메뉴 건너뛰기




Volumn 411, Issue , 2006, Pages 282-311

[15] Extrapolating Traditional DNA Microarray Statistics to Tiling and Protein Microarray Technologies

Author keywords

[No Author keywords available]

Indexed keywords

ANALYSIS OF VARIANCE; BIOINFORMATICS; CONCENTRATION (PARAMETERS); DNA MICROARRAY; GENETIC ANALYSIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN MICROARRAY; RANK SUM TEST; REVIEW; SCIENTIFIC LITERATURE; STATISTICAL ANALYSIS; STATISTICAL SIGNIFICANCE; STATISTICS; STUDENT T TEST; WILCOXON SIGNED RANKS TEST; ANIMAL; HUMAN; METHODOLOGY;

EID: 33747879965     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(06)11015-0     Document Type: Review
Times cited : (13)

References (36)
  • 1
    • 0034948896 scopus 로고    scopus 로고
    • A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
    • Baldi P., and Long A. A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes. Bioinformatics 17 6 (2001) 509-519
    • (2001) Bioinformatics , vol.17 , Issue.6 , pp. 509-519
    • Baldi, P.1    Long, A.2
  • 2
    • 23444440190 scopus 로고    scopus 로고
    • Applications of DNA tiling arrays to experimental genome annotation and regulatory pathway discovery
    • Bertone P., Gerstein M., and Synder M. Applications of DNA tiling arrays to experimental genome annotation and regulatory pathway discovery. Chromosome Res. 13 3 (2005) 259-274
    • (2005) Chromosome Res. , vol.13 , Issue.3 , pp. 259-274
    • Bertone, P.1    Gerstein, M.2    Synder, M.3
  • 4
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad B., Irizarry R., Astrand M., and Speed T. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19 2 (2003) 185-193
    • (2003) Bioinformatics , vol.19 , Issue.2 , pp. 185-193
    • Bolstad, B.1    Irizarry, R.2    Astrand, M.3    Speed, T.4
  • 9
    • 22144461265 scopus 로고    scopus 로고
    • Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset
    • Choe S., Boutros M., Michelson A., Church G., and Halfon M. Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset. Genome Biol. 6 2 (2005) R16
    • (2005) Genome Biol. , vol.6 , Issue.2
    • Choe, S.1    Boutros, M.2    Michelson, A.3    Church, G.4    Halfon, M.5
  • 10
    • 84954964873 scopus 로고
    • Lowess: A program for smoothing scatterplots by robust locally weighted regression
    • Cleveland W.S. Lowess: A program for smoothing scatterplots by robust locally weighted regression. Am. Stat. 35 (1981) 54
    • (1981) Am. Stat. , vol.35 , pp. 54
    • Cleveland, W.S.1
  • 11
    • 0036855423 scopus 로고    scopus 로고
    • SNOMAD (Standardization and NOrmalization of MicroArray Data): Web-accessible gene expression data analysis
    • Colantuoni C., Henry G., Zeger S., and Pevsner J. SNOMAD (Standardization and NOrmalization of MicroArray Data): Web-accessible gene expression data analysis. Bioinformatics 18 11 (2002) 1540-1541
    • (2002) Bioinformatics , vol.18 , Issue.11 , pp. 1540-1541
    • Colantuoni, C.1    Henry, G.2    Zeger, S.3    Pevsner, J.4
  • 12
    • 0026108692 scopus 로고
    • Light-directed, spatially addressable parallel chemical synthesis
    • Fodor S., Read J., Pirrung M., Stryer L., Lu A., and Solas D. Light-directed, spatially addressable parallel chemical synthesis. Science 251 4995 (1991) 767-773
    • (1991) Science , vol.251 , Issue.4995 , pp. 767-773
    • Fodor, S.1    Read, J.2    Pirrung, M.3    Stryer, L.4    Lu, A.5    Solas, D.6
  • 13
    • 0037076772 scopus 로고    scopus 로고
    • Profound effect of normalization on detection of differentially expressed genes in oligonucleotide microarray data analysis
    • RESEARCH0033
    • Hoffmann R., Seidl T., and Dugas M. Profound effect of normalization on detection of differentially expressed genes in oligonucleotide microarray data analysis. Genome Biol. 3 7 (2002) RESEARCH0033
    • (2002) Genome Biol. , vol.3 , Issue.7
    • Hoffmann, R.1    Seidl, T.2    Dugas, M.3
  • 14
    • 0036270889 scopus 로고    scopus 로고
    • ChIP-chip: A genomic approach for identifying transcription factor binding sites
    • Horak C., and Snyder M. ChIP-chip: A genomic approach for identifying transcription factor binding sites. Methods Enzymol. 350 (2002) 469-483
    • (2002) Methods Enzymol. , vol.350 , pp. 469-483
    • Horak, C.1    Snyder, M.2
  • 15
  • 16
    • 0035945567 scopus 로고    scopus 로고
    • Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
    • Iyer V., Horak C., Scafe C., Botstein D., Snyder M., and Brown P. Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. Nature 409 6819 (2001) 533-538
    • (2001) Nature , vol.409 , Issue.6819 , pp. 533-538
    • Iyer, V.1    Horak, C.2    Scafe, C.3    Botstein, D.4    Snyder, M.5    Brown, P.6
  • 18
    • 0346021343 scopus 로고    scopus 로고
    • Linear models for microarray data analysis: Hidden similarities and differences
    • Kerr M. Linear models for microarray data analysis: Hidden similarities and differences. J. Comput. Biol. 10 6 (2003) 891-901
    • (2003) J. Comput. Biol. , vol.10 , Issue.6 , pp. 891-901
    • Kerr, M.1
  • 19
    • 0034927555 scopus 로고    scopus 로고
    • Analysis of variance for gene expression microarray data
    • Kerr M., Martin M., and Churchill G. Analysis of variance for gene expression microarray data. J. Comput. Biol. 7 6 (2000) 819-837
    • (2000) J. Comput. Biol. , vol.7 , Issue.6 , pp. 819-837
    • Kerr, M.1    Martin, M.2    Churchill, G.3
  • 20
    • 9444236735 scopus 로고    scopus 로고
    • Relationship between gene co-expression and probe localization on microarray slides
    • Kluger Y., Yu H., Qian J., and Gerstein M. Relationship between gene co-expression and probe localization on microarray slides. BMC Genom. 4 1 (2003) 49
    • (2003) BMC Genom. , vol.4 , Issue.1 , pp. 49
    • Kluger, Y.1    Yu, H.2    Qian, J.3    Gerstein, M.4
  • 21
    • 84984933234 scopus 로고    scopus 로고
    • High density synthetic oligonucleotide arrays
    • Lipshutz R., Fodor S., Gingeras T., and Lockhart D. High density synthetic oligonucleotide arrays. Nature Genet. 21 Suppl. 1 (1999) 20-24
    • (1999) Nature Genet. , vol.21 , Issue.SUPPL. 1 , pp. 20-24
    • Lipshutz, R.1    Fodor, S.2    Gingeras, T.3    Lockhart, D.4
  • 25
    • 0038002409 scopus 로고    scopus 로고
    • Identification and correction of spurious spatial correlations in microarray data
    • 46, 48
    • Qian J., Kluger Y., Yu H., and Gerstein M. Identification and correction of spurious spatial correlations in microarray data. Biotechniques 35 1 (2003) 42-44, 46, 48
    • (2003) Biotechniques , vol.35 , Issue.1 , pp. 42-44
    • Qian, J.1    Kluger, Y.2    Yu, H.3    Gerstein, M.4
  • 26
    • 0036898577 scopus 로고    scopus 로고
    • Microarray data normalization and transformation
    • Quackenbush J. Microarray data normalization and transformation. Nature Genet. 32 Suppl (2002) 496-501
    • (2002) Nature Genet. , vol.32 , Issue.SUPPL , pp. 496-501
    • Quackenbush, J.1
  • 27
    • 2942585589 scopus 로고    scopus 로고
    • Major molecular differences between mammalian sexes are involved in drug metabolism and renal function
    • Rinn J., Rozowsky J., Laurenzi I., Petersen P., Zou K., Zhong W., Gerstein M., and Snyder M. Major molecular differences between mammalian sexes are involved in drug metabolism and renal function. Dev. Cell 6 6 (2004) 791-800
    • (2004) Dev. Cell , vol.6 , Issue.6 , pp. 791-800
    • Rinn, J.1    Rozowsky, J.2    Laurenzi, I.3    Petersen, P.4    Zou, K.5    Zhong, W.6    Gerstein, M.7    Snyder, M.8
  • 29
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena M., Shalon D., Davis R., and Brown P. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270 5235 (1995) 467-470
    • (1995) Science , vol.270 , Issue.5235 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.3    Brown, P.4
  • 30
    • 0034911875 scopus 로고    scopus 로고
    • An efficient and robust statistical modeling approach to discover differentially expressed genes using genomic expression profiles
    • Thomas J., Olson J., Tapscott S., and Zhao L. An efficient and robust statistical modeling approach to discover differentially expressed genes using genomic expression profiles. Genome Res. 11 7 (2001) 1227-1236
    • (2001) Genome Res. , vol.11 , Issue.7 , pp. 1227-1236
    • Thomas, J.1    Olson, J.2    Tapscott, S.3    Zhao, L.4
  • 31
    • 0036856209 scopus 로고    scopus 로고
    • Nonparametric methods for identifying differentially expressed genes in microarray data
    • Troyanskaya O., Garber M., Brown P., Botstein D., and Altman R. Nonparametric methods for identifying differentially expressed genes in microarray data. Bioinformatics 18 11 (2002) 1454-1461
    • (2002) Bioinformatics , vol.18 , Issue.11 , pp. 1454-1461
    • Troyanskaya, O.1    Garber, M.2    Brown, P.3    Botstein, D.4    Altman, R.5
  • 32
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher V., Tibshirani R., and Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. USA 98 9 (2001) 5116-5121
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , Issue.9 , pp. 5116-5121
    • Tusher, V.1    Tibshirani, R.2    Chu, G.3
  • 34
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • Yang Y., Dudoit S., Luu P., Lin D., Peng V., Ngai J., and Speed T. Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res. 30 4 (2002) e15
    • (2002) Nucleic Acids Res. , vol.30 , Issue.4
    • Yang, Y.1    Dudoit, S.2    Luu, P.3    Lin, D.4    Peng, V.5    Ngai, J.6    Speed, T.7
  • 36


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.