635
    • (1989) J Parasitol , vol.75 , pp. 627-635
    • Azevedo, C.1
  • 2
    • 1942444640 scopus 로고    scopus 로고
    • Dinoflagellate expressed sequence tags data indicate massive transfer of chloroplast genes to the nuclear genome
    • Bachvaroff T.R., Concepcion G.T., Rogers C.R., Herman E.M., and Delwiche C.F. Dinoflagellate expressed sequence tags data indicate massive transfer of chloroplast genes to the nuclear genome. Protist 155 (2004) 65-78
    • (2004) Protist , vol.155 , pp. 65-78
    • Bachvaroff, T.R.1    Concepcion, G.T.2    Rogers, C.R.3    Herman, E.M.4    Delwiche, C.F.5
  • 3
    • 0032723027 scopus 로고    scopus 로고
    • A search for the origins of animals and chytrid fungi: comparing and combining molecular data
    • Baldauf S.L. A search for the origins of animals and chytrid fungi: comparing and combining molecular data. Am Nat 154 (1999) S178-S188
    • (1999) Am Nat , vol.154
    • Baldauf, S.L.1
  • 4
    • 0030667683 scopus 로고    scopus 로고
    • Origin and evolution of the slime molds (Mycetozoa)
    • Baldauf S.L., and Doolittle W.F. Origin and evolution of the slime molds (Mycetozoa). Proc Natl Acad Sci USA 94 (1997) 12007-12012
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 12007-12012
    • Baldauf, S.L.1    Doolittle, W.F.2
  • 5
    • 0027138675 scopus 로고
    • Animals and chytrid fungi are each other's closest relatives: congruent evidence from multiple proteins
    • Baldauf S.L., and Palmer J.D. Animals and chytrid fungi are each other's closest relatives: congruent evidence from multiple proteins. Proc Natl Acad Sci USA 90 (1993) 11558-11562
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 11558-11562
    • Baldauf, S.L.1    Palmer, J.D.2
  • 6
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • Baldauf S.L., Roger A.J., Wenk-Siefert I., and Doolittle W.F. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290 (2000) 972-977
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 7
    • 0033984609 scopus 로고    scopus 로고
    • Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction
    • Bruno W.J., Socci N.D., and Halpern A.L. Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction. Mol Biol Evol 17 (2000) 189-197
    • (2000) Mol Biol Evol , vol.17 , pp. 189-197
    • Bruno, W.J.1    Socci, N.D.2    Halpern, A.L.3
  • 8
    • 0032838597 scopus 로고    scopus 로고
    • Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree
    • Cavalier-Smith T. Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree. J Eukaryot Microbiol 46 (1999) 347-366
    • (1999) J Eukaryot Microbiol , vol.46 , pp. 347-366
    • Cavalier-Smith, T.1
  • 10
    • 0345512039 scopus 로고
    • Phagotrophy in Oxyrrhis marina Dujardin
    • Droop M.R. Phagotrophy in Oxyrrhis marina Dujardin. Nature 172 (1953) 250-251
    • (1953) Nature , vol.172 , pp. 250-251
    • Droop, M.R.1
  • 11
    • 0035103466 scopus 로고    scopus 로고
    • Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids
    • Fast N.M., Kissinger J.C., Roos D.S., and Keeling P.J. Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids. Mol Biol Evol 18 (2001) 418-426
    • (2001) Mol Biol Evol , vol.18 , pp. 418-426
    • Fast, N.M.1    Kissinger, J.C.2    Roos, D.S.3    Keeling, P.J.4
  • 12
    • 0036124759 scopus 로고    scopus 로고
    • Re-examining alveolate evolution using multiple protein molecular phylogenies
    • Fast N.M., Xue L., Bingham S., and Keeling P.J. Re-examining alveolate evolution using multiple protein molecular phylogenies. J Eukaryot Microbiol 49 (2002) 30-37
    • (2002) J Eukaryot Microbiol , vol.49 , pp. 30-37
    • Fast, N.M.1    Xue, L.2    Bingham, S.3    Keeling, P.J.4
  • 13
    • 0026017244 scopus 로고
    • Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates
    • Gajadhar A.A., Marquardt W.C., Hall R., Gunderson J., Ariztia-Carmona E.V., and Sogin M.L. Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates. Mol Biochem Parasitol 45 (1991) 147-154
    • (1991) Mol Biochem Parasitol , vol.45 , pp. 147-154
    • Gajadhar, A.A.1    Marquardt, W.C.2    Hall, R.3    Gunderson, J.4    Ariztia-Carmona, E.V.5    Sogin, M.L.6
  • 14
    • 0035895207 scopus 로고    scopus 로고
    • Function-structure analysis of proteins using covarion-based evolutionary approaches: elongation factors
    • Gaucher E.A., Miyamoto M.M., and Benner S.A. Function-structure analysis of proteins using covarion-based evolutionary approaches: elongation factors. Proc Natl Acad Sci USA 98 (2001) 548-552
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 548-552
    • Gaucher, E.A.1    Miyamoto, M.M.2    Benner, S.A.3
  • 15
    • 0027200066 scopus 로고
    • Phylogenetic position of the genus Perkinsus (Protista, Apicomplexa) based on small subunit ribosomal RNA
    • Goggin C.L., and Barker S.C. Phylogenetic position of the genus Perkinsus (Protista, Apicomplexa) based on small subunit ribosomal RNA. Mol Biochem Parasitol 60 (1993) 65-70
    • (1993) Mol Biochem Parasitol , vol.60 , pp. 65-70
    • Goggin, C.L.1    Barker, S.C.2
  • 17
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52 (2003) 696-704
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 19
    • 0344440735 scopus 로고    scopus 로고
    • Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids
    • Harper J.T., and Keeling P.J. Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids. Mol Biol Evol 20 (2003) 1730-1735
    • (2003) Mol Biol Evol , vol.20 , pp. 1730-1735
    • Harper, J.T.1    Keeling, P.J.2
  • 20
    • 13244270095 scopus 로고    scopus 로고
    • On the monophyly of the chromalveolates using a six-protein phylogeny of eukaryotes
    • Harper J.T., Waanders E., and Keeling P.J. On the monophyly of the chromalveolates using a six-protein phylogeny of eukaryotes. Int J Syst Evol Microbiol 55 (2005) 487-496
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 487-496
    • Harper, J.T.1    Waanders, E.2    Keeling, P.J.3
  • 21
    • 0037197931 scopus 로고    scopus 로고
    • Lateral transfer of an EF-1alpha gene: origin and evolution of the large subunit of ATP sulfurylase in eubacteria
    • Inagaki Y., Doolittle W.F., Baldauf S.L., and Roger A.J. Lateral transfer of an EF-1alpha gene: origin and evolution of the large subunit of ATP sulfurylase in eubacteria. Curr Biol 12 (2002) 772-776
    • (2002) Curr Biol , vol.12 , pp. 772-776
    • Inagaki, Y.1    Doolittle, W.F.2    Baldauf, S.L.3    Roger, A.J.4
  • 22
    • 3042601821 scopus 로고    scopus 로고
    • Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1 alpha phylogenies
    • Inagaki Y., Susko E., Fast N.M., and Roger A.J. Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1 alpha phylogenies. Mol Biol Evol 21 (2004) 1340-1349
    • (2004) Mol Biol Evol , vol.21 , pp. 1340-1349
    • Inagaki, Y.1    Susko, E.2    Fast, N.M.3    Roger, A.J.4
  • 23
    • 0037047078 scopus 로고    scopus 로고
    • Second- and third-hand chloroplasts in dinoflagellates: phylogeny of oxygen-evolving enhancer 1 (PsbO) protein reveals replacement of a nuclear-encoded plastid gene by that of a haptophyte tertiary endosymbiont
    • Ishida K., and Green B.R. Second- and third-hand chloroplasts in dinoflagellates: phylogeny of oxygen-evolving enhancer 1 (PsbO) protein reveals replacement of a nuclear-encoded plastid gene by that of a haptophyte tertiary endosymbiont. Proc Natl Acad Sci USA 99 (2002) 9294-9299
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 9294-9299
    • Ishida, K.1    Green, B.R.2
  • 24
    • 7444263971 scopus 로고    scopus 로고
    • A class of eukaryotic GTPase with a punctate distribution suggesting multiple functional replacements of translation elongation factor 1alpha
    • Keeling P.J., and Inagaki Y. A class of eukaryotic GTPase with a punctate distribution suggesting multiple functional replacements of translation elongation factor 1alpha. Proc Natl Acad Sci USA 101 (2004) 15380-15385
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 15380-15385
    • Keeling, P.J.1    Inagaki, Y.2
  • 25
    • 1842422548 scopus 로고    scopus 로고
    • Early evolutionary history of dinoflagellates and apicomplexans (Alveolata) as inferred from HSP90 and actin phylogenies
    • Leander B.S., and Keeling P.J. Early evolutionary history of dinoflagellates and apicomplexans (Alveolata) as inferred from HSP90 and actin phylogenies. J Phycol 40 (2004) 341-350
    • (2004) J Phycol , vol.40 , pp. 341-350
    • Leander, B.S.1    Keeling, P.J.2
  • 26
    • 0036148050 scopus 로고    scopus 로고
    • Evolution of eukaryotic translation elongation and termination factors: variations of evolutionary rate and genetic code deviations
    • Moreira D., Kervestin S., Jean-Jean O., and Philippe H. Evolution of eukaryotic translation elongation and termination factors: variations of evolutionary rate and genetic code deviations. Mol Biol Evol 19 (2002) 189-200
    • (2002) Mol Biol Evol , vol.19 , pp. 189-200
    • Moreira, D.1    Kervestin, S.2    Jean-Jean, O.3    Philippe, H.4
  • 27
    • 6344265521 scopus 로고    scopus 로고
    • Gene replacement of fructose-1,6-bisphosphate aldolase (FBA) supports a single photosynthetic ancestor of chromalveolates
    • Patron N.J., Rogers M.B., and Keeling P.J. Gene replacement of fructose-1,6-bisphosphate aldolase (FBA) supports a single photosynthetic ancestor of chromalveolates. Eukaryot Cell 3 (2004) 1169-1175
    • (2004) Eukaryot Cell , vol.3 , pp. 1169-1175
    • Patron, N.J.1    Rogers, M.B.2    Keeling, P.J.3
  • 28
    • 33645100385 scopus 로고    scopus 로고
    • A tertiary plastid uses genes from two endosymbionts
    • Patron N.J., Waller R.F., and Keeling P.J. A tertiary plastid uses genes from two endosymbionts. J Mol Biol 357 (2006) 1373-1382
    • (2006) J Mol Biol , vol.357 , pp. 1373-1382
    • Patron, N.J.1    Waller, R.F.2    Keeling, P.J.3
  • 29
    • 0030955515 scopus 로고    scopus 로고
    • Phylogenetic analysis of Perkinsus based on actin gene sequences
    • Reece K.S., Siddall M.E., Burreson E.M., and Graves J.E. Phylogenetic analysis of Perkinsus based on actin gene sequences. J Parasitol 83 (1997) 417-423
    • (1997) J Parasitol , vol.83 , pp. 417-423
    • Reece, K.S.1    Siddall, M.E.2    Burreson, E.M.3    Graves, J.E.4
  • 30
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 31
    • 0037217056 scopus 로고    scopus 로고
    • Multiple protein phylogenies show that Oxyhrris marina and Perkinsus marinus are early branches of the dinoflagellate lineage
    • Saldarriaga J.F., McEwan M.L., Fast N.M., Taylor F.J.R., and Keeling P.J. Multiple protein phylogenies show that Oxyhrris marina and Perkinsus marinus are early branches of the dinoflagellate lineage. Int J Sys Evol Microbiol 53 (2003) 355-365
    • (2003) Int J Sys Evol Microbiol , vol.53 , pp. 355-365
    • Saldarriaga, J.F.1    McEwan, M.L.2    Fast, N.M.3    Taylor, F.J.R.4    Keeling, P.J.5
  • 32
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • Shimodaira H. An approximately unbiased test of phylogenetic tree selection. Syst Biol 51 (2002) 492-508
    • (2002) Syst Biol , vol.51 , pp. 492-508
    • Shimodaira, H.1
  • 33
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: for assessing the confidence of phylogenetic tree selection
    • Shimodaira H., and Hasegawa M. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17 (2001) 1246-1247
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2
  • 34
    • 28944452833 scopus 로고    scopus 로고
    • The protistan origins of animals and chytrid fungi
    • Steenkamp E.T., Wright J., and Baldauf S.L. The protistan origins of animals and chytrid fungi. Mol Biol Evol 23 (2006) 93-106
    • (2006) Mol Biol Evol , vol.23 , pp. 93-106
    • Steenkamp, E.T.1    Wright, J.2    Baldauf, S.L.3
  • 35
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies
    • Strimmer K., and von Haeseler A. Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. Mol Biol Evol 13 (1996) 964-969
    • (1996) Mol Biol Evol , vol.13 , pp. 964-969
    • Strimmer, K.1    von Haeseler, A.2
  • 36
    • 0033624957 scopus 로고    scopus 로고
    • Phylogenetic analyses indicate that the 19′hexanoyloxy-fucoxanthin-containing dinoflagellates have tertiary plastids of haptophyte origin
    • Tengs T., Dahlberg O.J., Shalchian-Tabrizi K., Klaveness D., Rudi K., Delwiche C.F., and Jakobsen K.S. Phylogenetic analyses indicate that the 19′hexanoyloxy-fucoxanthin-containing dinoflagellates have tertiary plastids of haptophyte origin. Mol Biol Evol 17 (2000) 718-729
    • (2000) Mol Biol Evol , vol.17 , pp. 718-729
    • Tengs, T.1    Dahlberg, O.J.2    Shalchian-Tabrizi, K.3    Klaveness, D.4    Rudi, K.5    Delwiche, C.F.6    Jakobsen, K.S.7
  • 37
    • 0029989451 scopus 로고    scopus 로고
    • The evolution of stramenopiles and alveolates as derived by "substitution rate calibration" of small ribosomal subunit RNA
    • Van de Peer Y., Van der Auwera G., and De Wachter R. The evolution of stramenopiles and alveolates as derived by "substitution rate calibration" of small ribosomal subunit RNA. J Mol Evol 42 (1996) 201-210
    • (1996) J Mol Evol , vol.42 , pp. 201-210
    • Van de Peer, Y.1    Van der Auwera, G.2    De Wachter, R.3
  • 38
    • 0025908149 scopus 로고
    • The troublesome parasites: molecular and morphological evidence that Apicomplexa belong to the dinoflagellate-ciliate clade
    • Wolters J. The troublesome parasites: molecular and morphological evidence that Apicomplexa belong to the dinoflagellate-ciliate clade. Biosystems 25 (1991) 75-84
    • (1991) Biosystems , vol.25 , pp. 75-84
    • Wolters, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.