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Volumn 242, Issue 2, 2006, Pages 372-381

The adaptive filter of the yeast galactose pathway

Author keywords

Adaptive filter; Feedback loop; Galactose switch; Interaction networks; Qualitative modeling; Yeast

Indexed keywords

CELL RECEPTOR; GALACTOSE; PROTEIN;

EID: 33747385760     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2006.03.005     Document Type: Article
Times cited : (10)

References (36)
  • 1
    • 0032446353 scopus 로고    scopus 로고
    • Differential regulation of transcription: repression by unactivated mitogen-activated protein kinase Kss1 requires the Dig1 and Dig2 proteins
    • Bardwell L., Cook J.G., Zhu-Shimoni J.X., Voora D., and Thorner J. Differential regulation of transcription: repression by unactivated mitogen-activated protein kinase Kss1 requires the Dig1 and Dig2 proteins. Proc. Natl Acad. Sci. USA 95 26 (1998) 15400-15405
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , Issue.26 , pp. 15400-15405
    • Bardwell, L.1    Cook, J.G.2    Zhu-Shimoni, J.X.3    Voora, D.4    Thorner, J.5
  • 2
    • 2342578714 scopus 로고    scopus 로고
    • Spatiotemporal control of gene expression with pulse-generating networks
    • Basu S., Mehreja R., Thiberge S., Chen M.T., and Weiss R. Spatiotemporal control of gene expression with pulse-generating networks. Proc. Natl Acad. Sci. USA 101 17 (2004) 6355-6360
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , Issue.17 , pp. 6355-6360
    • Basu, S.1    Mehreja, R.2    Thiberge, S.3    Chen, M.T.4    Weiss, R.5
  • 3
    • 0026651864 scopus 로고
    • Overproduction of the GAL1 or GAL3 protein causes galactose-independent activation of the GAL4 protein: evidence for a new model of induction for the yeast GAL/MEL regulon
    • Bhat P.J., and Hopper J.E. Overproduction of the GAL1 or GAL3 protein causes galactose-independent activation of the GAL4 protein: evidence for a new model of induction for the yeast GAL/MEL regulon. Mol. Cell. Biol. 12 6 (1992) 2701-2707
    • (1992) Mol. Cell. Biol. , vol.12 , Issue.6 , pp. 2701-2707
    • Bhat, P.J.1    Hopper, J.E.2
  • 4
    • 0034967623 scopus 로고    scopus 로고
    • Transcriptional control of the GAL/MEL regulon of yeast Saccharomyces cerevisiae: mechanism of galactose-mediated signal transduction
    • Bhat P.J., and Murthy T.V. Transcriptional control of the GAL/MEL regulon of yeast Saccharomyces cerevisiae: mechanism of galactose-mediated signal transduction. Mol. Microbiol. 40 5 (2001) 1059-1066
    • (2001) Mol. Microbiol. , vol.40 , Issue.5 , pp. 1059-1066
    • Bhat, P.J.1    Murthy, T.V.2
  • 5
    • 0035423749 scopus 로고    scopus 로고
    • SAGA is an essential in vivo target of the yeast acidic activator Gal4p
    • Bhaumik S.R., and Green M.R. SAGA is an essential in vivo target of the yeast acidic activator Gal4p. Genes Dev. 15 15 (2001) 1935-1945
    • (2001) Genes Dev. , vol.15 , Issue.15 , pp. 1935-1945
    • Bhaumik, S.R.1    Green, M.R.2
  • 6
    • 0035875668 scopus 로고    scopus 로고
    • Cell signaling can direct either binary or graded transcriptional responses
    • Biggar S.R., and Crabtree G.R. Cell signaling can direct either binary or graded transcriptional responses. EMBO J. 20 12 (2001) 3167-3176
    • (2001) EMBO J. , vol.20 , Issue.12 , pp. 3167-3176
    • Biggar, S.R.1    Crabtree, G.R.2
  • 7
    • 0036207347 scopus 로고    scopus 로고
    • Modeling and simulation of genetic regulatory systems: a literature review
    • de Jong H. Modeling and simulation of genetic regulatory systems: a literature review. J. Comput. Biol. 9 1 (2002) 67-103
    • (2002) J. Comput. Biol. , vol.9 , Issue.1 , pp. 67-103
    • de Jong, H.1
  • 8
    • 0033000483 scopus 로고    scopus 로고
    • GAL4 is regulated by the RNA polymerase II holoenzyme-associated cyclin-dependent protein kinase SRB10/CDK8
    • Hirst M., Kobor M.S., Kuriakose N., Greenblatt J., and Sadowski I. GAL4 is regulated by the RNA polymerase II holoenzyme-associated cyclin-dependent protein kinase SRB10/CDK8. Mol. Cell. 3 5 (1999) 673-678
    • (1999) Mol. Cell. , vol.3 , Issue.5 , pp. 673-678
    • Hirst, M.1    Kobor, M.S.2    Kuriakose, N.3    Greenblatt, J.4    Sadowski, I.5
  • 10
    • 0028230982 scopus 로고
    • Multiple mechanisms provide rapid and stringent glucose repression of GAL gene expression in Saccharomyces cerevisiae
    • Johnston M., Flick J.S., and Pexton T. Multiple mechanisms provide rapid and stringent glucose repression of GAL gene expression in Saccharomyces cerevisiae. Mol. Cell. Biol. 14 6 (1994) 3834-3841
    • (1994) Mol. Cell. Biol. , vol.14 , Issue.6 , pp. 3834-3841
    • Johnston, M.1    Flick, J.S.2    Pexton, T.3
  • 11
    • 0035425099 scopus 로고    scopus 로고
    • The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4
    • Larschan E., and Winston F. The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4. Genes. Dev. 15 15 (2001) 1946-1956
    • (2001) Genes. Dev. , vol.15 , Issue.15 , pp. 1946-1956
    • Larschan, E.1    Winston, F.2
  • 12
    • 0034625005 scopus 로고    scopus 로고
    • Cell signaling pathways as control modules: Complexity for simplicity?
    • Lauffenburger D.A. Cell signaling pathways as control modules: Complexity for simplicity?. Proc. Natl Acad. Sci. USA 97 10 (2000) 5031-5033
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , Issue.10 , pp. 5031-5033
    • Lauffenburger, D.A.1
  • 14
    • 0026730183 scopus 로고
    • A transcriptionally active form of GAL4 is phosphorylated and associated with GAL80
    • Parthun M.R., and Jaehning J.A. A transcriptionally active form of GAL4 is phosphorylated and associated with GAL80. Mol. Cell. Biol. 12 11 (1992) 4981-4987
    • (1992) Mol. Cell. Biol. , vol.12 , Issue.11 , pp. 4981-4987
    • Parthun, M.R.1    Jaehning, J.A.2
  • 15
    • 0033625679 scopus 로고    scopus 로고
    • Evidence for Gal3p's cytoplasmic location and Gal80p's dual cytoplasmic-nuclear location implicates new mechanisms for controlling Gal4p activity in Saccharomyces cerevisiae
    • Peng G., and Hopper J.E. Evidence for Gal3p's cytoplasmic location and Gal80p's dual cytoplasmic-nuclear location implicates new mechanisms for controlling Gal4p activity in Saccharomyces cerevisiae. Mol. Cell. Biol. 20 14 (2000) 5140-5148
    • (2000) Mol. Cell. Biol. , vol.20 , Issue.14 , pp. 5140-5148
    • Peng, G.1    Hopper, J.E.2
  • 16
    • 0037173045 scopus 로고    scopus 로고
    • Gene activation by interaction of an inhibitor with a cytoplasmic signaling protein
    • Peng G., and Hopper J.E. Gene activation by interaction of an inhibitor with a cytoplasmic signaling protein. Proc. Natl Acad. Sci. USA 99 13 (2002) 8548-8553
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , Issue.13 , pp. 8548-8553
    • Peng, G.1    Hopper, J.E.2
  • 17
    • 0032527810 scopus 로고    scopus 로고
    • The yeast galactose genetic switch is mediated by the formation of a Gal4p-Gal80p-Gal3p complex
    • Platt A., and Reece R.J. The yeast galactose genetic switch is mediated by the formation of a Gal4p-Gal80p-Gal3p complex. EMBO J. 17 14 (1998) 4086-4091
    • (1998) EMBO J. , vol.17 , Issue.14 , pp. 4086-4091
    • Platt, A.1    Reece, R.J.2
  • 18
    • 0034724439 scopus 로고    scopus 로고
    • The insertion of two amino acids into a transcriptional inducer converts it into a galactokinase
    • Platt A., Ross H.C., Hankin S., and Reece R.J. The insertion of two amino acids into a transcriptional inducer converts it into a galactokinase. Proc. Natl Acad. Sci. USA 97 7 (2000) 3154-3159
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , Issue.7 , pp. 3154-3159
    • Platt, A.1    Ross, H.C.2    Hankin, S.3    Reece, R.J.4
  • 20
    • 0034025574 scopus 로고    scopus 로고
    • Multiple signals regulate GAL transcription in yeast
    • Rohde J.R., Trinh J., and Sadowski I. Multiple signals regulate GAL transcription in yeast. Mol. Cell. Biol. 20 11 (2000) 3880-3886
    • (2000) Mol. Cell. Biol. , vol.20 , Issue.11 , pp. 3880-3886
    • Rohde, J.R.1    Trinh, J.2    Sadowski, I.3
  • 21
    • 4944252431 scopus 로고    scopus 로고
    • Autoregulation of regulatory proteins is key for dynamic operation of GAL switch in Saccharomyces cerevisiae
    • Ruhela A., Verma M., Edwards J.S., Bhat P.J., Bhartiya S., and Venkatesh K.V. Autoregulation of regulatory proteins is key for dynamic operation of GAL switch in Saccharomyces cerevisiae. FEBS Lett. 576 1-2 (2004) 119-126
    • (2004) FEBS Lett. , vol.576 , Issue.1-2 , pp. 119-126
    • Ruhela, A.1    Verma, M.2    Edwards, J.S.3    Bhat, P.J.4    Bhartiya, S.5    Venkatesh, K.V.6
  • 22
    • 0025790341 scopus 로고
    • GAL4 is phosphorylated as a consequence of transcriptional activation
    • Sadowski I., Niedbala D., Wood K., and Ptashne M. GAL4 is phosphorylated as a consequence of transcriptional activation. Proc. Natl Acad. Sci. USA 88 23 (1991) 10510-10514
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , Issue.23 , pp. 10510-10514
    • Sadowski, I.1    Niedbala, D.2    Wood, K.3    Ptashne, M.4
  • 23
    • 0029664802 scopus 로고    scopus 로고
    • Phosphorylation of Ga14p at a single C-terminal residue is necessary for galactose-inducible transcription
    • Sadowski I., Costa C., and Dhanawansa R. Phosphorylation of Ga14p at a single C-terminal residue is necessary for galactose-inducible transcription. Mol. Cell. Biol. 16 9 (1996) 4879-4887
    • (1996) Mol. Cell. Biol. , vol.16 , Issue.9 , pp. 4879-4887
    • Sadowski, I.1    Costa, C.2    Dhanawansa, R.3
  • 24
    • 0028025650 scopus 로고
    • Two alternative pathways of transcription initiation in the yeast negative regulatory gene GAL80
    • Sakurai H., Ohishi T., and Fukasawa T. Two alternative pathways of transcription initiation in the yeast negative regulatory gene GAL80. Mol. Cell. Biol. 14 10 (1994) 6819-6828
    • (1994) Mol. Cell. Biol. , vol.14 , Issue.10 , pp. 6819-6828
    • Sakurai, H.1    Ohishi, T.2    Fukasawa, T.3
  • 25
    • 0036578795 scopus 로고    scopus 로고
    • Network motifs in the transcriptional regulation network of Escherichia coli
    • Shen-Orr S.S., Milo R., Mangan S., and Alon U. Network motifs in the transcriptional regulation network of Escherichia coli. Nat. Genet. 31 1 (2002) 64-68
    • (2002) Nat. Genet. , vol.31 , Issue.1 , pp. 64-68
    • Shen-Orr, S.S.1    Milo, R.2    Mangan, S.3    Alon, U.4
  • 26
    • 0000225069 scopus 로고    scopus 로고
    • The Gal3p-Gal80p-Gal4p transcription switch of yeast: Gal3p destabilizes the Gal80p-Gal4p complex in response to galactose and ATP
    • Sil A.K., Alam S., Xin P., Ma L., Morgan M., Lebo C.M., Woods M.P., and Hopper J.E. The Gal3p-Gal80p-Gal4p transcription switch of yeast: Gal3p destabilizes the Gal80p-Gal4p complex in response to galactose and ATP. Mol. Cell. Biol. 19 11 (1999) 7828-7840
    • (1999) Mol. Cell. Biol. , vol.19 , Issue.11 , pp. 7828-7840
    • Sil, A.K.1    Alam, S.2    Xin, P.3    Ma, L.4    Morgan, M.5    Lebo, C.M.6    Woods, M.P.7    Hopper, J.E.8
  • 27
    • 33747436309 scopus 로고    scopus 로고
    • Smidtas, S., Yartseva, A., Schächter, V., Képès, F., 2006. Model of interactions in Biological Networks, submitted for publication.
  • 28
    • 0035449932 scopus 로고    scopus 로고
    • Modeling Circadian Oscillations with Interlocking Positive and Negative Feedback Loops
    • Smolen P., Baxter D., and Byrne J. Modeling Circadian Oscillations with Interlocking Positive and Negative Feedback Loops. J. Neurosci. 21 (2001) 6644-6656
    • (2001) J. Neurosci. , vol.21 , pp. 6644-6656
    • Smolen, P.1    Baxter, D.2    Byrne, J.3
  • 29
    • 4444345315 scopus 로고    scopus 로고
    • A two variable delay model for the circadian rhythm of Neurospora crassa
    • Sriram K., and Gopinathan M.S. A two variable delay model for the circadian rhythm of Neurospora crassa. J. Theor. Biol. 231 (2004) 23-38
    • (2004) J. Theor. Biol. , vol.231 , pp. 23-38
    • Sriram, K.1    Gopinathan, M.S.2
  • 30
    • 0029963566 scopus 로고    scopus 로고
    • Analysis of the galactose signal transduction pathway in Saccharomyces cerevisiae: interaction between Gal3p and Gal80p
    • Suzuki-Fujimoto T., Fukuma M., Yano K.I., Sakurai H., Vonika A., Johnston S.A., and Fukasawa T. Analysis of the galactose signal transduction pathway in Saccharomyces cerevisiae: interaction between Gal3p and Gal80p. Mol. Cell. Biol. 16 5 (1996) 2504-2508
    • (1996) Mol. Cell. Biol. , vol.16 , Issue.5 , pp. 2504-2508
    • Suzuki-Fujimoto, T.1    Fukuma, M.2    Yano, K.I.3    Sakurai, H.4    Vonika, A.5    Johnston, S.A.6    Fukasawa, T.7
  • 31
    • 1542676783 scopus 로고    scopus 로고
    • Quantitative analysis of GAL genetic switch of Saccharomyces cerevisiae reveals that nucleocytoplasmic shuttling of Gal80p results in a highly sensitive response to galactose
    • Verma M., Bhat P.J., Kumar R.A., and Doshi P. Quantitative analysis of GAL genetic switch of Saccharomyces cerevisiae reveals that nucleocytoplasmic shuttling of Gal80p results in a highly sensitive response to galactose. J. Biol. Chem. 278 49 (2003) 48764-48769
    • (2003) J. Biol. Chem. , vol.278 , Issue.49 , pp. 48764-48769
    • Verma, M.1    Bhat, P.J.2    Kumar, R.A.3    Doshi, P.4
  • 32
    • 0000575099 scopus 로고
    • Inheritance of enzymatic characters in yeast and the phenomenon of long term adaptation
    • Winge O., and Roberts C. Inheritance of enzymatic characters in yeast and the phenomenon of long term adaptation. CR Trav. Laboratoire Carlsberg Series Physiol. 24 (1948) 263-315
    • (1948) CR Trav. Laboratoire Carlsberg Series Physiol. , vol.24 , pp. 263-315
    • Winge, O.1    Roberts, C.2
  • 33
    • 0030947344 scopus 로고    scopus 로고
    • Molecular evidence for an ancient duplication of the entire yeast genome
    • Wolfe K.H., and Shields D.C. Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387 6634 (1997) 708-713
    • (1997) Nature , vol.387 , Issue.6634 , pp. 708-713
    • Wolfe, K.H.1    Shields, D.C.2
  • 34
    • 0031042946 scopus 로고    scopus 로고
    • Galactose-dependent reversible interaction of Gal3p with Gal80p in the induction pathway of Gal4p-activated genes of Saccharomyces cerevisiae
    • Yano K., and Fukasawa T. Galactose-dependent reversible interaction of Gal3p with Gal80p in the induction pathway of Gal4p-activated genes of Saccharomyces cerevisiae. Proc. Natl Acad. Sci. USA 94 5 (1997) 1721-1726
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , Issue.5 , pp. 1721-1726
    • Yano, K.1    Fukasawa, T.2
  • 35
    • 0344011136 scopus 로고    scopus 로고
    • Detection of regulatory circuits by integrating the cellular networks of protein-protein interactions and transcription regulation
    • Yeger-Lotem E., and Margalit H. Detection of regulatory circuits by integrating the cellular networks of protein-protein interactions and transcription regulation. Nucleic Acids Res. 31 20 (2003) 6053-6061
    • (2003) Nucleic Acids Res. , vol.31 , Issue.20 , pp. 6053-6061
    • Yeger-Lotem, E.1    Margalit, H.2


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