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Volumn 45, Issue 38, 2006, Pages 11674-11680

Ability of viral topoisomerase II to discern the handedness of supercoiled DNA: Bimodal recognition of DNA geometry by type II enzymes

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; DNA; ENZYME KINETICS; ESCHERICHIA COLI; GEOMETRY; VIRUSES;

EID: 33748991182     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0520838     Document Type: Article
Times cited : (22)

References (38)
  • 2
    • 0001731921 scopus 로고
    • Roles of supercoiled DNA structure in DNA transactions
    • Kanaar, R., and Cozzarelli, N. R. (1992) Roles of supercoiled DNA structure in DNA transactions, Curr. Opin. Struct. Biol. 2, 369-379.
    • (1992) Curr. Opin. Struct. Biol. , vol.2 , pp. 369-379
    • Kanaar, R.1    Cozzarelli, N.R.2
  • 3
    • 0030014783 scopus 로고    scopus 로고
    • DNA topoisomerases
    • Wang, J. C. (1996) DNA topoisomerases, Annu. Rev. Biochem. 65, 635-692.
    • (1996) Annu. Rev. Biochem. , vol.65 , pp. 635-692
    • Wang, J.C.1
  • 4
    • 3142665836 scopus 로고    scopus 로고
    • A topological view of the replicon
    • Schvartzman, J. B., and Stasiak, A. (2004) A topological view of the replicon, EMBO Rep. 5, 256-261.
    • (2004) EMBO Rep. , vol.5 , pp. 256-261
    • Schvartzman, J.B.1    Stasiak, A.2
  • 5
    • 0036085460 scopus 로고    scopus 로고
    • Cellular roles of DNA topoisomerases: A molecular perspective
    • Wang, J. C. (2002) Cellular roles of DNA topoisomerases: a molecular perspective, Nat. Rev. Mol. Cell. Biol. 3, 430-440.
    • (2002) Nat. Rev. Mol. Cell. Biol. , vol.3 , pp. 430-440
    • Wang, J.C.1
  • 6
    • 0023639882 scopus 로고
    • DNA topoisomerase activity is required as a swivel for DNA replication and for ribosomal RNA transcription
    • Brill, S. J., DiNardo, S., Voelkel-Meiman, K., and Sternglanz, R. (1987) DNA topoisomerase activity is required as a swivel for DNA replication and for ribosomal RNA transcription, Nci. Monogr. 4, 11-15.
    • (1987) Nci. Monogr. , vol.4 , pp. 11-15
    • Brill, S.J.1    Dinardo, S.2    Voelkel-Meiman, K.3    Sternglanz, R.4
  • 7
    • 0024338961 scopus 로고
    • Function of DNA topoisomerases as replication swivels in Saccharomyces cerevisiae
    • Kim, R. A., and Wang, J. C. (1989) Function of DNA topoisomerases as replication swivels in Saccharomyces cerevisiae, J. Mol. Biol. 208, 257-267.
    • (1989) J. Mol. Biol. , vol.208 , pp. 257-267
    • Kim, R.A.1    Wang, J.C.2
  • 8
    • 0032189942 scopus 로고    scopus 로고
    • Investigating the biological functions of DNA topoisomerases in eukaryotic cells
    • Nitiss, J. L. (1998) Investigating the biological functions of DNA topoisomerases in eukaryotic cells, Biochim. Biophys. Acta 1400, 63-81.
    • (1998) Biochim. Biophys. Acta , vol.1400 , pp. 63-81
    • Nitiss, J.L.1
  • 9
    • 0033628701 scopus 로고    scopus 로고
    • Topoisomerase II as a target for anticancer drugs: When enzymes stop being nice
    • Fortune, J. M., and Osheroff, N. (2000) Topoisomerase II as a target for anticancer drugs: when enzymes stop being nice, Prog. Nucleic Acid Res. Mol. Biol. 64, 221-253.
    • (2000) Prog. Nucleic Acid Res. Mol. Biol. , vol.64 , pp. 221-253
    • Fortune, J.M.1    Osheroff, N.2
  • 10
    • 0034923502 scopus 로고    scopus 로고
    • DNA topisomerases: Structure, function, and mechanism
    • Champoux, J. J. (2001) DNA topisomerases: structure, function, and mechanism, Annu. Rev. Biochem. 70, 369-413.
    • (2001) Annu. Rev. Biochem. , vol.70 , pp. 369-413
    • Champoux, J.J.1
  • 13
    • 0031695155 scopus 로고    scopus 로고
    • Moving one DNA double helix through another by a type II DNA topoisomerase: The story of a simple molecular machine
    • Wang, J. C. (1998) Moving one DNA double helix through another by a type II DNA topoisomerase: the story of a simple molecular machine, Q. Rev. Biophys. 31, 107-144.
    • (1998) Q. Rev. Biophys. , vol.31 , pp. 107-144
    • Wang, J.C.1
  • 14
    • 0037870269 scopus 로고    scopus 로고
    • Stabilization of eukaryotic topoisomerase II-DNA cleavage complexes
    • Wilstermann, A. M., and Osheroff, N. (2003) Stabilization of eukaryotic topoisomerase II-DNA cleavage complexes, Curr. Top. Med. Chem. 3, 1349-1364.
    • (2003) Curr. Top. Med. Chem. , vol.3 , pp. 1349-1364
    • Wilstermann, A.M.1    Osheroff, N.2
  • 15
    • 0021099884 scopus 로고
    • DNA topoisomerase II from Drosophila melanogaster. Relaxation of supercoiled DNA
    • Osheroff, N., Shelton, E. R., and Brutlag, D. L. (1983) DNA topoisomerase II from Drosophila melanogaster. Relaxation of supercoiled DNA, J. Biol. Chem. 258, 9536-9543.
    • (1983) J. Biol. Chem. , vol.258 , pp. 9536-9543
    • Osheroff, N.1    Shelton, E.R.2    Brutlag, D.L.3
  • 16
    • 0023001151 scopus 로고
    • Eukaryotic topoisomerase II. Characterization of enzyme turnover
    • Osheroff, N. (1986) Eukaryotic topoisomerase II. Characterization of enzyme turnover, J. Biol. Chem. 261, 9944-9950.
    • (1986) J. Biol. Chem. , vol.261 , pp. 9944-9950
    • Osheroff, N.1
  • 17
    • 0025647116 scopus 로고
    • Eukaryotic topoisomerases recognize nucleic acid topology by preferentially interacting with DNA crossovers
    • Zechiedrich, E. L., and Osheroff, N. (1990) Eukaryotic topoisomerases recognize nucleic acid topology by preferentially interacting with DNA crossovers, EMBO J. 9, 4555-4562.
    • (1990) EMBO J. , vol.9 , pp. 4555-4562
    • Zechiedrich, E.L.1    Osheroff, N.2
  • 18
    • 0027221961 scopus 로고
    • On the simultaneous binding of eukaryotic DNA topoisomerase II to a pair of double-stranded DNA helices
    • Roca, J., Berger, J. M., and Wang, J. C. (1993) On the simultaneous binding of eukaryotic DNA topoisomerase II to a pair of double-stranded DNA helices, J. Biol. Chem. 268, 14250-14255.
    • (1993) J. Biol. Chem. , vol.268 , pp. 14250-14255
    • Roca, J.1    Berger, J.M.2    Wang, J.C.3
  • 19
    • 28244433817 scopus 로고    scopus 로고
    • Human topoisomerase IIα rapidly relaxes positively supercoiled DNA: Implications for enzyme action ahead of replication forks
    • McClendon, A. K., Rodriguez, A. C., and Osheroff, N. (2005) Human topoisomerase IIα rapidly relaxes positively supercoiled DNA: Implications for enzyme action ahead of replication forks, J. Biol. Chem. 280, 39337-39345.
    • (2005) J. Biol. Chem. , vol.280 , pp. 39337-39345
    • McClendon, A.K.1    Rodriguez, A.C.2    Osheroff, N.3
  • 20
    • 0034669232 scopus 로고    scopus 로고
    • Preferential relaxation of positively supercoiled DNA by E. coli topoisomerase IV in single-molecule and ensemble measurements
    • Crisona, N. J., Strick, T. R., Bensimon, D., Croquette, V., and Cozzarelli, N. R. (2000) Preferential relaxation of positively supercoiled DNA by E. coli topoisomerase IV in single-molecule and ensemble measurements, Genes Dev. 14, 2881-2892.
    • (2000) Genes Dev. , vol.14 , pp. 2881-2892
    • Crisona, N.J.1    Strick, T.R.2    Bensimon, D.3    Croquette, V.4    Cozzarelli, N.R.5
  • 22
    • 0043194014 scopus 로고    scopus 로고
    • Single-molecule study of DNA unlinking by eukaryotic and prokaryotic type-II topoisomerases
    • Charvin, G., Bensimon, D., and Croquette, V. (2003) Single-molecule study of DNA unlinking by eukaryotic and prokaryotic type-II topoisomerases, Proc. Natl. Acad. Sci. U.S.A. 100, 9820-9825.
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 9820-9825
    • Charvin, G.1    Bensimon, D.2    Croquette, V.3
  • 23
    • 0022521993 scopus 로고
    • Tandem regions of yeast DNA topoisomerase II share homology with different subunits of bacterial gyrase
    • Lynn, R., Giaever, G., Swanberg, S. L., and Wang, J. C. (1986) Tandem regions of yeast DNA topoisomerase II share homology with different subunits of bacterial gyrase, Science 233, 647-649.
    • (1986) Science , vol.233 , pp. 647-649
    • Lynn, R.1    Giaever, G.2    Swanberg, S.L.3    Wang, J.C.4
  • 24
    • 0024499288 scopus 로고
    • Structure of the Drosophila DNA topoisomerase II gene. Nucleotide sequence and homology among topoisomerases II
    • Wyckoff, E., Natalie, D., Nolan, J. M., Lee, M., and Hsieh, T. (1989) Structure of the Drosophila DNA topoisomerase II gene. Nucleotide sequence and homology among topoisomerases II, J. Mol. Biol. 205, 1-13.
    • (1989) J. Mol. Biol. , vol.205 , pp. 1-13
    • Wyckoff, E.1    Natalie, D.2    Nolan, J.M.3    Lee, M.4    Hsieh, T.5
  • 25
    • 2442611949 scopus 로고    scopus 로고
    • The C-terminal domain of DNA gyrase a adopts a DNA-bending beta-pinwheel fold
    • Corbett, K. D., Shultzaberger, R. K., and Berger, J. M. (2004) The C-terminal domain of DNA gyrase A adopts a DNA-bending beta-pinwheel fold, Proc. Natl. Acad. Sci. U.S.A. 101, 7293-7298.
    • (2004) Proc. Natl. Acad. Sci. U.S.A. , vol.101 , pp. 7293-7298
    • Corbett, K.D.1    Shultzaberger, R.K.2    Berger, J.M.3
  • 26
    • 11244308067 scopus 로고    scopus 로고
    • Structure of the topoisomerase IV C-terminal domain: A broken beta-propeller implies a role as geometry facilitator in catalysis
    • Hsieh, T. J., Farh, L., Huang, W. M., and Chan, N. L. (2004) Structure of the topoisomerase IV C-terminal domain: a broken beta-propeller implies a role as geometry facilitator in catalysis, J. Biol. Chem. 279, 55587-55593.
    • (2004) J. Biol. Chem. , vol.279 , pp. 55587-55593
    • Hsieh, T.J.1    Farh, L.2    Huang, W.M.3    Chan, N.L.4
  • 27
    • 22544467771 scopus 로고    scopus 로고
    • The structural basis for substrate specificity in DNA topoisomerase IV
    • Corbett, K. D., Schoeffler, A. J., Thomsen, N. D., and Berger, J. M. (2005) The structural basis for substrate specificity in DNA topoisomerase IV, J. Mol. Biol. 351, 545-561.
    • (2005) J. Mol. Biol. , vol.351 , pp. 545-561
    • Corbett, K.D.1    Schoeffler, A.J.2    Thomsen, N.D.3    Berger, J.M.4
  • 28
    • 33644671059 scopus 로고    scopus 로고
    • The geometry of DNA supercoils modulates topoisomerase-mediated DNA cleavage and enzyme response to anticancer drugs
    • McClendon, A. K., and Osheroff, N. (2006) The geometry of DNA supercoils modulates topoisomerase-mediated DNA cleavage and enzyme response to anticancer drugs, Biochemistry 45, 3040-3050.
    • (2006) Biochemistry , vol.45 , pp. 3040-3050
    • McClendon, A.K.1    Osheroff, N.2
  • 29
    • 0034629090 scopus 로고    scopus 로고
    • Topoisomerase II from Chlorella virus PBCV-1, Characterization of the smallest known type II topoisomerase
    • Lavrukhin, O. V., Fortune, J. M., Wood, T. G., Burbank, D. E., Van Etten, J. L., Osheroff, N., and Lloyd, R. S. (2000) Topoisomerase II from Chlorella virus PBCV-1, Characterization of the smallest known type II topoisomerase, J. Biol. Chem. 275, 6915-6921.
    • (2000) J. Biol. Chem. , vol.275 , pp. 6915-6921
    • Lavrukhin, O.V.1    Fortune, J.M.2    Wood, T.G.3    Burbank, D.E.4    Van Etten, J.L.5    Osheroff, N.6    Lloyd, R.S.7
  • 30
    • 0035968227 scopus 로고    scopus 로고
    • Topoisomerase II from Chlorella virus PBCV-1 has an exceptionally high DNA cleavage activity
    • Fortune, J. M., Lavrukhin, O. V., Gurnon, J. R., Van Etten, J. L., Lloyd, R. S., and Osheroff, N. (2001) Topoisomerase II from Chlorella virus PBCV-1 has an exceptionally high DNA cleavage activity, J. Biol. Chem. 276, 24401-24408.
    • (2001) J. Biol. Chem. , vol.276 , pp. 24401-24408
    • Fortune, J.M.1    Lavrukhin, O.V.2    Gurnon, J.R.3    Van Etten, J.L.4    Lloyd, R.S.5    Osheroff, N.6
  • 32
    • 14844359841 scopus 로고    scopus 로고
    • Chlorella virus Marburg topoisomerase II: High DNA cleavage activity as a characteristic of Chlorella virus type II enzymes
    • Dickey, J. S., Choi, T. J., Van Etten, J. L., and Osheroff, N. (2005) Chlorella virus Marburg topoisomerase II: high DNA cleavage activity as a characteristic of Chlorella virus type II enzymes, Biochemistry 44, 3899-3908.
    • (2005) Biochemistry , vol.44 , pp. 3899-3908
    • Dickey, J.S.1    Choi, T.J.2    Van Etten, J.L.3    Osheroff, N.4
  • 33
    • 0037119393 scopus 로고    scopus 로고
    • Studies of a positive supercoiling machine. Nucleotide hydrolysis and a multifunctional "latch" in the mechanism of reverse gyrase
    • Rodriguez, A. C. (2002) Studies of a positive supercoiling machine. Nucleotide hydrolysis and a multifunctional "latch" in the mechanism of reverse gyrase, J. Biol. Chem. 277, 29865-29873.
    • (2002) J. Biol. Chem. , vol.277 , pp. 29865-29873
    • Rodriguez, A.C.1
  • 34
    • 0032504157 scopus 로고    scopus 로고
    • Merbarone inhibits the catalytic activity of human topoisomerase IIα by blocking DNA cleavage
    • Fortune, J. M., and Osheroff, N. (1998) Merbarone inhibits the catalytic activity of human topoisomerase IIα by blocking DNA cleavage, J. Biol. Chem. 273, 17643-17650.
    • (1998) J. Biol. Chem. , vol.273 , pp. 17643-17650
    • Fortune, J.M.1    Osheroff, N.2
  • 35
    • 0037172804 scopus 로고    scopus 로고
    • A unique type II topoisomerase mutant that is hypersensitive to a broad range of cleavage-inducing antitumor agents
    • O'Reilly, E. K., and Kreuzer, K. N. (2002) A unique type II topoisomerase mutant that is hypersensitive to a broad range of cleavage-inducing antitumor agents, Biochemistry 41, 7989-7997.
    • (2002) Biochemistry , vol.41 , pp. 7989-7997
    • O'Reilly, E.K.1    Kreuzer, K.N.2
  • 36
    • 1642494897 scopus 로고    scopus 로고
    • Cobalt enhances DNA cleavage mediated by human topoisomerase IIα in vitro and in cultured cells
    • Baldwin, E. L., Byl, J. A., and Osheroff, N. (2004) Cobalt enhances DNA cleavage mediated by human topoisomerase IIα in vitro and in cultured cells, Biochemistry 43, 728-735.
    • (2004) Biochemistry , vol.43 , pp. 728-735
    • Baldwin, E.L.1    Byl, J.A.2    Osheroff, N.3
  • 37
    • 28844455588 scopus 로고    scopus 로고
    • Recent advances in understanding structure-function relationships in the type II topoisomerase mechanism
    • Schoeffler, A. J., and Berger, J. M. (2005) Recent advances in understanding structure-function relationships in the type II topoisomerase mechanism, Biochem. Soc. Trans. 33, 1465-1470.
    • (2005) Biochem. Soc. Trans. , vol.33 , pp. 1465-1470
    • Schoeffler, A.J.1    Berger, J.M.2
  • 38
    • 0026503668 scopus 로고
    • A role for the passage helix in the DNA cleavage reaction of eukaryotic topoisomerase II. A two-site model for enzyme-mediated DNA cleavage
    • Corbett, A. H., Zechiedrich, E. L., and Osheroff, N. (1992) A role for the passage helix in the DNA cleavage reaction of eukaryotic topoisomerase II. A two-site model for enzyme-mediated DNA cleavage, J. Biol. Chem. 267, 683-686.
    • (1992) J. Biol. Chem. , vol.267 , pp. 683-686
    • Corbett, A.H.1    Zechiedrich, E.L.2    Osheroff, N.3


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