Hitchhiking Trypanosoma cruzi minicircle DNA affects gene expression in human host cells via LINE-1 retrotransposon

Memorias do Instituto Oswaldo Cruz

Volumn 101, Issue 8, 2006, Pages 833-843

  Simões Barbosa, Augusto ^a   Argañaraz, Enrique R ^a   Barros, Ana Maria ^a   Rosa, Ana De Cássia ^a   Alves, Nivaldo P ^b   Louvandini, Patrícia ^a   D'Souza Ault, Marian R ^a   Nitz, Nadjar ^a   Sturm, Nancy R ^c   Nascimento, Rubens J ^a   Teixeira, Antonio R L ^a  

^a UNIVERSITY OF BRASILIA   (Brazil)

^b Tecnogene Laboratório de Diagnóstico Molecular Ltda   (Brazil)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Horizontal transfer; Kinetoplast; Mutagenesis; p15; Pathogenesis; Retrotransposition

Indexed keywords

TRYPANOSOMA CRUZI;

EID: 33748105747     PISSN: 00740276     EISSN: 16788060     Source Type: Journal    
DOI: 10.1590/S0074-02762006000800003     Document Type: Article

References (44)

1. Anonymous 1999. Recommendations from a satellite meeting. Mem Inst Oswaldo Cruz 94: 429-432.
2. Avila HA, Simpson L 1995. Organization and complexity of minicircle-encoded guide RNAs in Trypanosoma cruzi. RNA 1: 939-947.
3. Babushok DV, Ostertag EM, Courtney CE, Choi JM, Kazazian Jr HH 2006. L1 integration in a transgenic mouse model. Genome Res 16: 240-250.
4. Beckmann JS, Webber JL 1992. Survey of human and rat micorssatellites. Genomics 12: 627-631.
5. Bell B, Nievas P, Abecia E, Martinez-Jarreta B, Hinojal R, Martinez-Cordero A 2000. Population genetics of the STR loci HUMCSFIPO. HUMF13A01, HUMFES/FPS and D12391 in Asturias (Northern Spain). Forensic Sci Internl 113: 21-23.
6. Brisse S, Henriksson J, Barnabé C, Douzery EJ, Berkvens D, Serrano M, De Carvalho MR, Buck GA, Dujardin JC, Tibayrenc M 2003. Evidence for genetic exchange and hybridization in Trypanosoma cruzi based on nucleotide sequences and molecular karyotype. Infect Genet Evol 2: 173-183.
7. Campbell DA, Westenberger SJ, Sturm NR 2004. The determinants of Chagas disease: connecting parasite and host genetics. Curr Mol Med 4: 549-562.
8. Cassavant NC, Scott L, Cantrell MA, Wiggins LE, Baker RJ, Wichman HA 2000. The end of the LINE?: Lack of recent L1 activity in a group of South American rodents. Genetics 154: 1809-1817.
9. Feng Q, Moran J, Kazazian H, Boeke JD 1996. Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell 87: 905-916.
10. Fukuda A, Tokonabe S, Hamada M, Matsumoto M, Tsukui T, Nogi Y, Hisatake K 2003. Alleviation of PC4-mediated transcriptional repression by the ERCC3 helicase activity of general transcription factor TFHH. J Biol Chem 278: 14827-14831.
11. Gilbert N, Lutz-Prigge S, Moran JV 2002. Genomic deletions created upon LINE-1 retrotransposition. Cell 110: 315-325.
12. Han JS, Szak ST, Boeke JD 2005. Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes Nature 429: 270-274.
13. Inácio A, Silva AL, Pinto J, Ji Xx, Morgado A, Almeida F, Faustino P, Lavinha J, Liebhaber SA, Romao L 2004. Non-sense mutations in close proximity to the initiation codon fail to trigger full nonsense-mediated mRNA decay. J Biol Chem 279: 32170-32180.
14. International Human Genome Sequencing Consortium 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-927.
15. Junqueira AC, Degrave W, Brandão A 2005. Minicircle organization and diversity in Trypanosoma cruzi populations. Trends Parasitol 21: 270-272.
16. Kadlec J, Izaurralde E, Cusack S 2004. The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3 Nat Struct Mol Biol 11: 330-337.
17. Kazazian Jr HH 2000. L1 retrotransposons shape the mammalian genome. Science 289: 1152-1156.
18. Lauria-Pires L, Braga MS, Vexenat AC, Nitz N, Simões-Barbosa A, Tinoco DL, Teixeira ARL 2000. Progressive chronic Chagas heart disease ten years after treatment with anti-Trypanosoma cruzi nitroderivatives. Am J Trop Med Hyg 63: 111-118.
19. Liang P, Pardee AB 1992. Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257: 967-971.
20. Liu B, Liu Y, Motyka SA, Agbo EE, Englund PT 2005. Fellowship of the rings: the replication of kinetoplast DNA. Trends Parasitol 21: 363-369.
21. Lukes J, Guilbride DL, Votypka J, Zikova A, Benne R, Englund PT 2002. Kinetoplast DNA network: evolution of an improbable structure. Eukaryot Cell 1: 495-502.
22. Lukka M, Tasa G, Ellonen P, Moilanen K, Vassiljev V, Ulmanen I 2005. Triallelic patterns in STR loci used for paternity analysis: Evidence for a duplication in chromosome 2 containing the TPOX STR locus. Forensic Sci Internl (Epub ahead of print).
23. Machado CA, Ayala FJ 2001. Nucleotide sequences provide evidence of genetic exchange among distantly related lineages of Trypanosoma cruzi. Proc Natl Acad Sci USA 98: 7396-7401.
24. Marcus E 2005. Retraction controversy. Cell 123: 173-175.
25. Moser DR, Kirchhoff LV, Donelson JE. 1989. Detection of Trypanosoma cruzi by DNA amplification using the polymerase chain reaction. J Clin Microbiol 27: 1477-1482.
26. Mukherjee KK, Biswas R 2005. Short tandem repeat (STRs) and sex specific Amelogenin analysis of blood samples from neurosurgical female transfused patients. J Clin Forensic Med 12: 10-13.
27. Nitz N, Gomes C, Rosa AC, D'Souza-Ault MR, Moreno F, Lauria-Pires L, Nascimento RJ, Teixeira ARL 2004. Heritable integration of kDNA minicircle sequences from Trypanosoma cruzi into the avian genome: Insights into human Chagas Disease. Cell 118: 175-186.
28. Ostertag EM, Kazazian HH Jr 2001. Biology of mammalian L1 retrotransposons. Ann Rev Genet 35: 501-508.
29. Pavlícek A, Paces J, Elleder D, Hejnar J 2002a. Processed pseudogenes of human endogenous retroviruses generated by LINEs: Their integration, stability, and distribution. Genome Res 12: 391-399.
30. Pavlícek A, Paces J, Z1ka R, Hejnar J 2002b. Length distribution of long interspersed nuclear elements (LINEs) and processed pseudogenes of human endogenous retroviruses: implications for retrotransposition and pseudogene detection. Gene 300: 189-194.
31. Razin SV, Ioudinkova ES, Trifonov ED, Scherrer K 2001. Non-clonability correlates with genomic instability: A case study of a unique DNA region. J Mol Biol 307: 481-486.
32. Simonson AB, Servin JA, Skophammer RG, Herbold CW, Rivera MC, Lake JA 2005. Decoding the genomic tree of life. Proc Natl Acd Sci USA 102: 6608-6613.
33. Simpson AGB, Gill EE, Callahan HA, Litaker RW, Roger AJ 2004. Early evolution within kinetoplastids (Euglenozoa), and the late emergence of trypanosomatids. Protist 155: 407-422.
34. Sligtom JR, Bock JH, Tagle DA, Gumucio DL, Goodman M, Stojanovic N, Jackson J, Miller W, Hardison R 1997. The complete sequence of the galago and rabbit β-globin locus control regions: Extended sequence and functional conservation outside the cores of DNAse hypersensitive sites. Genomics 39: 90-94.
35. Smit AFA, Toth G, Riggs AD, Jurka J 1995. Ancestral mammalian wide subfamilies of LINE-1 repetitive sequences. J Mol Biol 246: 401-417.
36. Sturm NR, Degrave W, Morel C, Simpson L 1989. Sensitive detection and schizodeme classification of Trypanosoma cruzi cells by amplification of kinetoplast minicircle DNA sequences: use in diagnosis of Chagas disease. Mol Biochem Parasitol 33: 205-214.
37. Symer DE, Connely C, Szak ST, Capúto EM, Cost GJ, Parmigiani G, Boeke JD 2002. Human L1 retrotransposition is associated with genetic instability in vivo. Cell 110: 327-338.
38. Thertulien R, Simpson-Hidaris PG, Hidaris CG 1994. Intracellular localization of a Trypanosoma cruzi kDNA minicircle transcript using RNA:RNA in situ hybridization. J Eukariotic Microbiol 41: 402-407.
39. Teixeira ARL, Argañaraz ER, Freitas Jr LH, Lacava ZGM, Santana JM, Luna H 1994. Possible integration of Trypanosoma cruzi kDNA minicircles into the host cell genome by infection. Mut Res 305: 197-209.
40. Teixeira ARL, Nascimento RJ, Sturm NR 2006. Evolution and pathology in Chagas disease. Mem Inst Oswaldo Cruz 101: 463-491.
41. Venter CG, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA 2001. The sequence of the human genome. Science 291: 1304-1351.
42. Westenberger SJ, Barnabé C, Campbell DA, Sturm NR 2005. Two hybridization events define the population structure of Trypanosoma cruzi. Genetics 171: 527-543.
43. WHO-World Health Organization 1996. The Global Burden of Disease, In C Murray, A Lopez (eds), Geneva, Switzerland. Vol. I, chapter 5, p. 245-293.
44. WHO-World Health Organization 2002. Control of Chagas. disease: second report of a WHO Expert Committee. Wld Hlth Org Tech Rep Ser 905: 1-109.