Virus-bacterium interactions in water and sediment of West African inland aquatic systems

Applied and Environmental Microbiology

Volumn 72, Issue 8, 2006, Pages 5274-5282

  Bettarel, Yvan ^a,d   Bouvy, Marc ^b   Dumont, Claire ^c   Sime Ngando, Télesphore ^c  

^a Centre IRD de Bel Air   (Senegal)

^b UNIV MONTPELLIER   (France)

^c UNIVERSITÉ CLERMONT AUVERGNE   (France)

^d INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (Senegal)

Author keywords

[No Author keywords available]

Indexed keywords

ECOSYSTEMS; LAKES; MARINE BIOLOGY; OCEAN HABITATS; SEDIMENTS; TROPICS;

BENTHIC HABITATS; INFECTED CELLS; INLAND AQUATIC SYSTEMS;

WATER BACTERIOLOGY;

GOLD; WATER;

BACTERIUM; BENTHIC ENVIRONMENT; HOST-PARASITE INTERACTION; LACUSTRINE DEPOSIT; LAKE WATER; PELAGIC ENVIRONMENT; SALINE LAKE; VIRUS;

AFRICA; AQUATIC ENVIRONMENT; ARTICLE; BACTERIAL INFECTION; BENTHOS; CLIMATE; CONTROLLED STUDY; ECOLOGY; FRESHWATER ENVIRONMENT; LYSOGENIZATION; MARINE ENVIRONMENT; NONHUMAN; ORGANISMAL INTERACTION; PELAGIC ZONE; PLANKTON; SEDIMENT; STAINING; TRANSMISSION ELECTRON MICROSCOPY; TROPICS; VIRUS BACTERIUM INTERACTION;

BACTERIA; BACTERIOPHAGES; ECOSYSTEM; FRESH WATER; GEOLOGIC SEDIMENTS; LYSOGENY; MICROSCOPY, ELECTRON, TRANSMISSION; SENEGAL;

AFRICA; SENEGAL; SUB-SAHARAN AFRICA; WEST AFRICA;

BACTERIA (MICROORGANISMS);

EID: 33747370386     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.00863-06     Document Type: Article

References (72)

1. Alonso, M., F. Jimenez-Gomez, J. Rodriguez, and J. Borrego. 2001. Distribution of virus-like particles in an oligotrophic marine environment (Alborean Sea, western Mediterranean). Microb. Ecol. 42:407-415.
2. Arfi, R., M. Bouvy, P. Cecchi, D. Corbin, and M. Pagano. 2003. Environmental conditions and phytoplankton assemblages in two shallow reservoirs of Ivory Coast (West Africa). Arch. Hydrobiol. 156:511-534.
3. Auguet, J.-C., H. Montante, and P. Lebaron. 2006. Structure of virioplankton in the Charente Estuary (France): transmission electron microscopy versus pulsed field gel clectrophoresis. Microb. Ecol. 51:197-208.
4. Bell, R. T. 1993. Estimating production of heterotrophic bacterioplankton via incorporation of tritiated thymidine, p. 495-503. In P. F. Kemp, B. F. Sherr, E. B. Sherr, and J. J. Cole (ed.), Handhook of methods in aquatic microbial ecology. Lewis Publishers, Boca Raton, Fla.
5. Bergh, Ø, K. Y. Børsheim, G. Bratbak, and M. Heldal. 1989. High abundance of viruses found in aquatic environments. Nature 340:467-468.
6. Bettarel, Y., T. Sime-Ngando, C. Amblard, and H. Laveran. 2000. A comparison of methods for counting viruses in aquatic systems. Appl. Environ. Microbiol. 66:2283-2289.
7. Bettarel, Y., J. R. Dolan, K. Hornak, R. Lemee, M. Masin, M.-L. Pedrotti, E. Rochell-Newell, K. Simek, and T. Sime-Ngando. 2002. Strong, weak, and missing links in a microbial community of the N.W. Mediterranean Sea. FEMS Microbiol. Ecol. 42:451-462.
8. Bettarel, Y., C. Amblard, T. Slme-Ngando, J.-F. Carrias, D. Sargos, F. Garabetian, and P. Lavandier. 2003. Viral lysis versus flagellate grazing as factors regulating bacterial abundance in a oligomesotrophic lake: a short-term study. Microb. Ecol. 45:119-127.
9. Bettarel, Y., T. Sime-Ngando, C. Amblard, and J. Dolan. 2004. Viral activity in two contrasting lake ecosystems. Appl. Environ. Microbiol. 70:2941-2951.
10. Bettarel, Y., T. Sime-Ngando, M. Bouvy, R. Arfi, and C. Amblard. 2005. Low consumption of virus-sized particles by heterotrophic nanoflagellates in two lakes of the French Massif Central. Aquat. Microb. Ecol. 39:205-209.
11. Binder, B. 1999. Reconsidering the relationship between virally induced bacterial mortality and frequency of infected cells. Aquat. Microb. Ecol. 18:207-215.
12. Bouvy, M., R. Arfi, P. Cecchi, D. Corbin, M. Pagano, L. Saint-Jean, and S. Thomas. 1998. Trophic coupling between bacterial and phytoplanktonic compartments in shallow tropical reservoirs (Ivory Coast, West Africa). Aquat. Microb. Ecol. 15:25-37.
13. Bouvy, M., M. Troussellier, P. Got, and R. Arfi. 2004. Bacterioplankton responses to bottom-up and top-down controls in a West African reservoir (Selingue, Mali). Aquat. Microb. Ecol. 34:301-307.
14. Breitbart, M., and F. Rohwer. 2005. Here a virus, there a virus, everywhere the same virus? Trends Microbiol. 13:278-284.
15. Brum, J. R., G. F. Steward, S. C. Jiang, and R. Jellison. 2005. Spatial and temporal variability of prokaryotes, viruses, and viral infections of prokaryotes in an alkaline, hypersaline lake. Aquat. Microb. Ecol. 41:261-270.
16. Carlson, R. E. 1977. A trophic state index for lakes. Limnol. Oceanogr. 22:361-369.
17. Chen, F., J.-R. Lu, B. Binder, B., Y.-C. Liu, and R. E. Hodson. 2001. Application of digital image analysis and How cytometry to enumerate marine viruses stained with SYBR Gold. Appl. Environ. Microbiol. 67:539-545.
18. Cochlan, W. P., J. Wikner, G. F. Steward, D. C. Smith, and F. Azam. 1993. Spatial distribution of viruses, bacteria and chlorophyll a in neritic, oceanic and estuarine environments. Mar. Ecol. Prog. Ser. 92:77-87.
19. Danovaro, R., A. Dell'anno, A. Trucco, M. Serresi, and S. Vanucci. 2001. Determination of virus abundance in marine sediments. Appl. Environ. Microbiol. 67:1384-1387.
20. Danovaro, R., C. Corinaldesi, A., Dell'Anno, M., Fabiano, and C. Corselli. 2005. Viruses, prokaryotes and DNA in the sediments of a deep-hypersaline anoxic basin (DHAB) of the Mediterranean Sea. Environ. Microbiol. 7:586-592.
21. Filippini, M., N. Buesing, Y. Bettarel, T. Sime-Ngando, and M. Gessner. 2006. Infection paradox: high abundance but low impact of freshwater benthic viruses. Appl. Environ. Microbiol. 72:4893-4898.
22. Fischer, U. R., C. Wieltschnig, A. K. T. Kirschner, and B. Veiimirov. 2003. Does virus-induced lysis contribute significantly to bacterial mortality in the oxygenated sediment layer of shallow oxbow lakes? Appl. Environ. Microbiol. 69:5281-5289.
23. Fischer, U. R., W. Weisz, C. Wieltschnig, A. K. T. Kirschner, and B. Velimirov. 2004. Benthic and pelagic viral decay experiments: a model-based analysis and its applicability. Appl. Environ. Microbiol. 70:6706-6713.
24. Flood, J. A., and N. J. Ashbolt. 1999. Virus-sized particles can be entrapped and concentrated one hundred fold within wetland biofilms. Adv. Environ. Res. 3:1225-1228.
25. Fuhrman, J. A. 1999. Marine viruses and their biogeochemical and ecological effects. Nature 399:541-548.
26. Glud, R. N., and M. Middelbne. 2004. Virus and bacteria dynamics of a coastal sediment: implication for benthic carbon cycling. Limnol. Oceanogr. 49:2073-2081.
27. Gonzàlez, J. M., and C. A. Suttle. 1993. Grazing by marine nanoflagellates on viruses and virus-sized particles: ingestion and digestion. Mar. Ecol. Prog. Ser. 94:1-10.
28. Guixa-Boixareu, N., J. I. Calderon-Paz, M. Heldal, G. Bratbak, and C. Pedros-Alio. 1996. Viral lysis and bacterivory as prokaryotic loss factors along a salinity gradient. Aquat. Microb. Ecol. 11:215-227.
29. Guixa-Boixareu, N., D. Vaqué, J. M. Gasol, J. Sanchez-Camara, and C. Pedros-Alio. 2002. Viral distribution and activity in Antarctic waters. Deep- Sea Res. II 49:827-845.
30. Haglund, A.-L., P. Lantz, E. Törnblom, and L. Tranvik. 2003. Depth distribution of active bacteria and bacterial activity in lake sediment. FEMS Microbiol. Ecol. 46:31-38.
31. Hambly, E., and C. A. Suttle. 2005. The viriosphere, diversity, and genetic exchange within phage communities. Curr. Opin. Microbiol. 8:444-450.
32. Hansen, J. W., B. Thampdrup, and B. B. Jorgensen. 2000. Anoxic incubation of sediment in gas-tight plastic bags: a method for biogeochemical process studies. Mar. Ecol. Prog. Ser. 208:273-282.
33. Hewson, I., J. M. O'Neil, J. A. Fuhrman, and W. C. Dennison. 2001. Virus-like particle distribution and abundance in sediments and overlaying waters along eutrophication gradients in two subtropical estuaries. Limnol. Oceanogr. 46:1734-1746.
34. Hewson, I., and J. A. Fuhrman. 2003. Viriobenthos production and virioplankton sorptive scavenging by suspended sediment particles in coastal and pelagic water. Microb. Ecol. 46:337-347.
35. Hofer, J. S., and R. Sommaruga. 2001. Seasonal dynamics of viruses in an alpine lake: importance of filamentous forms. Aquat. Microb. Ecol. 26:1-11.
36. Jacquet, S., I. Domaizon, S. Personnic, A. S. Pradeep Ram, M. Heldal, S. Duhamel, S., and T. Sime-Ngando. 2005. Estimates of protozoan- and viral-mediated mortality of bacterioplankton in Lake Bourget (France). Freshw. Biol. 50:627-645.
37. Reference deleted.
38. Kirschner, A. K. T., and B. Velimirov. 1999. Benthic bacterial secondary production measured via simultaneous 3H-thymidine and l4C-leucine incorporation, and its implication for the carbon cycle of a shallow macrophyte-dominated backwater system. Limnol. Oceanogr. 44:1871-1881.
39. Madan, N. J., W. A. Marshall, and J. Laybourn-Parry. 2005. Virus and microbial loop dynamics over an annual cycle in three contrasting Antarctic lakes. Freshw. Biol. 50:1291-1300.
40. Maranger, R., and D. F. Bird. 1996. High concentrations of viruses in the sediments of Lac Gilbert, Québec. Microb. Ecol. 31:141-151.
41. Maranger, R., P. A. Del Gorgio, and D. F. Bird. 2002. Accumulation of damaged bacteria and viruses in lake exposed to solar radiation. Aquat. Microb. Ecol. 28:213-227.
42. Mathieu, C., and F. Pieltain. 2003. Analyse chimique des sols. Tec/Doc, Cachan, France.
43. Mei, M. L., and R. Danovaro. 2004. Virus production and life strategies in aquatic sediments. Limnol. Oceanogr. 49:459-470.
44. Middelboe, M., R. N. Glud, and K. Finster. 2003. Distribution of viruses and bacteria in relation to diagenetic activity in an estuarine sediment. Limnol. Oceanogr. 48:1447-1456.
45. Oren, A., G. Bratbak, and M. Heldal. 1997. Occurrence of virus-like particles in the Dead Sea. Extremophiles 1:143-149.
46. Peduzzi, P., and F. Schiemer. 2004. Bacteria and viruses in the water column of tropical freshwater reservoirs. Environ. Microbiol. 6:707-715.
47. Porter, K. G., and Y. S. Feig. 1980. The use of DAPI for identification and enumeration of bacteria and and blue-green algae. Limnol. Oceanogr. 25: 943-9480.
48. Pradeep Ram, A. S., D. Boucher, T. Sime-Ngando, D. Debroas. and J.-C. Romagoux. 2005. Phage baeteriolysis, prostistan bacterivory potential, and bacterial production in a freshwater reservoir: coupling with temperature. Microb. Ecol. 50:64-72.
49. Proctor, L. M., and J. A. Fuhrman. 1990. Viral mortality of marine bacteria and cyanobacteria. Nature 343:60-62.
50. Robarts, R. D., and T. Zohary. 1993. Fact or fiction-bacterial growth rates and production as determined by (methyl-3H)-thymidine? Adv. Microb. Ecol. 13:371-425.
51. Sano, E., S. Carlson, L. Wegley, and F. Rohwer. 2004. Movement of viruses between biomes. Appl. Environ. Microbiol. 70:5842-5846.
52. Šimek, K., J. Pernthaler, M. G. Weinbauer, K. Horňá k, J. R. Dolan, J. Nedoma, M. Mašín, and R. Amann. 2001. Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Appl. Environ. Microbiol. 67:2723-2733.
53. Reference deleted.
54. Sime-Ngando, T., and A. S. Pradeep Ram. 2005. Grazers effects on prokaryotes and viruses in a freshwater microcosm experiment. Aquat. Microb. Ecol. 41:115-124.
55. Sorokin, D. Y., and J. G. Kuenen. 2005. Haloalkaliphilic sulphur-oxidizing bacteria in soda lakes. FEMS Microbiol. Rev. 29:685-702.
56. Strickland, J. D. H., and T. R. Parson. 1968. A practical handbook of seawater analysis. Fisheries Research Board of Canada bulletin. Fisheries Research Board of Canada, Ottawa, Ontario, Canada.
57. Suttle, C. A. 2005. Viruses in the sea. Nature 437:356-361.
58. Suttle, C. A. 2005. The viriosphere: the greatest biological diversity on Earth and driver of global processes. Environ. Microbiol. 7:481-482.
59. Talling, J. F., and J. Lemoalle. 1998. Ecological Dynamics of tropical inland waters. Cambridge University Press, Cambridge, United Kingdom.
60. Tapper, M. A., and R. E. Hicks. 1998. Temperate viruses and lysogeny in Lake Superior bacterioplankton. Limnol. Oceanogr. 43:95-103.
61. Thingstad, T. F., and R. Lignell. 1997. Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand. Aquat. Microb. Ecol. 13:19-27.
62. Torréton, J.-P., J. Pagès, and V. Talbot. 2002. Bacterioplankton and phytoplankton biomass and production in Tuamotu atoll lagoons. Aquat. Microb. Ecol. 28:267-277.
63. Torsvik, V., L. Øvreas, and T. F. Thingstad. 2002. Prokaryotic diversity-magnitude, dynamics, and controlling factors. Science 296:1064-1066.
64. Vrede, K., U. Stensdotter, and E. S. Lindstrom. 2003. Viral and bacterioplankton dynamics in two lakes with different humic contents. Microb. Ecol. 46:406-415.
65. Weinbauer, M. G., and P. Peduzzi. 1994. Frequency, size and distribution of bacteriophages in different marine bacterial morphotypes. Mar. Ecol. Prog. Ser. 108:11-20.
66. Weinbauer, M. G., and M. G. Höfle. 1998. Significance of virus lysis and flagellate grazing as factors controlling bacterioplankton production in a eutrophic lake. Appl. Environ. Microbiol. 64:431-438.
67. Weinbauer, M. G., C. Winter, and M. G. Höfle. 2002. Reconsidering transmission electron microscopy based estimates of viral infection of bacterioplankton using conversion factors derived from natural communities. Aquat. Microb. Ecol. 27:103-110.
68. Weinbauer, M. G., I. Brettar, and M. G. Höfle. 2003. Lysogeny and virus-induced mortality of bacterioplankton in surface, deep, and anoxic marine waters. Limnol. Oceanogr. 48:1457-1465.
69. Weinbauer, M. G. 2004. Ecology of prokaryotic viruses. FEMS Microbiol. Rev. 28:127-181.
70. Weinbauer, M. G., and F. Rassoulzadegan. 2004. Are viruses driving microbial diversification and diversity? Environ. Microbiol. 6:1-11.
71. Winter, C., A. Smit, G. J. Herndl, and M. G. Weinbauer. 2005. Linking bacterial richness with abundance and prokaryotic activity. Limnol. Oceanogr. 50:968-977.
72. Wommack, K. E., and R. R. Colwell. 2000. Virioplankton: viruses in aquatic ecosystems. Microbiol. Mol. Biol. Rev. 64:69-114.