-
1
-
-
0031903739
-
Sequence alignment in molecular biology
-
Apostolico, A. and Giancarlo, R. (1998) Sequence alignment in molecular biology. J. Comput. Biol., 5, 173-196.
-
(1998)
J. Comput. Biol.
, vol.5
, pp. 173-196
-
-
Apostolico, A.1
Giancarlo, R.2
-
2
-
-
0001678047
-
Longest common subsequences of two random sequences
-
Chvátal, V. and Sankoff, D. (1975) Longest common subsequences of two random sequences. J. Appl. Probability, 12, 306-315.
-
(1975)
J. Appl. Probability
, vol.12
, pp. 306-315
-
-
Chvátal, V.1
Sankoff, D.2
-
3
-
-
0345894625
-
Selected combinatorial research problems
-
Chvátal, V., Klarner, D.A. and Knuth, D.E. (1972) Selected combinatorial research problems. Stanford University Computer Science Technical Report. 26, pp. 72-292.
-
(1972)
Stanford University Computer Science Technical Report
, vol.26
, pp. 72-292
-
-
Chvátal, V.1
Klarner, D.A.2
Knuth, D.E.3
-
4
-
-
0014547638
-
Computer analysis of protein evolution
-
Dayhoff, M.O. (1969) Computer analysis of protein evolution. Sci. Am., 221, 86-95.
-
(1969)
Sci. Am.
, vol.221
, pp. 86-95
-
-
Dayhoff, M.O.1
-
5
-
-
84959743928
-
Methods for computing Wagner trees
-
Farris, J.S. (1970) Methods for computing Wagner trees. Syst. Zool., 19, 83-92.
-
(1970)
Syst. Zool.
, vol.19
, pp. 83-92
-
-
Farris, J.S.1
-
6
-
-
0342552288
-
Reflections of the Polish masters - An interview with Stanislaw Ulam and Mark Kac
-
Feigenbaum, M. (1982) Reflections of the Polish masters - an interview with Stanislaw Ulam and Mark Kac. Los Alamos Science, 3, 54-65.
-
(1982)
Los Alamos Science
, vol.3
, pp. 54-65
-
-
Feigenbaum, M.1
-
7
-
-
0024543272
-
A continuous analog for RNA folding
-
Ferretti, V. and Sankoff, D. (1989) A continuous analog for RNA folding. Bull. Math. Biol., 51, 167-171.
-
(1989)
Bull. Math. Biol.
, vol.51
, pp. 167-171
-
-
Ferretti, V.1
Sankoff, D.2
-
8
-
-
84959747425
-
Towards defining the course of evolution: Minimum change for a specific tree topology
-
Fitch, W.M. (1971) Towards defining the course of evolution: minimum change for a specific tree topology. Syst. Zool., 20, 406-416.
-
(1971)
Syst. Zool.
, vol.20
, pp. 406-416
-
-
Fitch, W.M.1
-
9
-
-
0042004878
-
Sequence analysis - Contributions by Ulam to molecular genetics
-
Cooper, N.G. (ed.), Cambridge University Press, Cambridge
-
Goad, W. (1989) Sequence analysis - contributions by Ulam to molecular genetics. In Cooper, N.G. (ed.), From Cardinals to Chaos. Reflections on the Life and Legacy of Stanislaw Ulam Cambridge University Press, Cambridge, pp. 288-291.
-
(1989)
From Cardinals to Chaos. Reflections on the Life and Legacy of Stanislaw Ulam
, pp. 288-291
-
-
Goad, W.1
-
10
-
-
84948870459
-
A similarity measure for graphs - Reflections on a theme of Ulam
-
Cooper, N.G. (ed.), Cambridge University Press, Cambridge
-
Graham, R.L. (1989) A similarity measure for graphs - reflections on a theme of Ulam. In Cooper, N.G. (ed.), From Cardinals to Chaos. Reflections on the Life and Legacy of Stanislaw Ulam Cambridge University Press, Cambridge, pp. 114-121.
-
(1989)
From Cardinals to Chaos. Reflections on the Life and Legacy of Stanislaw Ulam
, pp. 114-121
-
-
Graham, R.L.1
-
11
-
-
85053215035
-
-
Griggs, J.R. (1977) Symmetric chain orders, Sperner theorems, and loop matchings, PhD thesis, Massachusetts Institute of Technology.
-
-
-
-
12
-
-
0002329356
-
Minimal mutation fits to a given tree
-
Hartigan, J.A. (1973) Minimal mutation fits to a given tree. Biometrics, 29, 53-65.
-
(1973)
Biometrics
, vol.29
, pp. 53-65
-
-
Hartigan, J.A.1
-
13
-
-
0002177299
-
An overview of sequence comparison
-
Sankoff, D. and Kruskal, J.B. (eds), Addison-Wesley, Reading, Massachusetts
-
Kruskal, J.B. (1983) An overview of sequence comparison. In Sankoff, D. and Kruskal, J.B. (eds), Time Warps, String Edits and Macromolecules. The Theory and Practice of Sequence Comparison Addison-Wesley, Reading, Massachusetts, pp. 1-33.
-
(1983)
Time Warps, String Edits and Macromolecules. The Theory and Practice of Sequence Comparison
, pp. 1-33
-
-
Kruskal, J.B.1
-
14
-
-
0000390142
-
Binary codes capable of correcting deletions, insertions and reversals
-
Russian
-
Levenshtein, V.I. (1965) Binary codes capable of correcting deletions, insertions and reversals. Dokl. Akad. Nauk USSR, 163, 845-848 (Russian); English Translation: (1966). Cybernetics and Control Theory, 10, 707-710.
-
(1965)
Dokl. Akad. Nauk USSR
, vol.163
, pp. 845-848
-
-
Levenshtein, V.I.1
-
15
-
-
0001116877
-
-
English Translation
-
Levenshtein, V.I. (1965) Binary codes capable of correcting deletions, insertions and reversals. Dokl. Akad. Nauk USSR, 163, 845-848 (Russian); English Translation: (1966). Cybernetics and Control Theory, 10, 707-710.
-
(1966)
Cybernetics and Control Theory
, vol.10
, pp. 707-710
-
-
-
16
-
-
0014757386
-
A special method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman, S.B. and Wunsch, C.D. (1970) A special method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol., 48, 443-453.
-
(1970)
J. Mol. Biol.
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
17
-
-
0002213113
-
Algorithms for loop matchings
-
Nussinov, R., Pieczenik, G., Griggs, J.R. and Kleitman, D.J. (1978) Algorithms for loop matchings. SIAM J. Appl. Math., 35, 68-82.
-
(1978)
SIAM J. Appl. Math.
, vol.35
, pp. 68-82
-
-
Nussinov, R.1
Pieczenik, G.2
Griggs, J.R.3
Kleitman, D.J.4
-
19
-
-
85038047362
-
The lost café
-
Cooper, N.G. (ed.), Cambridge University Press, Cambridge
-
Rota, G.-C. (1989) The lost café. In Cooper, N.G. (ed.), From Cardinals to Chaos. Reflections on the Life and Legacy of Stanislaw Ulam Cambridge University Press, Cambridge, pp. 23-32.
-
(1989)
From Cardinals to Chaos. Reflections on the Life and Legacy of Stanislaw Ulam
, pp. 23-32
-
-
Rota, G.-C.1
-
20
-
-
0015252494
-
Matching sequences under deletion/insertion constraints
-
Sankoff, D. (1972) Matching sequences under deletion/insertion constraints. Proc. Natl. Acad. Sci. USA, 69, 4-6.
-
(1972)
Proc. Natl. Acad. Sci. USA
, vol.69
, pp. 4-6
-
-
Sankoff, D.1
-
21
-
-
0016424695
-
Minimal mutation trees of sequences
-
Sankoff, D. (1975) Minimal mutation trees of sequences. SIAM J. Appl. Math., 28, 35-42.
-
(1975)
SIAM J. Appl. Math.
, vol.28
, pp. 35-42
-
-
Sankoff, D.1
-
22
-
-
0022146059
-
Simultaneous solution of the RNA folding, alignment and protosequence problems
-
Sankoff, D. (1985) Simultaneous solution of the RNA folding, alignment and protosequence problems. SIAM J. Appl. Math., 45, 810-825.
-
(1985)
SIAM J. Appl. Math.
, vol.45
, pp. 810-825
-
-
Sankoff, D.1
-
23
-
-
85053179057
-
-
Sankoff, D. and Kruskal, J.B. (eds) (1983) Time Warps, String Edits and Macromolecules. The Theory and Practice of Sequence Comparison. Addison-Wesley, Reading, MA. Reprinted CSLI publications and CUP, 1999.
-
-
-
-
24
-
-
0000459582
-
Locating the vertices of a Steiner tree in an arbitrary metric space
-
Sankoff, D. and Rousseau, P. (1975) Locating the vertices of a Steiner tree in an arbitrary metric space. Math. Programming, 9, 240-246.
-
(1975)
Math. Programming
, vol.9
, pp. 240-246
-
-
Sankoff, D.1
Rousseau, P.2
-
25
-
-
0002478051
-
Shortcuts, diversions and maximal chains in partially ordered sets
-
Sankoff, D. and Sellers, P.H. (1973) Shortcuts, diversions and maximal chains in partially ordered sets. Discrete Math., 4, 287-293.
-
(1973)
Discrete Math.
, vol.4
, pp. 287-293
-
-
Sankoff, D.1
Sellers, P.H.2
-
26
-
-
0141666829
-
Evolution of 5S RNA and the non-randomness of base replacement
-
Sankoff, D., Morel, C. and Cedergren, R.J. (1973) Evolution of 5S RNA and the non-randomness of base replacement. Nature New Biol., 245, 232-234.
-
(1973)
Nature New Biol.
, vol.245
, pp. 232-234
-
-
Sankoff, D.1
Morel, C.2
Cedergren, R.J.3
-
27
-
-
0017810199
-
The evolution of 5S RNA secondary structures
-
Sankoff, D., Morin, A.-M. and Cedergren, R.J. (1978) The evolution of 5S RNA secondary structures. Can. J. Biochem., 56, 440-443.
-
(1978)
Can. J. Biochem.
, vol.56
, pp. 440-443
-
-
Sankoff, D.1
Morin, A.-M.2
Cedergren, R.J.3
-
28
-
-
0342699024
-
Fast algorithms to predict RNA secondary structures containing multiple loops
-
Sankoff, D. and Kruskal, J.B. (eds), Addison-Wesley, Reading, MA
-
Sankoff, D., Cedergren, R.J., Kruskal, J.B. and Mainville, S. (1983) Fast algorithms to predict RNA secondary structures containing multiple loops. In Sankoff, D. and Kruskal, J.B. (eds), Time Warps, String Edits and Macromolecules. The Theory and Practice of Sequence Comparison Addison-Wesley, Reading, MA, pp. 93-120.
-
(1983)
Time Warps, String Edits and Macromolecules. The Theory and Practice of Sequence Comparison
, pp. 93-120
-
-
Sankoff, D.1
Cedergren, R.J.2
Kruskal, J.B.3
Mainville, S.4
-
29
-
-
0043170974
-
An algorithm for the distance between two finite sequences
-
Sellers, P.H. (1974a) An algorithm for the distance between two finite sequences. J. Combin. Theory Ser. A, 16, 253-258.
-
(1974)
J. Combin. Theory Ser. A
, vol.16
, pp. 253-258
-
-
Sellers, P.H.1
-
30
-
-
0000821965
-
On the theory and computation of evolutionary distance
-
Sellers, P.H. (1974b) On the theory and computation of evolutionary distance. SIAM J. Appl. Math., 26, 787-793.
-
(1974)
SIAM J. Appl. Math.
, vol.26
, pp. 787-793
-
-
Sellers, P.H.1
-
31
-
-
49149141669
-
The theory and computation of evolutionary distances: Pattern recognition
-
Sellers, P.H. (1980) The theory and computation of evolutionary distances: pattern recognition. J. Algorithms, 1, 359-373.
-
(1980)
J. Algorithms
, vol.1
, pp. 359-373
-
-
Sellers, P.H.1
-
32
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith, T.F. and Waterman, M.S. (1981) Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
33
-
-
0005822936
-
Improved estimation of secondary structure in ribonucleic acids
-
Tinoco, I., Borer, P.N., Dengler, B., Levine, M.D., Uhlenbeck, O.C., Crothers, D.M. and Gralla, J. (1973) Improved estimation of secondary structure in ribonucleic acids. Nature New Biol., 246, 40-41.
-
(1973)
Nature New Biol.
, vol.246
, pp. 40-41
-
-
Tinoco, I.1
Borer, P.N.2
Dengler, B.3
Levine, M.D.4
Uhlenbeck, O.C.5
Crothers, D.M.6
Gralla, J.7
-
34
-
-
0010729283
-
Some combinatorial problems studied experimentally on computing machines
-
Zaremba, S.K. (ed.), Press, New York
-
Ulam, S.M. (1972) Some combinatorial problems studied experimentally on computing machines. In Zaremba, S.K. (ed.), Applications of Number Theory to Numerical Analysis Academic Press, New York, pp. 1-10.
-
(1972)
Applications of Number Theory to Numerical Analysis Academic
, pp. 1-10
-
-
Ulam, S.M.1
-
35
-
-
0010727514
-
Speech discrimination by dynamic programming
-
Russian
-
Vintsyuk, T.K. (1968) Speech discrimination by dynamic programming. Kybernetika, 4, 81-88. (Russian); English Translation. Cybernetics, 4, 52-57.
-
(1968)
Kybernetika
, vol.4
, pp. 81-88
-
-
Vintsyuk, T.K.1
-
36
-
-
85038047118
-
-
Vintsyuk, T.K. (1968) Speech discrimination by dynamic programming. Kybernetika, 4, 81-88. (Russian); English Translation. Cybernetics, 4, 52-57.
-
Cybernetics
, vol.4
, pp. 52-57
-
-
-
37
-
-
0015960104
-
The string-to-string correction problem
-
Wagner, R.A. and Fischer, M.J. (1974) The string-to-string correction problem. J. Assoc. Comput. Mach., 21, 168-173.
-
(1974)
J. Assoc. Comput. Mach.
, vol.21
, pp. 168-173
-
-
Wagner, R.A.1
Fischer, M.J.2
-
40
-
-
0018254569
-
RNA secondary structure: A complete mathematical analysis
-
Waterman, M.S. and Smith, T.F. (1978) RNA secondary structure: a complete mathematical analysis. Math. Biosci., 42, 257-266.
-
(1978)
Math. Biosci.
, vol.42
, pp. 257-266
-
-
Waterman, M.S.1
Smith, T.F.2
-
41
-
-
85053214018
-
-
Zaremba, S.K. (ed.) (1972) Applications of Number Theory to Numerical Analysis. Academic Press, New York.
-
-
-
-
42
-
-
0000616205
-
RNA secondary structures and their prediction
-
Zuker, M. and Sankoff, D. (1984) RNA secondary structures and their prediction. Bull. Math. Biol., 46, 591-621.
-
(1984)
Bull. Math. Biol.
, vol.46
, pp. 591-621
-
-
Zuker, M.1
Sankoff, D.2
-
43
-
-
0019876473
-
Optimal folding of large RNA sequences using thermodynamics and auxiliary information
-
Zuker, M. and Stiegler, P. (1981) Optimal folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res., 9, 133-148.
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
|