-
1
-
-
0037841805
-
The deep roots of Eukaryotes
-
Baldauf SL (2003) The deep roots of Eukaryotes. Science 300: 1703-1706.
-
(2003)
Science
, vol.300
, pp. 1703-1706
-
-
Baldauf, S.L.1
-
2
-
-
0001225414
-
Fungal molecular evolution: Gene trees and geologic time
-
(McLaughlin DJ, McLaughlin EG & Lemke PA, eds), Springer, Berlin
-
Berbee ML & Taylor JW (2001) Fungal molecular evolution: gene trees and geologic time. The Mycota: a Comprehensive Treatise on Fungi as Experimental Systems for Basic and Applied Research. Vol. VII (McLaughlin DJ, McLaughlin EG & Lemke PA, eds), pp 229-245. Springer, Berlin.
-
(2001)
The Mycota: A Comprehensive Treatise on Fungi As Experimental Systems for Basic and Applied Research. Vol. VII
, pp. 229-245
-
-
Berbee, M.L.1
Taylor, J.W.2
-
3
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17: 540-552.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
4
-
-
0036061865
-
A phylogenomic approach to bacterial phylogeny: Evidence of a core of genes sharing a common history
-
Daubin V, Gouy M & Perrière G (2002) A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history. Genome Res 12: 1080-1090.
-
(2002)
Genome Res
, vol.12
, pp. 1080-1090
-
-
Daubin, V.1
Gouy, M.2
Perrière, G.3
-
5
-
-
10844277854
-
Phylogeny and evolution of medical species of Candida and related taxa: A multigenic analysis
-
Diezmann S, Cox CJ, Schonian G, Vilgalys RJ & Mitchell TG (2004) Phylogeny and evolution of medical species of Candida and related taxa: a multigenic analysis. J Clin Microbiol 42: 5624-5635.
-
(2004)
J Clin Microbiol
, vol.42
, pp. 5624-5635
-
-
Diezmann, S.1
Cox, C.J.2
Schonian, G.3
Vilgalys, R.J.4
Mitchell, T.G.5
-
6
-
-
3042720475
-
Genome evolution in yeasts
-
Dujon B, Sherman D, Fischer G, et al. (2004) Genome evolution in yeasts. Nature 430: 35-44.
-
(2004)
Nature
, vol.430
, pp. 35-44
-
-
Dujon, B.1
Sherman, D.2
Fischer, G.3
-
7
-
-
3042564141
-
Comparative genomic hybridization provides new insights into the molecular taxonomy of the Saccharomyces sensu stricto complex
-
Edwards-Ingram LC, Gent ME, Hoyle DC, Hayes A, Stateva LI & Oliver SG (2004) Comparative genomic hybridization provides new insights into the molecular taxonomy of the Saccharomyces sensu stricto complex. Genome Res 14: 1043-1051.
-
(2004)
Genome Res
, vol.14
, pp. 1043-1051
-
-
Edwards-Ingram, L.C.1
Gent, M.E.2
Hoyle, D.C.3
Hayes, A.4
Stateva, L.I.5
Oliver, S.G.6
-
8
-
-
0000312904
-
Molecular evidence for the evolutionary hiatus between Saccharomyces cerevisiae and Schizosaccharomyces pombe
-
Eriksson OE, Svedskog A & Landvik S (1993) Molecular evidence for the evolutionary hiatus between Saccharomyces cerevisiae and Schizosaccharomyces pombe. Syst Ascomyc 11: 119-162.
-
(1993)
Syst Ascomyc
, vol.11
, pp. 119-162
-
-
Eriksson, O.E.1
Svedskog, A.2
Landvik, S.3
-
9
-
-
0029901637
-
Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods
-
Felsenstein J (1996) Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. Methods Enzymol 266: 418-427.
-
(1996)
Methods Enzymol
, vol.266
, pp. 418-427
-
-
Felsenstein, J.1
-
10
-
-
28844492079
-
Genomics of the fungal kingdom: Insights into eukaryotic biology
-
Galagan JE, Henn MR, Ma L, Cuomo CA & Birren B (2005) Genomics of the fungal kingdom: insights into eukaryotic biology. Genome Res 15: 1620-1631.
-
(2005)
Genome Res
, vol.15
, pp. 1620-1631
-
-
Galagan, J.E.1
Henn, M.R.2
Ma, L.3
Cuomo, C.A.4
Birren, B.5
-
11
-
-
0035712954
-
The magnitude of fungal diversity: The 1.5 million species estimate revisited
-
Hawksworth DL (2001) The magnitude of fungal diversity: the 1.5 million species estimate revisited. Mycol Res 105: 1422-1432.
-
(2001)
Mycol Res
, vol.105
, pp. 1422-1432
-
-
Hawksworth, D.L.1
-
12
-
-
4644304792
-
Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts
-
Hittinger CT, Rokas A & Carroll SB (2004) Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts. Proc Natl Acad Sci USA 101: 14144-14149.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 14144-14149
-
-
Hittinger, C.T.1
Rokas, A.2
Carroll, S.B.3
-
13
-
-
0034849408
-
MrBayes: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP & Ronquist FR (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.R.2
-
14
-
-
0344256533
-
Phylogenetic circumscription of Saccharomyces, Kluyveromyces and other members of the Saccharomycetaceae, and the proposal of the new genera Lachancea, Nakaseomyces, Naumovia, Vanderwaltozyma and Zygotorulaspora
-
Kurtzman CP (2003) Phylogenetic circumscription of Saccharomyces, Kluyveromyces and other members of the Saccharomycetaceae, and the proposal of the new genera Lachancea, Nakaseomyces, Naumovia, Vanderwaltozyma and Zygotorulaspora. FEMS Yeast Res 4: 233-245.
-
(2003)
FEMS Yeast Res
, vol.4
, pp. 233-245
-
-
Kurtzman, C.P.1
-
15
-
-
0037540048
-
Phylogenetic relationships among yeasts of the Saccharomyces complex determined from multigene sequence analyses
-
Kurtzman CP & Robnett CJ (2003) Phylogenetic relationships among yeasts of the Saccharomyces complex determined from multigene sequence analyses. FEMS Yeast Res 3: 417-432.
-
(2003)
FEMS Yeast Res
, vol.3
, pp. 417-432
-
-
Kurtzman, C.P.1
Robnett, C.J.2
-
16
-
-
32044471897
-
Assembling the fungal tree of life: Progress, classification and evolution of subcellular traits
-
Lutzoni F, Kauff F, Cox CJ, et al. (2004) Assembling the fungal tree of life: progress, classification and evolution of subcellular traits. Am J Bot 91: 1446-1480.
-
(2004)
Am J Bot
, vol.91
, pp. 1446-1480
-
-
Lutzoni, F.1
Kauff, F.2
Cox, C.J.3
-
18
-
-
0036283136
-
Phylogeny and systematics of the fungi with special reference to the Ascomycota and Basidiomycota
-
Prillinger H, Lopandic K, Schweigkofler W, Deak R, Aarts HJM, Bauer R, Sterflinger K, Kraus GF & Maraz A (2002) Phylogeny and systematics of the fungi with special reference to the Ascomycota and Basidiomycota. Chem Immunol 81: 207-295.
-
(2002)
Chem Immunol
, vol.81
, pp. 207-295
-
-
Prillinger, H.1
Lopandic, K.2
Schweigkofler, W.3
Deak, R.4
Aarts, H.J.M.5
Bauer, R.6
Sterflinger, K.7
Kraus, G.F.8
Maraz, A.9
-
20
-
-
0242365676
-
Genome-scale approaches to resolving incongruence in molecular phylogenies
-
Rokas A, Williams BL, King N & Carroll SB (2003) Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 425: 798-804.
-
(2003)
Nature
, vol.425
, pp. 798-804
-
-
Rokas, A.1
Williams, B.L.2
King, N.3
Carroll, S.B.4
-
21
-
-
0034708444
-
Comparative genomics of the Eukaryotes
-
Rubin GM, Yandell MD, Wortman JR, et al. (2000) Comparative genomics of the Eukaryotes. Science 287: 2204-2215.
-
(2000)
Science
, vol.287
, pp. 2204-2215
-
-
Rubin, G.M.1
Yandell, M.D.2
Wortman, J.R.3
-
22
-
-
0038158155
-
Obtaining maximal concatenated phylogenetic data sets from large sequence databases
-
Sanderson MJ, Driskell AC, Ree RH, Eulenstein O & Langley S (2003) Obtaining maximal concatenated phylogenetic data sets from large sequence databases. Mol Biol Evol 20: 1036-1042.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 1036-1042
-
-
Sanderson, M.J.1
Driskell, A.C.2
Ree, R.H.3
Eulenstein, O.4
Langley, S.5
-
23
-
-
0036205377
-
TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
-
Schmidt HA, Strimmer K, Vingron M & von Haeseler A (2002) TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18: 502-504.
-
(2002)
Bioinformatics
, vol.18
, pp. 502-504
-
-
Schmidt, H.A.1
Strimmer, K.2
Vingron, M.3
Von Haeseler, A.4
-
24
-
-
0035711692
-
A new fungal phylum, the Glomeromycota: Phylogeny and evolution
-
Schüßler A, Schwarzott D & Walker C (2001) A new fungal phylum, the Glomeromycota: phylogeny and evolution. Mycol Res 105: 1413-1421.
-
(2001)
Mycol Res
, vol.105
, pp. 1413-1421
-
-
Schüßler, A.1
Schwarzott, D.2
Walker, C.3
-
25
-
-
0032900532
-
Genome phylogeny based on gene content
-
Snel B, Bork P & Huynen MA (1999) Genome phylogeny based on gene content. Nat Genet 21: 108-110.
-
(1999)
Nat Genet
, vol.21
, pp. 108-110
-
-
Snel, B.1
Bork, P.2
Huynen, M.A.3
-
26
-
-
0034666108
-
STRING: A web-server to retrieve and display the repeatedly occurring neighbourhood of a gene
-
Snel B, Lehmann G, Bork P & Huynen MA (2000) STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene. Nucleic Acids Res 28: 3442-3444.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 3442-3444
-
-
Snel, B.1
Lehmann, G.2
Bork, P.3
Huynen, M.A.4
-
28
-
-
0141706951
-
The full-length phylogenetic tree from 1551 ribosomal sequences of chitinous fungi, Fungi
-
Tehler A, Little DP & Farris JS (2003) The full-length phylogenetic tree from 1551 ribosomal sequences of chitinous fungi, Fungi. Mycol Res 107: 901-916.
-
(2003)
Mycol Res
, vol.107
, pp. 901-916
-
-
Tehler, A.1
Little, D.P.2
Farris, J.S.3
-
29
-
-
0031574072
-
The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F & Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
30
-
-
0035031966
-
A general empirical model of protein evolution derived from multiple protein families using a maximum likelihood approach
-
Whelan S & Goldman N (2001) A general empirical model of protein evolution derived from multiple protein families using a maximum likelihood approach. Mol Biol Evol 18: 691-699.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 691-699
-
-
Whelan, S.1
Goldman, N.2
-
31
-
-
0348044549
-
Genome trees constructed using five different approaches suggest new major bacterial clades
-
Wolf YI, Rogozin IB, Grishin NV, Tatusov RL & Koonin EV (2001) Genome trees constructed using five different approaches suggest new major bacterial clades. BMC Evol Biol 1: 8-28.
-
(2001)
BMC Evol Biol
, vol.1
, pp. 8-28
-
-
Wolf, Y.I.1
Rogozin, I.B.2
Grishin, N.V.3
Tatusov, R.L.4
Koonin, E.V.5
-
32
-
-
0345874732
-
Coelomata and not Ecdysozoa: Evidence from genome-wide phylogenetic analysis
-
Wolf YI, Rogozin IB & Koonin EV (2004) Coelomata and not Ecdysozoa: evidence from genome-wide phylogenetic analysis. Genome Res 14: 29-36.
-
(2004)
Genome Res
, vol.14
, pp. 29-36
-
-
Wolf, Y.I.1
Rogozin, I.B.2
Koonin, E.V.3
|