-
4
-
-
0031827544
-
Comparative accuracy of methods for protein sequence similarity search
-
P. Agarwal and D. J. States. Comparative accuracy of methods for protein sequence similarity search. BIOINF: Bioinformatics, 14, 1998.
-
(1998)
BIOINF: Bioinformatics
, vol.14
-
-
Agarwal, P.1
States, D.J.2
-
5
-
-
33744484309
-
Biobench: A benchmark suite of bioinformatics applications
-
March
-
K. Albayraktaroglu, A. Jaleel, M. Xue Wu, Franklin, B. Jacob, C. Tseng, and D. Yeung. Biobench: A benchmark suite of bioinformatics applications. Proc. 2005 IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS 2005), Austin TX, March 2005., March 2005.
-
(2005)
Proc. 2005 IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS 2005), Austin TX, March 2005
-
-
Albayraktaroglu, K.1
Jaleel, A.2
Wu, M.X.3
Franklin4
Jacob, B.5
Tseng, C.6
Yeung, D.7
-
7
-
-
0025183708
-
Basic local alignment search tool
-
S. F. Altschul, W. Gish, W. Miller, M. Myers, and D. J. Lipman. Basic local alignment search tool. Journal of Molecular Biology, 215:403-410, 1990.
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, M.4
Lipman, D.J.5
-
8
-
-
0033976454
-
Genbank
-
D. Benson, I. Karsch, D. Lipman, J. Ostell, B. Rapp, and D. Wheeler. Genbank. Nucleic acids research, 28(1):15-18, 2000.
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 15-18
-
-
Benson, D.1
Karsch, I.2
Lipman, D.3
Ostell, J.4
Rapp, B.5
Wheeler, D.6
-
9
-
-
84983641460
-
A systolic array processor for biological information signal processing
-
E. T. Chow, J. C. Peterson, M. S. Waterman, T. Hunkapiller, and B. A. Zimmermann. A systolic array processor for biological information signal processing. In ICS 91: Proceedings of the 5th international conference on Supercomputing, pages 216-223, 1991.
-
(1991)
ICS 91: Proceedings of the 5th International Conference on Supercomputing
, pp. 216-223
-
-
Chow, E.T.1
Peterson, J.C.2
Waterman, M.S.3
Hunkapiller, T.4
Zimmermann, B.A.5
-
11
-
-
0033872689
-
Altivec extension to powerpc accelerates media processing
-
April
-
K. Diefendorff, P. Dubey, R. Hochsprung, and H. Scales. Altivec extension to powerpc accelerates media processing. IEEE Micro, 20(2):85-95, April 2000.
-
(2000)
IEEE Micro
, vol.20
, Issue.2
, pp. 85-95
-
-
Diefendorff, K.1
Dubey, P.2
Hochsprung, R.3
Scales, H.4
-
12
-
-
0020484488
-
An improvement algorithm for matching biological sequences
-
O. Gotoh. An improvement algorithm for matching biological sequences. Journal on Molecular Biology, 162:705-708, 1982.
-
(1982)
Journal on Molecular Biology
, vol.162
, pp. 705-708
-
-
Gotoh, O.1
-
13
-
-
33749080103
-
-
P. Green. Swat. www.genome.washington.edu/uwgc/analysistools/swat.htm.
-
Swat
-
-
Green, P.1
-
14
-
-
0032776495
-
Blocks+: A non-redundant database of protein alignment blocks derived from multiple compilations
-
J. Henikoff, S. Henikoff and S. Pietrokovski. Blocks+: a non-redundant database of protein alignment blocks derived from multiple compilations. Bioinformatics, 15, 1999.
-
(1999)
Bioinformatics
, vol.15
-
-
Henikoff, J.1
Henikoff, S.2
Pietrokovski, S.3
-
17
-
-
0342657281
-
Strategies for searching sequence databases
-
B. Huhg, W David, and J. Alexander. Strategies for searching sequence databases. BioTechniques, 28(6), 2000.
-
(2000)
BioTechniques
, vol.28
, Issue.6
-
-
Huhg, B.1
David, W.2
Alexander, J.3
-
18
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
S. Needleman and C. Wunsch. A general method applicable to the search for similarities in the amino acid sequence of two proteins. Journal of Molecular Biology, 48:443-453, 1970.
-
(1970)
Journal of Molecular Biology
, vol.48
, pp. 443-453
-
-
Needleman, S.1
Wunsch, C.2
-
19
-
-
0025950944
-
Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the smith-waterman and FASTA algorithms
-
W. R. Pearson. Searching protein sequence libraries: comparison of the sensitivity and selectivity of the smith-waterman and FASTA algorithms. Genomes, 11:635-650, 1991.
-
(1991)
Genomes
, vol.11
, pp. 635-650
-
-
Pearson, W.R.1
-
20
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Apr.
-
W. R. Pearson and D. J. Lipman. Improved tools for biological sequence comparison. In Proc. Natl. Acad. Sci (USA)., pages 2444-2448, Apr. 1988.
-
(1988)
Proc. Natl. Acad. Sci (USA)
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
21
-
-
0033743209
-
Six-fold speed-up of smith-waterman sequence database searches using parallel processing on common microprocessors
-
Rognes and Seeberg. Six-fold speed-up of smith-waterman sequence database searches using parallel processing on common microprocessors. BIOINF: Bioinformatics, 16, 2000.
-
(2000)
BIOINF: Bioinformatics
, vol.16
-
-
Rognes1
Seeberg2
-
23
-
-
0034114220
-
The early introduction of dynamic programming into computational biology
-
D. Sankoff. The early introduction of dynamic programming into computational biology. Bioinformatics, 16:1:41-47, 2000.
-
(2000)
Bioinformatics
, vol.16
, Issue.1
, pp. 41-47
-
-
Sankoff, D.1
-
25
-
-
0000821965
-
On the theory and computation of evolutionary distances
-
P. Sellers. On the theory and computation of evolutionary distances. SIAM J. Appl. Match, 26:4:787-793, 1974.
-
(1974)
SIAM J. Appl. Match
, vol.26
, Issue.4
, pp. 787-793
-
-
Sellers, P.1
-
27
-
-
0019887799
-
Identification of common molecular subsequences
-
T. F. Smith and M. S. Waterman. Identification of common molecular subsequences. Journal of Molecular Biology, 147:195-197, 1981.
-
(1981)
Journal of Molecular Biology
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
28
-
-
0026284330
-
Bioscan: A vlsi-based system for biosequence analysis
-
C. White, R. Singh, P. Reintjes, J. Lampe, B. Erickson, W Dettloff, V. Chi, and S. Altschul. Bioscan: a vlsi-based system for biosequence analysis. 1991. IEEE International Conference on Computer Design, ICCD.
-
(1991)
IEEE International Conference on Computer Design, ICCD
-
-
White, C.1
Singh, R.2
Reintjes, P.3
Lampe, J.4
Erickson, B.5
Dettloff, W.6
Chi, V.7
Altschul, S.8
-
29
-
-
0030935244
-
Using video-oriented instructions to speed up sequence comparison
-
A. Wozniak. Using video-oriented instructions to speed up sequence comparison. Computer Applications in the Biosciences, 13(1), 1997.
-
(1997)
Computer Applications in the Biosciences
, vol.13
, Issue.1
-
-
Wozniak, A.1
-
30
-
-
0032024312
-
Parallel computation in biological sequence analysis
-
T. K. Yap, O. Frieder, and R. L. Martino. Parallel computation in biological sequence analysis. IEEE Trans. Parallel Distrib. Syst., 9(3):283-294, 1998.
-
(1998)
IEEE Trans. Parallel Distrib. Syst.
, vol.9
, Issue.3
, pp. 283-294
-
-
Yap, T.K.1
Frieder, O.2
Martino, R.L.3
|