Evaluation of RNA-binding specificity of aminoglycosides with DNA microarrays

Proceedings of the National Academy of Sciences of the United States of America

Volumn 103, Issue 33, 2006, Pages 12311-12316

  Liang, Fu Sen ^a   Greenberg, William A ^a   Hammond, Jennifer A ^a   Hoffmann, Julia ^a   Head, Steven R ^a   Wong, Chi Huey ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

Aminoglycoside RNA interactions

Indexed keywords

AMINOGLYCOSIDE ANTIBIOTIC AGENT; TOBRAMYCIN; TRANSCRIPTOME;

ANISOTROPY; ARTICLE; BACTERICIDAL ACTIVITY; BINDING AFFINITY; COVALENT BOND; DNA MICROARRAY; GENE AMPLIFICATION; HYBRIDIZATION; LIGAND BINDING; MOLECULAR INTERACTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REACTION ANALYSIS; RNA BINDING; TISSUE SPECIFICITY;

ANIMALS; ANTI-BACTERIAL AGENTS; HUMANS; LIGANDS; LIVER; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; RNA; TOBRAMYCIN;

EID: 33747615039     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0605264103     Document Type: Article

References (27)

1. Kotra, L. P., Haddad, J. & Mobashery, S. (2000) Antimicrob. Agents Chemother. 44, 3249-3256.
2. Ogle, J. M., Brodersen, D. E., Clemons, W. M., Tarry, M. J., Carter, A. P. & Ramakrishnan, V. (2001) Science 292, 897-902.
3. Ogle, J. M., Carter, A. P. & Ramakrishnan, V. (2003) Trends Biochem. Sci. 28, 259-266.
4. Ogle, J. M., Murphy, F. V., Tarry, M. J., Carter, A. P. & Ramakrishnan, V. (2002) Cell 111, 721-732.
5. Davis, B. D. (1987) Microbiol. Rev. 51, 341-350.
6. Perzynski, S., Cannon, M., Cundliffe, E., Chahwala, S. B. & Davies, J. (1979) Eur. J. Biochem. 99, 623-628.
7. Brink, M. F., Brink, G., Verbeet, M. P. & De Boer, H. A. (1994) Nucleic Acids Res. 22, 325-331.
8. Tor, Y. (2003) ChemBioChem. 4, 998-1007.
9. Hermann, T. (2000) Angew. Chem. Int. Ed. 39, 1891-1905.
10. Wong, C.-H., Hendrix, M., Priestley, E. S. & Greenberg, W. A. (1998) Chem. Biol. 5, 397-406.
11. Alper, P. B., Hendrix, M., Sears, P. & Wong, C.-H. (1998) J. Am. Chem. Soc. 120, 1965-1978.
12. Verhelst, S. H. L., Michiels, P. J. A., van der Marel, G. A., Van Boeckel, C. A. A. & van Boom, J. H. (2004) ChemBioChem 5, 937-942.
13. Liang, F.-S., Wang, S.-K., Nakatani, T. & Wong, C.-H. (2004) Angew. Chem. Int. Ed. 43, 6496-6500.
14. Wang, Y., Hamasaki, K. & Rando, R. R. (1997) Biochemistry 36, 768-779.
15. Gershon, D. (2004) Nat. Methods 1, 263-270.
16. Mantripragada, K. K., Buckley, P. G., de Ståhl, T. D. & Dumanski, J. P. (2004) Trends Genet. 20, 87-94.
17. Venkatasubbarao, S. (2004) Trends Biotechnol. 22, 630-637.
18. Blohm, D. H. & Guiseppi-Elie, A. (2001) Curr. Opin. Biotechnol. 12, 41-47.
19. Bryan, M. C. & Wong, C.-H. (2004) Tetrahedron Lett. 45, 3639-3642.
20. Vicens, Q. & Westhof, E. (2002) Chem. Biol. 6, 747-755.
21. Michael, K., Wang, H. & Tor, Y. (1999) Bioorg. Med. Chem. 7, 1361-1371.
22. Kirk, S. R., Luedtke, N. W. & Tor, Y. (2000) J. Am. Chem. Soc. 122, 980-981.
23. Wang, H. & Tor, Y. (1998) Bioorg. Med. Chem. Lett. 8, 3665-3670.
24. Wu, C.-Y., Chang, C.-F., Chen, J. S.-Y., Wong, C.-H. & Lin, C.-H. (2003) Angew. Chem. Int. Ed. 42, 4661-4664.
25. Liang, F.-S. & Wong, C.-H. (2003) Methods Enzymol. 362, 340-353.
26. Wang, Q. T., Xiao, W., Mindrinos, M. & Davis, R. W. (2002) BioTechniques 33, 788-796.
27. Fridman, M., Belakhov, V., Lee, L. V., Liang, F.-S., Wong, C.-H. & Baasov, T. (2005) Angew. Chem. Int. Ed. 44, 447-452.