Proteomics of Lactococcus lactis: Phenotypes for a domestic bacterium

Methods of Biochemical Analysis

Volumn 49, Issue , 2006, Pages 149-178

  Kilstrup, Mogens ^a  

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN;

BACILLUS SUBTILIS; BIOLOGICAL MODEL; BIOTECHNOLOGY; CHEMISTRY; LACTOCOCCUS LACTIS; METABOLISM; METHODOLOGY; PHENOTYPE; PROTEOMICS; REVIEW;

BACILLUS SUBTILIS; BACTERIAL PROTEINS; BIOTECHNOLOGY; LACTOCOCCUS LACTIS; MODELS, BIOLOGICAL; PHENOTYPE; PROTEOMICS;

EID: 33749046281     PISSN: 00766941     EISSN: None     Source Type: Book Series    
DOI: None     Document Type: Review

References (102)

1. Schleifer, K. H., and Ludwig, W., in B. J. B. Wood and W. H. Holzapfel (Eds.), The Genera of Lactic Acid Bacteria, Blackie Academic & Professional, Glasgow, 1995, pp. 7-18.
2. Emard, L. O., and Vaughn, R. H., J. Bacteriol. 1952, 63, 487-494.
3. Martinussen, J., and Hammer, K., Microbiology-UK 1995, 141, 1883-1890.
4. Bolotin, A., Wincker, P., Mauger, S., Jaillon, O., Malarme, K., Weissenbach, J., Ehrlich, S. D., and Sorokin, A., Genome Res. 2001, 11, 731-753.
5. Gaudu, P., Vido, K., Cesselin, W., Kulakauskas, S., Tremblay, J., Rezaiki, L., Lamberet, G., Sourice, S., Duwat, P., and Gruss, A., Ant. Leeuwenhoek Int. J. Gen. Mol. Microbiol. 2002, 82, 263-269.
6. Godon, J. J., Delorme, C., Bardowski, J., Chopin, M. C., Ehrlich, S. D., and Renault, P., J. Bacteriol. 1993, 175, 4383-4390.
7. Bauer, S., Tholen, A., Overmann, J., and Brune, A., Arch. Microbiol. 2000, 173, 126-137.
8. Teuber, M., in B. J. B. Wood and W. H. Holzapfel (Eds.), The Genera of Lactic Acid Bacteria, Blackie Academic & Professional, Glasgow, 1995, pp. 173-234.
9. Sanders, J. W., Venema, G., and Kok, J., FEMS Microbiol. Rev. 1999, 23, 483-501.
10. Gasson, M. J., J. Bacteriol. 1983, 154, 1-9.
11. Wasinger, V. C., Cordwell, S. J., Cerpapoljak, A., Yan, J. X., Gooley, A. A., Wilkins, M. R., Duncan, M. W., Harris, R., Williams, K. L., and Humphery-Smith, I., Electrophoresis 1995, 16, 1090-1094.
12. Drews, O., Reil, G., Parlar, H., and Gorg, A., Proteomics 2004, 4, 1293-1304.
13. Hermann, T., Pfefferle, W., Baumann, C., Busker, E., Schaffer, S., Bott, M., Sahm, H., Dusch, N., Kalinowski, J., Puhler, A., Bendt, A. K., Kramer, R., and Burkovski, A., Electrophoresis 2001, 22, 1712-1723.
14. Santoni, V., Kieffer, S., Desclaux, D., Masson, F., and Rabilloud, T., Electrophoresis 2000, 21, 3329-3344.
15. Kaufmann, H., Bailey, J. E., and Fussenegger, M., Proteomics 2001, 1, 194-199.
16. Fryksdale, B. G., Jedrzejewski, P. T., Wong, D. L., Gaertner, A. L., and Miller, B. S., Electrophoresis 2002, 23, 2184-2193.
17. Blackstock, W. P., and Weir, M. P., Trends Biotechnol. 1999, 17, 121-127.
18. Patton, W. F., J. Chromatogr. B Anal. Technol. Biomed. Life Sci. 2002, 771, 3-31.
19. Smith, M. W., and Neidhardt, F. C., J. Bacteriol. 1983, 154, 336-343.
20. Bernhardt, J., Buttner, K., Scharf, C., and Hecker, M., Electrophoresis 1999, 20, 2225-2240.
21. Fountoulakis, M., Takacs, M. F., Berndt, P., Langen, H., and Takacs, B., Electrophoresis 1999, 20, 2181-2195.
22. Kilstrup, M., Jacobsen, S., Hammer, K., and Vogensen, F. K., Appl. Environ. Microbiol. 1997, 63, 1826-1837.
23. Frees, D., Vogensen, F. K., and Ingmer, H., Int. J. Food Microbiol. 2003, 87, 293-300.
24. Guillot, A., Gitton, C., Anglade, P., and Mistou, M. Y., Proteomics 2003, 3, 337-354.
25. Varmanen, P., Ingmer, H., and Vogensen, F. K., Microbiology-Sgm 2000, 146, 1447-1455.
26. Willemoes, M., Kilstrup, M., Roepstorff, P., and Hammer, K., Proteomics 2002, 2, 1041-1046.
27. Koch, B., Kilstrup, M., Vogensen, F. K., and Hammer, K., J. Bacteriol. 1998, 180, 3873-3881.
28. Klose, J., Electrophoresis 1999, 20, 643-652.
29. VanBogelen, R. A., Schiller, E. E., Thomas, J. D., and Neidhardt, F. C., Electrophoresis 1999, 20, 2149-2159.
30. Champomier-Verges, M. C., Maguin, E., Mistou, M. Y., Anglade, P., and Chich, J. F., J. Chromatogr. B Anal. Technol. Biomed. Life Sci. 2002, 771, 329-342.
31. Vido, K., le Bars, D., Mistou, M. Y., Anglade, P., Gruss, A., and Gaudu, P., J. Bacteriol. 2004, 186, 1648-1657.
32. Kjeldgaard, N. O., Maaloe, O., and Schaechter, M., J. Gen. Microbiol. 1958, 19, 607-616.
33. Schaechter, M., Maaloe, O., and Kjeldgaard, N. O., J. Gen. Microbiol. 1958, 19, 592-606.
34. Pedersen, S., Bloch, P. L., Reeh, S., and Neidhardt, F. C., Cell 1978, 14, 179-190.
35. O'Farrell, P. H., J. Biol. Chem. 1975, 250, 4007-4021.
36. Maas, W. K., and Clark, A. J., J. Mol. Biol. 1964, 8, 365-.
37. Smith, M. W., and Neidhardt, F. C., J. Bacteriol. 1983, 154, 344-350.
38. Jensen, P. R., and Hammer, K., Biotechnol. Bioeng. 1998, 58, 191-195.
39. Solem, C., and Jensen, P. R., Appl. Environ. Microbiol. 2002, 68, 2397-2403.
40. Koebmann, B. J., Andersen, H. W., Solem, C., and Jensen, P. R., Ant. Leeuwenhoek Int. J. Gen. Mol. Microbiol. 2002, 82, 237-248.
41. Andersen, H. W., Pedersen, M. B., Hammer, K., and Jensen, P. R., Eur. J. Biochem. 2001, 268, 6379-6389.
42. Minton, N. P., Gene 1984, 31, 269-273.
43. Jensen, P. R., and Hammer, K., Appl. Environ. Microbiol. 1993, 59, 4363-4366.
44. Phillips, T. A., Vaughn, R. H., Bloch, P. L., and Neidhardt, F. C., in J. L. Ingraham, K. B. Low, B. Magasanik, M. Schaechter, and H. E. Umbarger (Eds.), Escherichia coli and Salmonella typhimurium Cellular and Molecular Biology, Washington, DC, 1987, pp. 919-966.
45. Anglade, P., Demey, E., Labas, V., Le Caer, J. P., and Chich, J. F., Electrophoresis 2000, 21, 2546-2549.
46. Cancilla, M. R., Hillier, A. J., and Davidson, B. E., Microbiology-UK 1995, 141, 1027-1036.
47. Sharp, P. M., and Li, W. H., Nucleic Acids Res. 1987, 15, 1281-1295.
48. Cooper, J. W., and Lee, C. S., Anal. Chem. 2004, 76, 2196-2202.
49. Perrin, C., Gonzalez-Marquez, H., Gaillard, J. L., Bracquart, P., and Guimont, C., Electrophoresis 2000, 21, 949-955.
50. Wilkins, J. C., Homer, K. A., and Beighton, D., Appl. Environ. Microbiol. 2001, 67, 3396-3405.
51. Svensater, G., Welin, J., Wilkins, J. C., Beighton, D., and Hamilton, I. R., FEMS Microbiol. Lett. 2001, 205, 139-146.
52. Len, A. C. L., Cordwell, S. J., Harty, D. W. S., and Jacques, N. A., Proteomics 2003, 3, 627-646.
53. Beyer, N. H., Roepstorff, P., Hammer, K., and Kilstrup, M., Proteomics 2003, 3, 786-797.
54. Ingmer, H., Vogensen, F. K., Hammer, K., and Kilstrup, M., J. Bacteriol. 1999, 181, 2075-2083.
55. Wouters, J. A., Mailhes, M., Rombouts, F. M., De Vos, W. M., Kuipers, O. P., and Abee, T., Appl. Environ. Microbiol. 2000, 66, 3756-3763.
56. Whitaker, R. D., and Batt, C. A., Appl. Environ. Microbiol. 1991, 57, 1408-1412.
57. Hartke, A., Bouche, S., Giard, J. C., Benachour, A., Boutibonnes, P., and Auffray, Y., Curr. Microbiol. 1996, 33, 194-199.
58. Bukau, B., and Horwich, A. L., Cell 1998, 92, 351-366.
59. Zuber, U., and Schumann, W., J. Bacteriol. 1994, 176, 1359-1363.
60. Schulz, A., and Schumann, W., J. Bacteriol. 1996, 178, 1088-1093.
61. Eaton, T. C., Shearman, C., and Gasson, M., J. Gen. Microbiol. 1993, 139, 3253-3264.
62. Kim, S. G., and Batt, C. A., Gene 1993, 127, 121-126.
63. Mogk, A., Homuth, G., Scholz, C., Kim, L., Schmid, F. X., and Schumann, W., EMBO J. 1997, 16, 6518-6527.
64. Mogk, A., Volker, A., Engelmann, S., Hecker, M., Schumann, W., and Volker, U., J. Bacteriol. 1998, 180, 2895-2900.
65. Hartke, A., Frere, J., Boutibonnes, P., and Auffray, Y., Curr. Microbiol. 1997, 34, 23-26.
66. Hartke, A., Bouche, S., Laplace, J. M., Benachour, A., Boutibonnes, P., and Auffray, Y., Arch. Microbiol. 1995, 163, 329-336.
67. Frees, D., and Ingmer, H., Mol. Microbiol. 1999, 31, 79-87.
68. Krüger, E., and Hecker, M., J. Bacteriol. 1998, 180, 6681-6688.
69. Derre, I., Rapoport, G., and Msadek, T., Mol. Microbiol. 1999, 31, 117-131.
70. Frees, D., Varmanen, P., and Ingmer, H., Mol. Microbiol. 2001, 41, 93-103.
71. Kruger, E., Zuhlke, D., Witt, E., Ludwig, H., and Hecker, M., EMBO J. 2001, 20, 852-863.
72. Derre, I., Rapoport, G., and Msadek, T., Mol. Microbiol. 2000, 38, 335-347.
73. Varmanen, P., Vogensen, F. K., Hammer, K., Palva, A., and Ingmer, H., J. Bacteriol. 2003, 185, 5117-5124.
74. Derre, I., Rapoport, G., Devine, K., Rose, M., and Msadek, T., Mol. Microbiol. 1999, 32, 581-593.
75. Horwich, A. L., Weber-Ban, E. U., and Finley, D., Proc. Nat. Acad. Sci. USA 1999, 96, 11033-11040.
76. Csermely, P., Bioessays 1999, 21, 959-965.
77. Schirmer, E. C., Glover, J. R., Singer, M. A., and Lindquist, S., Trends Biochem. Sci. 1996, 21, 289-296.
78. Graumann, P. L., and Marahiel, M. A., Trends Biochem. Sci. 1998, 23, 286-290.
79. Wouters, J. A., Sanders, J. W., Kok, J., De Vos, W. M., Kuipers, O. P., and Abee, T., Microbiology-UK 1998, 144, 2885-2893.
80. Wouters, J. A., Jeynov, B., Rombouts, F. M., De Vos, W. M., Kuipers, O. P., and Abee, T., Microbiology-UK 1999, 145, 3185-3194.
81. Rallu, F., Gruss, A., Ehrlich, S. D., and Maguin, E., Mol. Microbiol. 2000, 35, 517-528.
82. Duwat, P., Ehrlich, S. D., and Gruss, A., Mol. Microbiol. 1999, 31, 845-858.
83. Duwat, P., Cesselin, B., Sourice, S., and Gruss, A., Int. J. Food Microbiol. 2000, 55, 83-86.
84. Kilstrup, M., and Martinussen, J., J. Bacteriol. 1998, 180, 3907-3916.
85. Kilstrup, M., Jessing, S. G., Wichmand-Jorgensen, S. B., Madsen, M., and Nilsson, D., J. Bacteriol. 1998, 180, 3900-3906.
86. Weng, M., Nagy, P. L., and Zalkin, H., Proc. Natl. Acad. Sci. USA 1995, 92, 7455-7459.
87. Turner, R. J., Lu, Y., and Switzer, R. L., J. Bacteriol. 1994, 176, 3708-3722.
88. Martinussen, J., Schallert, J., Andersen, B., and Hammer, K., J. Bacteriol. 2001, 183, 2785-2794.
89. Martinussen, J., Glaser, P., Andersen, P. S., and Saxild, H. H., J. Bacteriol. 1995, 177, 271-274.
90. Bonner, E. R., D'Elia, J. N., Billips, B. K., and Switzer, R. L., Nucleic Acids Res. 2001, 29, 4851-4865.
91. Nessler, S., Fieulaine, S., Poncet, S., Galinier, A., Deutscher, J., and Janin, J., J. Bacteriol. 2003, 185, 4003-4010.
92. Monedero, V., Kuipers, O. P., Jamet, E., and Deutscher, J., J. Bacteriol. 2001, 183, 3391-3398.
93. Luesink, E. J., van Herpen, R. E., M. A., Grossiord, B. P., Kuipers, O. P., and De Vos, W. M., Mol. Microbiol. 1998, 30, 789-798.
94. Hugenholtz, J., Kleerebezem, M., Starrenburg, M., Delcour, J., De Vos, W., and Hols, P., Appl. Environ. Microbiol. 2000, 66, 4112-4114.
95. Duwat, P., Sourice, S., Cesselin, B., Lamberet, G., Vido, K., Gaudu, P., Le Loir, Y., Violet, F., Loubiere, P., and Gruss, A., J. Bacteriol. 2001, 183, 4509-4516.
96. Koebmann, B. J., Nilsson, D., Kuipers, O. P., and Jensen, P. R., J. Bacteriol. 2000, 182, 4738-4743.
97. Gaudu, P., Lamberet, G., Poncet, S., and Gruss, A., Mol. Microbiol 2003, 50, 183-192.
98. Cash, P., Argo, E., Ford, L., Lawrie, L., and McKenzie, H., Electrophoresis 1999, 20, 2259-2268.
99. Amezaga, M. R., Carter, P. E., Cash, P., and McKenzie, H., J. Clin. Microbiol. 2002, 40, 3313-3318.
100. Pancholi, V., and Fischetti, V. A., J. Exp. Med. 1992, 176, 415-426.
101. Lottenberg, R., Broder, C. C., Boyle, M. D. P., Kain, S. J., Schroeder, B. L., and Curtiss, R., J. Bacteriol. 1992, 174, 5204-5210.
102. Pancholi, V., and Fischetti, V. A., Proc. Nat. Acad. Sci. USA 1993, 90, 8154-8158.