-
1
-
-
0032502839
-
Contact order, transition state placement and the refolding rates of single domain proteins
-
Plaxco, K. W., Simons, K. T., and Baker, D. (1998) Contact Order, Transition State Placement and the Refolding Rates of Single Domain Proteins, J. Mol. Biol. 277, 985-994.
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 985-994
-
-
Plaxco, K.W.1
Simons, K.T.2
Baker, D.3
-
2
-
-
0034687123
-
Topology, stability, sequence, and length: Defining the determinants of two-state protein folding kinetics
-
Plaxco, K. W., Simons, K. T., Ruczinski, I., and Baker, D. (2000) Topology, Stability, Sequence, and Length: Defining the Determinants of Two-State Protein Folding Kinetics, Biochemistry 39, 11177-11183.
-
(2000)
Biochemistry
, vol.39
, pp. 11177-11183
-
-
Plaxco, K.W.1
Simons, K.T.2
Ruczinski, I.3
Baker, D.4
-
3
-
-
0035919635
-
Persistence of native-like topology in a denatured protein in 8 M urea
-
Shortle, D., and Ackerman, M. S. (2001) Persistence of Native-Like Topology in a Denatured Protein in 8 M Urea, Science 293, 487-489.
-
(2001)
Science
, vol.293
, pp. 487-489
-
-
Shortle, D.1
Ackerman, M.S.2
-
4
-
-
13844299144
-
The family feud: Do proteins with similar structures fold via the same pathway?
-
Zarrine-Afsar, A., Larson, S. M., and Davidson, A. R. (2005) The Family Feud: Do Proteins with Similar Structures Fold via the Same Pathway?, Curr. Opin. Struct. Biol. 15, 42-49.
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 42-49
-
-
Zarrine-Afsar, A.1
Larson, S.M.2
Davidson, A.R.3
-
5
-
-
0037423705
-
Structural analysis of the rate-limiting transition states in the folding of Im7 and Im9: Similarities and differences in the folding of homologous proteins
-
Friel, C. T., Capaldi, A. P., and Radford, S. E. (2003) Structural Analysis of the Rate-limiting Transition States in the Folding of Im7 and Im9: Similarities and Differences in the Folding of Homologous Proteins, J. Mol. Biol. 326, 293-305.
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 293-305
-
-
Friel, C.T.1
Capaldi, A.P.2
Radford, S.E.3
-
6
-
-
0028773153
-
Structural comparisons among the short-chain helical cytokines
-
Rozwarski, D. A., Gronenborn, A. M., Clore, G. M., Bazan, J. F., Bohm, A., Wlodawer, A., Hatada, M., and Karplus, P. A. (1994) Structural Comparisons among the Short-Chain Helical Cytokines, Structure 2, 159-173.
-
(1994)
Structure
, vol.2
, pp. 159-173
-
-
Rozwarski, D.A.1
Gronenborn, A.M.2
Clore, G.M.3
Bazan, J.F.4
Bohm, A.5
Wlodawer, A.6
Hatada, M.7
Karplus, P.A.8
-
7
-
-
0028774042
-
Salt bridge relay triggers defective LDL receptor binding by a mutant apolipoprotein
-
Wilson, C., Mau, T., Weisgraber, K. H., Wardell, M. R., Mahley, R. W., and Agard, D. A. (1994) Salt Bridge Relay Triggers Defective LDL Receptor Binding by a Mutant Apolipoprotein, Structure 2, 713-718.
-
(1994)
Structure
, vol.2
, pp. 713-718
-
-
Wilson, C.1
Mau, T.2
Weisgraber, K.H.3
Wardell, M.R.4
Mahley, R.W.5
Agard, D.A.6
-
8
-
-
0026598960
-
Human growth hormone and extracellular domain of its receptor: Crystal structure of the complex
-
de Vos, A. M., Ultsch, M., and Kossiakoff, A. A. (1992) Human Growth Hormone and Extracellular Domain of its Receptor: Crystal Structure of the Complex, Science 255, 306-312.
-
(1992)
Science
, vol.255
, pp. 306-312
-
-
De Vos, A.M.1
Ultsch, M.2
Kossiakoff, A.A.3
-
9
-
-
0001413894
-
The Helicobacter pylori neutrophil-activating protein is an iron-binding protein with dodecameric structure
-
Tonello, F., Dundon, W. G., Satin, B., Molinari, M., Tognon, G., Grandi, G., Del Giudice, G., Rappuoli, R., and Montecucco, C. (1999) The Helicobacter pylori Neutrophil-Activating Protein is an Iron-Binding Protein with Dodecameric Structure, Mol. Microbiol. 34, 238-246.
-
(1999)
Mol. Microbiol.
, vol.34
, pp. 238-246
-
-
Tonello, F.1
Dundon, W.G.2
Satin, B.3
Molinari, M.4
Tognon, G.5
Grandi, G.6
Del Giudice, G.7
Rappuoli, R.8
Montecucco, C.9
-
11
-
-
0034743349
-
Cytochrome c′ folding triggered by electron transfer: Fast and slow formation of four-helix bundles
-
Lee, J. C., Gray, H. B., and Winkler, J. R. (2001) Cytochrome c′ Folding Triggered by Electron Transfer: Fast and Slow Formation of Four-Helix Bundles, Proc. Natl. Acad. Sci. U.S.A. 98, 7760-7764.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 7760-7764
-
-
Lee, J.C.1
Gray, H.B.2
Winkler, J.R.3
-
12
-
-
0037069387
-
Structural features of cytochrome c′ folding intermediates revealed by fluorescence energy-transfer kinetics
-
Lee, J. C., Engman, K. C., Tezcan, F. A., Gray, H. B., and Winkler, J. R. (2002) Structural Features of Cytochrome c′ Folding Intermediates Revealed by Fluorescence Energy-Transfer Kinetics, Proc. Natl. Acad. Sci. U.S.A. 99, 14778-14782.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 14778-14782
-
-
Lee, J.C.1
Engman, K.C.2
Tezcan, F.A.3
Gray, H.B.4
Winkler, J.R.5
-
13
-
-
19944432188
-
562
-
562, J. Mol. Biol. 346, 331-344.
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 331-344
-
-
Garcia, P.1
Bruix, M.2
Rico, M.3
Ciofi-Baffoni4
Banci, L.5
Shastry, M.C.R.6
Roder, H.7
Woodyear, T.D.8
Johnson, C.M.9
Fersht, A.R.10
Barker, P.D.11
-
14
-
-
0032484030
-
Basis for monomer stabilization in Rhodopseudomonas palustris cytochrome c′ derived from the crystal structure
-
Shibata, N., Iba, S., Misaki, S., Meyer, T. E., Bartsch, R. G., Cusanovich, M. A., Morimoto, Y., Higuchi, Y., and Yasuoka, N. (1998) Basis for Monomer Stabilization in Rhodopseudomonas palustris Cytochrome c′ Derived from the Crystal Structure, J. Mol. Biol. 284, 751-760.
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 751-760
-
-
Shibata, N.1
Iba, S.2
Misaki, S.3
Meyer, T.E.4
Bartsch, R.G.5
Cusanovich, M.A.6
Morimoto, Y.7
Higuchi, Y.8
Yasuoka, N.9
-
15
-
-
1542298187
-
556
-
556, J. Biol. Inorg. Chem. 9, 224-230.
-
(2004)
J. Biol. Inorg. Chem.
, vol.9
, pp. 224-230
-
-
Bertini, I.1
Faraone-Mennella, J.2
Gray, H.B.3
Luchinat, C.4
Parigi, G.5
Winkler, J.R.6
-
16
-
-
0033529306
-
562
-
562, Biochemistry 38, 8657-8670.
-
(1999)
Biochemistry
, vol.38
, pp. 8657-8670
-
-
Arnesano, F.1
Banci, L.2
Bertini, I.3
Faraone-Mennella, J.4
Rosato, A.5
Barker, P.D.6
Fersht, A.R.7
-
17
-
-
11244338080
-
c-type cytochrome formation: Chemical and biological enigmas
-
Stevens, J. M., Daltrop, O., Allen, J. W. A., and Ferguson, S. J. (2004) c-Type Cytochrome Formation: Chemical and Biological Enigmas, Acc. Chem. Res. 37, 999-1007.
-
(2004)
Acc. Chem. Res.
, vol.37
, pp. 999-1007
-
-
Stevens, J.M.1
Daltrop, O.2
Allen, J.W.A.3
Ferguson, S.J.4
-
20
-
-
0034673133
-
562
-
562, Biochemistry 39, 1499-1514.
-
(2000)
Biochemistry
, vol.39
, pp. 1499-1514
-
-
Arnesano, F.1
Banci, L.2
Bertini, I.3
Ciofi-Baffoni, S.4
De Lumley Woodyear, T.5
Johnson, C.M.6
Barker, P.D.7
-
22
-
-
0346101796
-
562 variant with a c-type cytochrome CXXCH heme-binding motif as a probe of the Escherichia coli cytochrome c maturation system
-
562 Variant with a c-Type Cytochrome CXXCH Heme-Binding Motif as a Probe of the Escherichia coli Cytochrome c Maturation System, J. Biol. Chem. 278, 52075-52083.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 52075-52083
-
-
Allen, J.W.A.1
Barker, P.D.2
Ferguson, S.J.3
-
23
-
-
32544449369
-
The Escherichia coli cytochrome c maturation (Ccm) apparatus can mature cytochromes with an extra cysteine within or adjacent to the CXXCH motif
-
Allen, J. W. A., and Ferguson, S. J. (2006) The Escherichia coli Cytochrome c Maturation (Ccm) Apparatus Can Mature Cytochromes with an Extra Cysteine within or adjacent to the CXXCH Motif, Biochem. Soc. Trans. 34, 91-93.
-
(2006)
Biochem. Soc. Trans.
, vol.34
, pp. 91-93
-
-
Allen, J.W.A.1
Ferguson, S.J.2
-
25
-
-
18144362920
-
Early events in the folding of four-helix-bundle heme proteins
-
Faraone-Mennella, J., Gray, H. B., and Winkler, J. R. (2005) Early Events in the Folding of Four-Helix-Bundle Heme Proteins, Proc. Natl. Acad. Sci. U.S.A. 102, 6315-6319.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 6315-6319
-
-
Faraone-Mennella, J.1
Gray, H.B.2
Winkler, J.R.3
-
26
-
-
0037413451
-
Cloning, heterologous expression, and characterization of recombinant class II cytochromes from Rhodopseudomonas palustris
-
McGuirl, M. A., Lee, J. C., Lyubovitsky, J. G., Thanyakoop, C., Richards, J. H., Gray, H. B., and Winkler, J. R. (2003) Cloning, Heterologous Expression, and Characterization of Recombinant Class II Cytochromes from Rhodopseudomonas palustris, Biochim. Biophys. Acta 1619, 23-28.
-
(2003)
Biochim. Biophys. Acta
, vol.1619
, pp. 23-28
-
-
McGuirl, M.A.1
Lee, J.C.2
Lyubovitsky, J.G.3
Thanyakoop, C.4
Richards, J.H.5
Gray, H.B.6
Winkler, J.R.7
-
27
-
-
0015438810
-
The Preparation of guanidine hydrochloride
-
Nozaki, Y. (1972) The Preparation of Guanidine Hydrochloride, Methods Enzymol. 26, 43-50.
-
(1972)
Methods Enzymol.
, vol.26
, pp. 43-50
-
-
Nozaki, Y.1
-
28
-
-
9344230362
-
α-synuclein structures from fluorescence energy-transfer kinetics: Implications for the role of the protein in Parkinson's disease
-
Lee, J. C., Langen, R., Hummel, P. A., Gray, H. B., and Winkler, J. R. (2004) α-Synuclein Structures from Fluorescence Energy-Transfer Kinetics: Implications for the Role of the Protein in Parkinson's Disease, Proc. Natl. Acad. Sci. U.S.A. 101, 16466-16471.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 16466-16471
-
-
Lee, J.C.1
Langen, R.2
Hummel, P.A.3
Gray, H.B.4
Winkler, J.R.5
-
29
-
-
84981779372
-
Zwischenmolekulare energie wanderung und fluoreszenz
-
Förster, T. (1948) Zwischenmolekulare Energie Wanderung und Fluoreszenz, Ann. Phys. (Leipzig) 2, 55-75.
-
(1948)
Ann. Phys. (Leipzig)
, vol.2
, pp. 55-75
-
-
Förster, T.1
-
30
-
-
0030991352
-
Intrinsic fluorescence of hemoglobins and myoglobins
-
Gryczynski, Z., Lubkowski, J., and Bucci, E. (1997) Intrinsic Fluorescence of Hemoglobins and Myoglobins, Methods Enzymol. 278, 538-569.
-
(1997)
Methods Enzymol.
, vol.278
, pp. 538-569
-
-
Gryczynski, Z.1
Lubkowski, J.2
Bucci, E.3
-
31
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., and Minor, W. (1997) Processing of X-ray Diffraction Data Collected in Oscillation Mode, Methods Enzymol. 276, 307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
32
-
-
0028103275
-
The CCP4 suite-programs for protein crystallography
-
Bailey, S. (1994) The CCP4 Suite-Programs for Protein Crystallography, Acta Crystallogr. D 50, 760-763.
-
(1994)
Acta Crystallogr. D
, vol.50
, pp. 760-763
-
-
Bailey, S.1
-
34
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination, Acta Crystallogr. D 54, 905-921.
-
(1998)
Acta Crystallogr. D
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
35
-
-
0032790081
-
XtalView Xfit - A versatile program for manipulating atomic coordinates and electron density
-
McRee, D. E. (1999) XtalView Xfit-A Versatile Program for Manipulating Atomic Coordinates and Electron Density, J. Struct. Biol. 125, 156-165.
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 156-165
-
-
McRee, D.E.1
-
36
-
-
0000243829
-
PROCHECK-A program to check the stereochemical quality of protein structures
-
Laskowski, R. A., Macarthur, M. W., Moss, D. S., and Thornton, J. M. (1993) PROCHECK-A Program to Check the Stereochemical Quality of Protein Structures, J. Appl. Crystallogr. 26, 283-291.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
Macarthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
37
-
-
0032574759
-
Bacterial expression of a mitochondrial cytochrome c. Trimethylation of Lys72 in yeast iso-1-cytochrome c and the alkaline conformational transition
-
Pollock, W. B. R., Rosell, F. I., Twitchett, M. B., Dumont, M. E., and Mauk, A. G. (1998) Bacterial Expression of a Mitochondrial Cytochrome c. Trimethylation of Lys72 in Yeast iso-1-Cytochrome c and the Alkaline Conformational Transition, Biochemistry 37, 6124-6131.
-
(1998)
Biochemistry
, vol.37
, pp. 6124-6131
-
-
Pollock, W.B.R.1
Rosell, F.I.2
Twitchett, M.B.3
Dumont, M.E.4
Mauk, A.G.5
-
38
-
-
0037180383
-
Recombinant equine cytochrome c in Escherichia coli: High-level expression, characterization, and folding and assembly mutants
-
Rumbley, J. N., Hoang, L., and Englander, S. W. (2002) Recombinant Equine Cytochrome c in Escherichia coli: High-Level Expression, Characterization, and Folding and Assembly Mutants, Biochemistry 41, 13894-13901.
-
(2002)
Biochemistry
, vol.41
, pp. 13894-13901
-
-
Rumbley, J.N.1
Hoang, L.2
Englander, S.W.3
-
39
-
-
0034691660
-
Expression of prokaryotic and eukaryotic cytochromes c in Escherichia coli
-
Sanders, C., and Lill, H. (2000) Expression of Prokaryotic and Eukaryotic Cytochromes c in Escherichia coli, Biochim. Biophys. Acta Bioenerg. 1459, 131-138.
-
(2000)
Biochim. Biophys. Acta Bioenerg.
, vol.1459
, pp. 131-138
-
-
Sanders, C.1
Lill, H.2
-
40
-
-
0036671471
-
Cytochrome c maturation: A complex pathway for a simple task?
-
Thöny-Meyer, L. (2002) Cytochrome c Maturation: a Complex Pathway for a Simple Task?, Biochem. Soc. Trans. 30, 633-638.
-
(2002)
Biochem. Soc. Trans.
, vol.30
, pp. 633-638
-
-
Thöny-Meyer, L.1
-
41
-
-
0031875674
-
Molecular mechanisms of cytochrome c biogenesis: Three distinct systems
-
Kranz, R., Lill, R., Goldman, B., Bonnard, G., and Merchant, S. (1998) Molecular Mechanisms of Cytochrome c Biogenesis: Three Distinct Systems, Mol. Microbiol. 29, 383-396.
-
(1998)
Mol. Microbiol.
, vol.29
, pp. 383-396
-
-
Kranz, R.1
Lill, R.2
Goldman, B.3
Bonnard, G.4
Merchant, S.5
-
42
-
-
4444368232
-
Biosynthesis of artificial microperoxidases by exploiting the secretion and cytochrome c maturation apparatuses of Escherichia coli
-
Braun, M., and Thöny-Meyer, L. (2004) Biosynthesis of Artificial Microperoxidases by Exploiting the Secretion and Cytochrome c Maturation Apparatuses of Escherichia coli, Proc. Natl. Acad. Sci. U.S.A. 101, 12830-12835.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 12830-12835
-
-
Braun, M.1
Thöny-Meyer, L.2
-
43
-
-
0034489319
-
552 synthesized by Escherichia coli cells expressing the host-specific cytochrome c maturation genes, ccmABCDEFGH: Biochemical, spectral, and structural characterization of the recombinant proteins
-
552 Synthesized by Escherichia coli Cells Expressing the Host-Specific Cytochrome c Maturation Genes, ccmABCDEFGH: Biochemical, Spectral, and Structural Characterization of the Recombinant Proteins, Protein Sci. 9, 2074-2084.
-
(2000)
Protein Sci.
, vol.9
, pp. 2074-2084
-
-
Fee, J.A.1
Chen, Y.2
Todaro, T.R.3
Bren, K.L.4
Patel, K.M.5
Hill, M.G.6
Ester, G.-M.7
Loehr, T.M.8
Ai, J.9
Thöny-Meyer, L.10
Williams, P.A.11
Stura, E.12
Sridhar, V.13
McRee, D.E.14
-
44
-
-
0034624393
-
A computational study of cation-Pi interactions vs salt bridges in aqueous media: Implications for protein engineering
-
Gallivan, J. P., and Dougherty, D. A. (2000) A Computational Study of Cation-Pi Interactions vs Salt Bridges in Aqueous Media: Implications for Protein Engineering, J. Am. Chem. Soc. 122, 870-874.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 870-874
-
-
Gallivan, J.P.1
Dougherty, D.A.2
-
45
-
-
25844511123
-
High thermal stability imparted by a designed tandem arg-Trp stretch in an alpha-helical coiled coil
-
Sakurai, K., Mizuno, T., Hiroaki, H., Gohda, K., Oku, J., and Tanaka, T. (2005) High Thermal Stability Imparted by a Designed Tandem Arg-Trp Stretch in an Alpha-Helical Coiled Coil, Angew. Chem., Int. Ed. 44, 6180-6183.
-
(2005)
Angew. Chem., Int. Ed.
, vol.44
, pp. 6180-6183
-
-
Sakurai, K.1
Mizuno, T.2
Hiroaki, H.3
Gohda, K.4
Oku, J.5
Tanaka, T.6
-
46
-
-
9144222610
-
Aromatic interactions in peptides: Impact on structure and function
-
Waters, M. L. (2004) Aromatic Interactions in Peptides: Impact on Structure and Function, Biopolymers 76, 435-445.
-
(2004)
Biopolymers
, vol.76
, pp. 435-445
-
-
Waters, M.L.1
-
47
-
-
0023653927
-
Simultaneous determination of hemes a, b, and c from pyridine hemochrome spectra
-
Berry, E. A., and Trumpower, B. L. (1987) Simultaneous Determination of Hemes a, b, and c from Pyridine Hemochrome Spectra, Anal. Biochem. 161, 1-15.
-
(1987)
Anal. Biochem.
, vol.161
, pp. 1-15
-
-
Berry, E.A.1
Trumpower, B.L.2
-
49
-
-
0015154226
-
The existence of heme-protein coordinate-covalent bonds in denaturing solvents
-
Babul, J., and Stellwagen, E. (1971) The Existence of Heme-Protein Coordinate-Covalent Bonds in Denaturing Solvents, Biopolymers 10, 2359-2361.
-
(1971)
Biopolymers
, vol.10
, pp. 2359-2361
-
-
Babul, J.1
Stellwagen, E.2
-
50
-
-
0030816577
-
Identification of the predominant non-native histidine ligand in unfolded cytochrome c
-
Colon, W., Wakem, L. P., Sherman, F., and Roder, H. (1997) Identification of the Predominant Non-Native Histidine Ligand in Unfolded Cytochrome c, Biochemistry 36, 12535-12541.
-
(1997)
Biochemistry
, vol.36
, pp. 12535-12541
-
-
Colon, W.1
Wakem, L.P.2
Sherman, F.3
Roder, H.4
-
53
-
-
17044438189
-
A protein folding pathway with multiple folding intermediates at atomic resolution
-
Feng, H., Zhou, Z., and Bai, Y. (2005) A Protein Folding Pathway with Multiple Folding Intermediates at Atomic Resolution, Proc. Natl. Acad. Sci. U.S.A. 102, 5026-5031.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 5026-5031
-
-
Feng, H.1
Zhou, Z.2
Bai, Y.3
|