메뉴 건너뛰기




Volumn 3, Issue 11, 2002, Pages

Within the fold: assessing differential expression measures and reproducibility in microarray assays

Author keywords

Additional Data File; Array Element; Expression Ratio; Hybridization Assay; Microarray Assay

Indexed keywords

COMPLEMENTARY DNA; RNA;

EID: 0037167899     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2002-3-11-research0062     Document Type: Article
Times cited : (298)

References (22)
  • 1
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • PID: 7569999, COI: 1:CAS:528:DyaK2MXovVersLk%3D
    • Schena M, Shalon D, Davis RW, Brown PO: Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science. 1995, 270: 467-470. DOI: 10.1126/science.270.5235.467
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 2
    • 0029748326 scopus 로고    scopus 로고
    • Parallel human genome analysis: microarray-based expression monitoring of 1000 genes
    • PID: 8855227, COI: 1:CAS:528:DyaK28XmtVOlsbo%3D
    • Schena M, Shalon D, Heller R, Chai A, Brown PO, Davis RW: Parallel human genome analysis: microarray-based expression monitoring of 1000 genes. Proc Natl Acad Sci USA. 1996, 93: 10614-10619. 10.1073/pnas.93.20.10614. DOI: 10.1073/pnas.93.20.10614
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 10614-10619
    • Schena, M.1    Shalon, D.2    Heller, R.3    Chai, A.4    Brown, P.O.5    Davis, R.W.6
  • 3
    • 85182624297 scopus 로고    scopus 로고
    • Stratagene. [http://www.stratagene.com]
    • Stratagene
  • 4
    • 0033031437 scopus 로고    scopus 로고
    • DNA arrays for analysis of gene expression
    • PID: 10349646, COI: 1:CAS:528:DyaK1MXltFOns7o%3D
    • Eisen MB, Brown PO: DNA arrays for analysis of gene expression. Methods Enzymol. 1999, 303: 179-205. DOI: 10.1016/S0076-6879(99)03014-1
    • (1999) Methods Enzymol , vol.303 , pp. 179-205
    • Eisen, M.B.1    Brown, P.O.2
  • 6
    • 84947318637 scopus 로고
    • Locally weighted linear regression: an approach to regression analysis by local fitting
    • Cleveland W, Devlin S: Locally weighted linear regression: an approach to regression analysis by local fitting. J Am Stat Assoc. 1988, 83: 596-609. DOI: 10.1080/01621459.1988.10478639
    • (1988) J Am Stat Assoc , vol.83 , pp. 596-609
    • Cleveland, W.1    Devlin, S.2
  • 7
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
    • PID: 11842121
    • Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP: Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res. 2002, 30: e15-10.1093/nar/30.4.e15. DOI: 10.1093/nar/30.4.e15
    • (2002) Nucleic Acids Res , vol.30
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5    Ngai, J.6    Speed, T.P.7
  • 8
    • 0036376993 scopus 로고    scopus 로고
    • Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
    • Dudoit S, Yang YH, Callow M, Speed T: Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Statistica Sinica. 2002, 12: 111-139.
    • (2002) Statistica Sinica , vol.12 , pp. 111-139
    • Dudoit, S.1    Yang, Y.H.2    Callow, M.3    Speed, T.4
  • 10
    • 0035687492 scopus 로고    scopus 로고
    • Identifying differentially expressed genes in cDNA microarray experiments
    • PID: 11747617, COI: 1:CAS:528:DC%2BD3MXpt1Gns74%3D
    • Baggerly KA, Coombes KR, Hess KR, Stivers DN, Abruzzo LV, Zhang W: Identifying differentially expressed genes in cDNA microarray experiments. J Comput Biol. 2001, 8: 639-659. 10.1089/106652701753307539. DOI: 10.1089/106652701753307539
    • (2001) J Comput Biol , vol.8 , pp. 639-659
    • Baggerly, K.A.1    Coombes, K.R.2    Hess, K.R.3    Stivers, D.N.4    Abruzzo, L.V.5    Zhang, W.6
  • 12
    • 0034921979 scopus 로고    scopus 로고
    • Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data
    • PID: 11382363, COI: 1:CAS:528:DC%2BD3MXis1KktrY%3D
    • Ideker T, Thorsson V, Siegel AF, Hood LE: Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data. J Comput Biol. 2000, 7: 805-817. 10.1089/10665270050514945. DOI: 10.1089/10665270050514945
    • (2000) J Comput Biol , vol.7 , pp. 805-817
    • Ideker, T.1    Thorsson, V.2    Siegel, A.F.3    Hood, L.E.4
  • 13
    • 0034923013 scopus 로고    scopus 로고
    • On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data
    • PID: 11339905, COI: 1:CAS:528:DC%2BD3MXmsFKms7s%3D
    • Newton MA, Kendziorski CM, Richmond CS, Blattner FR, Tsui KW: On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data. J Comput Biol. 2001, 8: 37-52. 10.1089/106652701300099074. DOI: 10.1089/106652701300099074
    • (2001) J Comput Biol , vol.8 , pp. 37-52
    • Newton, M.A.1    Kendziorski, C.M.2    Richmond, C.S.3    Blattner, F.R.4    Tsui, K.W.5
  • 14
    • 0035684378 scopus 로고    scopus 로고
    • A model for measurement error for gene expression arrays
    • PID: 11747612, COI: 1:CAS:528:DC%2BD3MXpt1Gnsrs%3D
    • Rocke DM, Durbin B: A model for measurement error for gene expression arrays. J Comput Biol. 2001, 8: 557-569. 10.1089/106652701753307485. DOI: 10.1089/106652701753307485
    • (2001) J Comput Biol , vol.8 , pp. 557-569
    • Rocke, D.M.1    Durbin, B.2
  • 15
    • 4243636853 scopus 로고    scopus 로고
    • National Center for Biotechnology Information: Digital Differential Display. [http://www.ncbi.nlm.nih.gov/UniGene/info_ddd.shtml]
    • Digital Differential Display
  • 18
    • 0034947910 scopus 로고    scopus 로고
    • Optimized growth conditions for direct amplification of cDNA clone inserts from culture
    • PID: 11464517, COI: 1:CAS:528:DC%2BD3MXltVekt74%3D
    • Gaspard R, Dharap S, Malek J, Qi R, Quackenbush J: Optimized growth conditions for direct amplification of cDNA clone inserts from culture. Biotechniques. 2001, 31: 35-36.
    • (2001) Biotechniques , vol.31 , pp. 35-36
    • Gaspard, R.1    Dharap, S.2    Malek, J.3    Qi, R.4    Quackenbush, J.5
  • 22
    • 85182632562 scopus 로고    scopus 로고
    • Primer 3. [http://www-genome.wi.mit.edu/cgi-bin/primer/primer3.cgi#PRIMER_SELF_ANY]
    • Primer , vol.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.