메뉴 건너뛰기




Volumn 22, Issue 14, 2006, Pages

Computational inference of the molecular logic for synaptic connectivity in C. elegans

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; BRAIN NERVE CELL; CAENORHABDITIS ELEGANS; COMPUTER ANALYSIS; CONFERENCE PAPER; CONTROLLED STUDY; ENTROPY; GAP JUNCTION; GENE EXPRESSION; INFORMATION PROCESSING; INFORMATION SCIENCE; METHODOLOGY; MOLECULAR BIOLOGY; MULTIVARIATE ANALYSIS; NONHUMAN; PARSIMONY ANALYSIS; PREDICTION; PRIORITY JOURNAL; SYNAPSE; SYSTEMS BIOLOGY; VALIDATION PROCESS;

EID: 33747872850     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl224     Document Type: Conference Paper
Times cited : (60)

References (47)
  • 2
    • 0003567872 scopus 로고
    • A Logic minimization algorithms for VLSI minimization Kluwer
    • Brayton,R.K. et al. (1985) A Logic minimization algorithms for VLSI minimization Kluwer.
    • (1985)
    • Brayton, R.K.1
  • 3
    • 33645297713 scopus 로고    scopus 로고
    • Wiring optimization can relate neuronal structure and function
    • Chen,B.L et al. (2006) Wiring optimization can relate neuronal structure and function. Proc. Natl. Acad. Sci. USA, 103, 4723-4728.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 4723-4728
    • Chen, B.L.1
  • 4
    • 21044431735 scopus 로고    scopus 로고
    • Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
    • Cheng,J. et al. (2005) Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science, 308, 1149-1154.
    • (2005) Science , vol.308 , pp. 1149-1154
    • Cheng, J.1
  • 5
    • 0242391983 scopus 로고    scopus 로고
    • Sperry and Hebb: Oil and vinegar?
    • Cline,H. (2003) Sperry and Hebb: Oil and vinegar? Trends Neurosci, 26, 655-661.
    • (2003) Trends Neurosci , vol.26 , pp. 655-661
    • Cline, H.1
  • 7
    • 0035369112 scopus 로고    scopus 로고
    • NMDA receptor subunits: Diversity, development and disease
    • Cull-Candy,S. et al. (2001) NMDA receptor subunits: Diversity, development and disease. Curr. Opin. Neurobiol., 11, 327-335.
    • (2001) Curr. Opin. Neurobiol. , vol.11 , pp. 327-335
    • Cull-Candy, S.1
  • 8
    • 0033635736 scopus 로고    scopus 로고
    • EphB receptors interact with NMDA receptors and regulate excitatory synapse formation
    • Dalva,M.B. et al. (2000) EphB receptors interact with NMDA receptors and regulate excitatory synapse formation. Cell, 103, 945-956.
    • (2000) Cell , vol.103 , pp. 945-956
    • Dalva, M.B.1
  • 9
    • 0037032812 scopus 로고    scopus 로고
    • Molecular mechanisms of axon guidance
    • Dickson,B.J. (2002) Molecular mechanisms of axon guidance. Science, 298, 1959-1964.
    • (2002) Science , vol.298 , pp. 1959-1964
    • Dickson, B.J.1
  • 10
    • 25444481075 scopus 로고    scopus 로고
    • A gene expression fingerprint of C. elegans embryonic motor neurons
    • Fox,R.M. et al. (2005) A gene expression fingerprint of C. elegans embryonic motor neurons. BMC Genomics, 6, 42-65.
    • (2005) BMC Genomics , vol.6 , pp. 42-65
    • Fox, R.M.1
  • 11
    • 0037302837 scopus 로고    scopus 로고
    • Bridging the gap between genes and behavior: Recent advances in the electrophysiological analysis of neural function in Caenorhabditis elegans
    • Francis,M.M. et al. (2003) Bridging the gap between genes and behavior: recent advances in the electrophysiological analysis of neural function in Caenorhabditis elegans. Trends Neurosci., 26, 90-99.
    • (2003) Trends Neurosci. , vol.26 , pp. 90-99
    • Francis, M.M.1
  • 12
    • 0027263732 scopus 로고
    • How independent are the messages carried by adjacent inferior temporal conrical neurons?
    • Gawne,T. and Richmond,B. (1993) How independent are the messages carried by adjacent inferior temporal conrical neurons? J. Neurosci., 13, 2758-2771.
    • (1993) J. Neurosci. , vol.13 , pp. 2758-2771
    • Gawne, T.1    Richmond, B.2
  • 13
    • 0027521915 scopus 로고
    • The C. elegans unc-18 gene encodes a protein expressed in motor neurons
    • Gengyo-Ando,K. et al. (1993) The C. elegans unc-18 gene encodes a protein expressed in motor neurons. Neuron, 11, 703-711.
    • (1993) Neuron , vol.11 , pp. 703-711
    • Gengyo-Ando, K.1
  • 14
    • 0025332245 scopus 로고
    • The unc-5, unc-6, and unc-40 genes guide circumferential migrations of pioneer axons and mesodermal cells on the epidermis in C. elegans
    • Hedgecock,E.M. et al. (1990) The unc-5, unc-6, and unc-40 genes guide circumferential migrations of pioneer axons and mesodermal cells on the epidermis in C. elegans. Neuron, 2, 61-85.
    • (1990) Neuron , vol.2 , pp. 61-85
    • Hedgecock, E.M.1
  • 15
    • 20144370710 scopus 로고    scopus 로고
    • Electrical synapses define networks of neocortical GABAergic neurons
    • Hestrin,S. and Galarreta,M. (2005) Electrical synapses define networks of neocortical GABAergic neurons. Trends Neurosci., 28, 304-309.
    • (2005) Trends Neurosci. , vol.28 , pp. 304-309
    • Hestrin, S.1    Galarreta, M.2
  • 16
    • 0026481173 scopus 로고
    • UNC-6, a laminin-related protein, guides cell and pioneer axon migrations in C. elegans
    • Ishii,N. et al. (1992) UNC-6, a laminin-related protein, guides cell and pioneer axon migrations in C. elegans. Neuron, 9, 873-881.
    • (1992) Neuron , vol.9 , pp. 873-881
    • Ishii, N.1
  • 18
    • 33747872770 scopus 로고    scopus 로고
    • A genetic screen for genes affecting synaptogenesis using SYD-2:GFP active zone marker
    • Kawano,T. et al. (2005) A genetic screen for genes affecting synaptogenesis using SYD-2:GFP active zone marker. International Worm Meeting, 706C.
    • (2005) International Worm Meeting
    • Kawano, T.1
  • 19
    • 0028061313 scopus 로고
    • Netrins are diffusible chemotropic factors for commissural axons in the embryonic spinal cord
    • Kennedy,T.E. et al. (1994) Netrins are diffusible chemotropic factors for commissural axons in the embryonic spinal cord. Cell, 78, 425-435.
    • (1994) Cell , vol.78 , pp. 425-435
    • Kennedy, T.E.1
  • 20
    • 26444479778 scopus 로고
    • Optimization by Simulated Annealing
    • Kirkpatrick,S. et al. (1983) Optimization by Simulated Annealing. Science, 220, 671-680.
    • (1983) Science , vol.220 , pp. 671-680
    • Kirkpatrick, S.1
  • 22
    • 24044552183 scopus 로고    scopus 로고
    • Identification of ciliated sensory neuron-expressed genes in Caenorhabditis elegans using targeted pull-down of poly(A) tails
    • Kunitomo,H. et al. (2005) Identification of ciliated sensory neuron-expressed genes in Caenorhabditis elegans using targeted pull-down of poly(A) tails. Genome Biol., 6, R17.1-R17.13.
    • (2005) Genome Biol. , vol.6
    • Kunitomo, H.1
  • 25
    • 0029124995 scopus 로고
    • Expression of the unc-4 homeoprotein in Caenorhabditis elegans motor neurons specifies presynaptic input
    • Miller,D.M.,III and Niemeyer,C.J. (1995) Expression of the unc-4 homeoprotein in Caenorhabditis elegans motor neurons specifies presynaptic input. Development, 121, 2877-2886.
    • (1995) Development , vol.121 , pp. 2877-2886
    • Miller III, D.M.1    Niemeyer, C.J.2
  • 26
    • 0026571429 scopus 로고
    • C. elegans unc-4 gene encodes a homeodomain protein that determines the pattern of synaptic input to specific motor neurons
    • Miller,D.M.,III et al. (1992) C. elegans unc-4 gene encodes a homeodomain protein that determines the pattern of synaptic input to specific motor neurons. Nature, 355, 841-845.
    • (1992) Nature , vol.355 , pp. 841-845
    • Miller III, D.M.1
  • 27
    • 0030220346 scopus 로고    scopus 로고
    • Genetic analysis of Netrin genes in Drosophila: Netrins guide CNS commissural axons and peripheral motor axons
    • Mitchell,K.J. et al. (1996) Genetic analysis of Netrin genes in Drosophila: Netrins guide CNS commissural axons and peripheral motor axons. Neuron, 17, 203-215.
    • (1996) Neuron , vol.17 , pp. 203-215
    • Mitchell, K.J.1
  • 28
    • 0032769032 scopus 로고    scopus 로고
    • Visualization of synaptic specializations in live C. elegans with synaptic vesicle protein-GFP fusions
    • Nonet,M.L. (1999) Visualization of synaptic specializations in live C. elegans with synaptic vesicle protein-GFP fusions. J. Neurosci. Methods, 89, 33-40.
    • (1999) J. Neurosci. Methods , vol.89 , pp. 33-40
    • Nonet, M.L.1
  • 29
    • 16644397827 scopus 로고    scopus 로고
    • The MEC-4 DEG/ENaC channel of Caenorhabditis elegans touch receptor neurons transduces mechanical signals
    • O'Hagan,R et al. (2005) The MEC-4 DEG/ENaC channel of Caenorhabditis elegans touch receptor neurons transduces mechanical signals. Nat. Neurosci., 8, 43-50.
    • (2005) Nat. Neurosci. , vol.8 , pp. 43-50
    • O'Hagan, R.1
  • 30
    • 0036801359 scopus 로고    scopus 로고
    • The synaptic vesicle cycle: Exocytosis and endocytosis in Drosophila and C. elegans
    • Richmond,J.E. and Broadie,K.S. (2002) The synaptic vesicle cycle: exocytosis and endocytosis in Drosophila and C. elegans. Curr. Opin. Neurobiol., 12, 499-507.
    • (2002) Curr. Opin. Neurobiol. , vol.12 , pp. 499-507
    • Richmond, J.E.1    Broadie, K.S.2
  • 31
    • 0347064157 scopus 로고    scopus 로고
    • Synergy, Redundancy, and Independence in Population Codes
    • Schneidman,E. et al. (2003) Synergy, Redundancy, and Independence in Population Codes. J. Neurosci., 23, 11539-11553.
    • (2003) J. Neurosci. , vol.23 , pp. 11539-11553
    • Schneidman, E.1
  • 32
    • 0030582772 scopus 로고    scopus 로고
    • Netrin-1 is required for commissural axon guidance in the developing vertebrate nervous system
    • Serafini,T. et al. (1996) Netrin-1 is required for commissural axon guidance in the developing vertebrate nervous system. Cell, 87, 1001-1014.
    • (1996) Cell , vol.87 , pp. 1001-1014
    • Serafini, T.1
  • 33
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • 379-423 and
    • Shannon,C.E. (1948) A mathematical theory of communication. Bell Sys Tech. J., 27, 379-423, and 623-656.
    • (1948) Bell Sys Tech. J. , vol.27 , pp. 623-656
    • Shannon, C.E.1
  • 34
    • 1342264170 scopus 로고    scopus 로고
    • Molecular mechanisms of target specificity during synapse formation
    • Shen,K. (2004) Molecular mechanisms of target specificity during synapse formation. Curr. Opin. Neurobiol., 14, 83-88.
    • (2004) Curr. Opin. Neurobiol. , vol.14 , pp. 83-88
    • Shen, K.1
  • 35
    • 1642634997 scopus 로고    scopus 로고
    • Synaptic specificity is generated by the synaptic guidepost protein SYG-2 and its receptor, SYG-1
    • Shen,K. et al. (2004) Synaptic specificity is generated by the synaptic guidepost protein SYG-2 and its receptor, SYG-1. Cell, 116, 869-881.
    • (2004) Cell , vol.116 , pp. 869-881
    • Shen, K.1
  • 36
    • 78651127719 scopus 로고
    • Chemoaffinity in the orderly growth of nerve fiber patterns and connections
    • Sperry,R.W. (1963) Chemoaffinity in the orderly growth of nerve fiber patterns and connections. Proc. Natl. Acad. Sci. USA, 50, 703-709.
    • (1963) Proc. Natl. Acad. Sci. USA , vol.50 , pp. 703-709
    • Sperry, R.W.1
  • 37
    • 0031032833 scopus 로고    scopus 로고
    • unc-8, a DEG/ENaC family member, encodes a subunit of a candidate mechanically gated channel that modulates C. elegans locomotion
    • Tavernarakis,N. et al. (1997) unc-8, a DEG/ENaC family member, encodes a subunit of a candidate mechanically gated channel that modulates C. elegans locomotion. Neuron, 18, 107-119.
    • (1997) Neuron , vol.18 , pp. 107-119
    • Tavernarakis, N.1
  • 38
    • 33745628785 scopus 로고    scopus 로고
    • Inference of Disease-Related Molecular Logic from Systems-Based Microarray Analysis
    • in press
    • Varadan,V. and Anastassiou,D. (2006) Inference of Disease-Related Molecular Logic from Systems-Based Microarray Analysis. PLoS Comput. Biol., in press.
    • (2006) PLoS Comput. Biol.
    • Varadan, V.1    Anastassiou, D.2
  • 39
    • 0030062518 scopus 로고
    • Neuroglia and pioneer axons express UNC-6 to provide global and local netrin cues for guiding migrations in Caenorhabditis elegans
    • Wadsworth,W.G. et al. (1995) Neuroglia and pioneer axons express UNC-6 to provide global and local netrin cues for guiding migrations in Caenorhabditis elegans. Neuron, 16, 35-46.
    • (1995) Neuron , vol.16 , pp. 35-46
    • Wadsworth, W.G.1
  • 41
    • 0026501944 scopus 로고
    • Mutations in the Caenorhabditis elegans unc-4 gene alter the synaptic input to ventral cord motor neurons
    • White,J.G. et al. (1992) Mutations in the Caenorhabditis elegans unc-4 gene alter the synaptic input to ventral cord motor neurons. Nature, 355, 838-841.
    • (1992) Nature , vol.355 , pp. 838-841
    • White, J.G.1
  • 42
    • 0002221492 scopus 로고
    • The structure of the nervous system of the nematode Caenorhabditis elegans
    • White,J.G. et al. (1986) The structure of the nervous system of the nematode Caenorhabditis elegans. Philos. Trans. R. Soc. Lond., B, Biol. Sci., 314, 1-340.
    • (1986) Philos. Trans. R. Soc. Lond., B, Biol. Sci. , vol.314 , pp. 1-340
    • White, J.G.1
  • 43
    • 0032728062 scopus 로고    scopus 로고
    • UNC-4/UNC-37-dependent repression of motor neuronspecific genes controls synaptic choice in Caenorhabditis elegans
    • Winnier,A.R. et al. (1999) UNC-4/UNC-37-dependent repression of motor neuronspecific genes controls synaptic choice in Caenorhabditis elegans. Genes Dev., 13, 2774-2786.
    • (1999) Genes Dev. , vol.13 , pp. 2774-2786
    • Winnier, A.R.1
  • 44
    • 4444318773 scopus 로고    scopus 로고
    • Alternative splicing of Drosophila Dscam generates axon guidance receptors that exhibit isoform-specific homophilic binding
    • Wojtowicz,W.M. et al. (2004) Alternative splicing of Drosophila Dscam generates axon guidance receptors that exhibit isoform-specific homophilic binding. Cell, 118, 619-633.
    • (2004) Cell , vol.118 , pp. 619-633
    • Wojtowicz, W.M.1
  • 45
    • 33747889190 scopus 로고    scopus 로고
    • Wormbase website. WS155
    • Wormbase website. (2006) http://www.wormbase.org, WS155.
    • (2006)
  • 46
    • 17744391752 scopus 로고    scopus 로고
    • Comparative DNA sequence analysis of mouse and human protocadherin gene clusters
    • Wu,Q. et al. (2001) Comparative DNA sequence analysis of mouse and human protocadherin gene clusters. Genome Res., 11, 389-404.
    • (2001) Genome Res. , vol.11 , pp. 389-404
    • Wu, Q.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.