Linking bacterial richness with viral abundance and prokaryotic activity

Limnology and Oceanography

Volumn 50, Issue 3, 2005, Pages 968-977

  Winter, Christian ^a,b   Smit, Arjan ^a   Herndl, Gerhard J ^a   Weinbauer, Markus G ^a,b  

^a ROYAL NETHERLANDS INSTITUTE FOR SEA RESEARCH   (Netherlands)

^b CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ABUNDANCE; BACTERIUM; SPECIES RICHNESS; VIRUS;

ATLANTIC OCEAN; NORTH SEA; OCEANIC REGIONS; WORLD;

ARCHAEA; BACTERIA (MICROORGANISMS); PROKARYOTA;

EID: 20044364549     PISSN: 00243590     EISSN: None     Source Type: Journal    
DOI: 10.4319/lo.2005.50.3.0968     Document Type: Article

References (30)

1. ARRIETA, J. M., AND G. J. HERNDL. 2002. Changes in bacterial beta-glucosidase diversity during a coastal phytoplankton bloom. Limnol. Oceanogr. 47: 594-599.
2. CORINALDESI, C., E. CREVATIN, P. DEL NEGRO, M. MARINI, A. RUSSO, S. FONDA-UMANI, AND R. DANOVARO. 2003. Large-scale distribution of virioplankton in the Adriatic Sea: Testing the trophic state control hypothesis. Appl. Environ. Microbiol. 69: 2664-2673.
3. DELONG, E. F. 1992. Archaea in coastal marine environments. Proc. Natl. Acad. Sci. USA 89: 5685-5689.
4. HEWSON, I., G. A. VARGO, AND J. A. FUHRMAN. 2003. Bacterial diversity in shallow oligotrophic marine benthos and overlying waters: Effects of virus infection, containment, and nutrient enrichment. Microb. Ecol. 46: 322-336.
5. KIRCHMAN, D. L., E. K'NESS, AND R. E. HODSON. 1985. Leucine incorporation and its potential as a measure of protein synthesis by bacteria in natural aquatic systems. Appl. Environ. Microbiol. 49: 599-607.
6. LANE, D. J. 1991. 16S/23S rRNA sequencing, p. 115-176. In E. Stackebrandt and M. Goodfellow [eds.], Nucleic acid techniques in bacterial systematics. Wiley.
7. LEE, S., AND J. A. FUHRMAN. 1987. Relationships between biovolume and biomass of naturally derived marine bacterioplankton. Appl. Environ. Microbiol. 53: 1298-1303.
8. MARSH, P., AND E. M. H. WELLINGTON. 1994. Phage-host interactions in soil. FEMS Microbiol. Ecol. 15: 99-107.
9. MIDDELBOE, M., Å. HAGSTRÖM, N. BLACKBURN, B. SINN, U. FISCHER, N. H. BORCH, J. PINHASSI, K. SIMU, AND M. G. LORENZ. 2001. Effects of bacteriophages on the population dynamics of four strains of pelagic bacteria. Microb. Ecol. 42: 395-406.
10. MOESENEDER, M. M., C. WINTER, J. M. ARRIETA, AND G. J. HERNDL. 2001a. Terminal-restriction fragment length polymorphism (T-RFLP) screening of a marine archaeal clone library to determine the different phylotypes. J. Microb. Methods 44: 159-172.
11. _, _, AND G. J. HERNDL. 2001b. Horizontal and vertical complexity of attached and free-living bacteria of the eastern Mediterranean Sea, determined by 16S rDNA and 16S rRNA fingerprints. Limnol. Oceanogr. 46: 95-107.
12. NOBLE, R. T., AND J. A. FUHRMAN. 1997. Virus decay and its causes in coastal waters. Appl. Environ. Microbiol. 63: 77-83.
13. _ AND _. 1998. Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria. Aquat. Microb. Ecol. 14: 113-118.
14. PERNTHALER, A., C. M. PRESTON, J. PERNTHALER, E. F. DELONG, AND R. AMANN. 2002. Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacteria and archaea. Appl. Environ. Microbiol. 68: 661-667.
15. RAPPÉ, M. S., P. F. KEMP, AND S. J. GIOVANNONI. 1997. Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina. Limnol. Oceanogr. 42: 811-826.
16. RIEMAN, B., R. T. BELL, AND N. O. G. JØRGENSEN. 1990. Incorporation of thymidine, adenine and leucine into natural bacterial assemblages. Mar. Ecol. Prog. Ser. 65: 87-94.
17. SCHAUER, M., V. BALAGUÉ, C. PEDRÓS-ALIÓ, AND R. MASSANA. 2003. Seasonal changes in the taxonomic composition of bacterioplankton in a coastal oligotrophic system. Aquat. Microb. Ecol. 31: 163-174.
18. SCHWALBACH, M. S., I. HEWSON, AND J. A. FUHRMAN. 2004. Viral effects on bacterial community composition in marine plankton microcosms. Aquat. Microb. Ecol. 34: 117-127.
19. ŠIMEK, K., K. HORNÁK, M. MASÍN, U. CHRISTAKI, J. NEDOMA, M. G. WEINBAUER, AND J. R. DOLAN. 2003. Comparing the effects of resource enrichment and grazing on a bacterioplankton community of a meso-eutrophic reservoir. Aquat. Microb. Ecol. 31: 123-135.
20. _, J. PERNTHALER, M. G. WEINBAUER, H. KORNÁK, J. R. DOLAN, J. NEDOMA, M. MASIN, AND R. AMANN. 2001. Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Appl. Environ. Microbiol. 67: 2723-2733.
21. SUTTLE, C. A., AND F. CHEN. 1992. Mechanisms and rates of decay of marine viruses in seawater. Appl. Environ. Microbiol. 58: 3721-3729.
22. THINGSTAD, T. F. 2000. Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems. Limnol. Oceanogr. 45: 1320-1328.
23. _, AND R. LIGNELL. 1997. Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand. Aquat. Microb. Ecol. 13: 19-27.
24. THYRHAUG, R., A. LARSEN, T. F. THINGSTAD, AND G. BRATBAK. 2003. Stable coexistence in marine algal host-virus systems. Mar. Ecol. Prog. Ser. 254: 27-35.
25. WEINBAUER, M. G. 2004. Ecology of prokaryotic viruses. FEMS Microbiol. Rev. 28: 127-181.
26. _, U. CHRISTAKI, J. NEDOMA, AND K. ŠIMEK. 2003. Comparing the effects of resource enrichment and grazing on viral production in a meso-eutrophic reservoir. Aquat. Microb. Ecol. 31: 137-144.
27. WINTER, C., G. J. HERNDL, AND M. G. WEINBAUER. 2004a. Diel cycles in viral infection of bacterioplankton in the North Sea. Aquat. Microb. Ecol. 35: 207-216.
28. _, A. SMIT, G. J. HERNDL, AND M. G. WEINBAUER. 2004b. Impact of virioplankton on archaeal and bacterial community richness as assessed in seawater batch cultures. Appl. Environ. Microbiol. 70: 804-813.
29. WOMMACK, K. E., AND R. R. COLWELL. 2000. Virioplankton: Viruses in aquatic ecosystems. Microbiol. Mol. Biol. Rev. 64: 69-114.
30. ZUBKOV, M. V., B. M. FUCHS, P. H. BURKILL, AND R. AMANN. 2001. Comparison of cellular and biomass specific activities of dominant bacterioplankton groups in stratified waters of the Celtic Sea. Appl. Environ. Microbiol. 67: 5210-5218.