메뉴 건너뛰기




Volumn 257, Issue 1-4, 2006, Pages 68-77

Complete mitochondrial DNA sequence of the Lake Biwa wild strain of common carp (Cyprinus carpio L.): further evidence for an ancient origin

Author keywords

Common carp; Complete mitochondrial DNA sequence; Cyprinus carpio; Lake Biwa

Indexed keywords

DATA SET; FISH; MITOCHONDRIAL DNA; PHYLOGENETICS;

EID: 33747031772     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2006.03.040     Document Type: Article
Times cited : (72)

References (48)
  • 2
    • 0001078605 scopus 로고
    • Origin and domestication of the wild carp, Cyprinus carpio: from Roman gourmets to swimming flowers
    • Balon E.K. Origin and domestication of the wild carp, Cyprinus carpio: from Roman gourmets to swimming flowers. Aquaculture 129 (1995) 3-48
    • (1995) Aquaculture , vol.129 , pp. 3-48
    • Balon, E.K.1
  • 3
    • 0038501888 scopus 로고    scopus 로고
    • Cyprinus carpio (Linnaeus, 1758)
    • Banarescu P.M., and Paepke H.-J. (Eds), Academic Press, London
    • Barus V., Penaz M., and Kohlmann K. Cyprinus carpio (Linnaeus, 1758). In: Banarescu P.M., and Paepke H.-J. (Eds). The Freshwater Fishes of Europe vol. 5/III (2001), Academic Press, London 85-179
    • (2001) The Freshwater Fishes of Europe , vol.5 , Issue.3 , pp. 85-179
    • Barus, V.1    Penaz, M.2    Kohlmann, K.3
  • 7
    • 0028082089 scopus 로고
    • The complete nucleotide sequence and gene organization of carp (Cyprinus carpio) mitochondrial genome
    • Chang Y.C., Huang F., and Lo T.B. The complete nucleotide sequence and gene organization of carp (Cyprinus carpio) mitochondrial genome. J. Mol. Evol. 38 (1994) 138-155
    • (1994) J. Mol. Evol. , vol.38 , pp. 138-155
    • Chang, Y.C.1    Huang, F.2    Lo, T.B.3
  • 9
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 10
    • 0037411570 scopus 로고    scopus 로고
    • mtDNA sequence data supports an Asian ancestry and single introduction of the common carp into the Danube Basin
    • Froufe E., Magyary I., Lehoczky I., and Weiss S. mtDNA sequence data supports an Asian ancestry and single introduction of the common carp into the Danube Basin. J. Fish Biol. 61 (2002) 301-304
    • (2002) J. Fish Biol. , vol.61 , pp. 301-304
    • Froufe, E.1    Magyary, I.2    Lehoczky, I.3    Weiss, S.4
  • 12
    • 0037060167 scopus 로고    scopus 로고
    • PCR-RFLP analysis of the mitochondrial ND-3/4 and ND-5/6 gene polymorphisms in the European and East Asian subspecies of common carp (Cyprinus carpio L.)
    • Gross R., Kohlmann K., and Kersten P. PCR-RFLP analysis of the mitochondrial ND-3/4 and ND-5/6 gene polymorphisms in the European and East Asian subspecies of common carp (Cyprinus carpio L.). Aquaculture 204 (2002) 507-516
    • (2002) Aquaculture , vol.204 , pp. 507-516
    • Gross, R.1    Kohlmann, K.2    Kersten, P.3
  • 13
    • 0027225783 scopus 로고
    • A compilation of large subunit (23S and 23S-like) ribosome RNA structures
    • Gutell R.R., Gray M.W., and Schnare M.N. A compilation of large subunit (23S and 23S-like) ribosome RNA structures. Nucleic Acids Res. 21 (1993) 3055-3074
    • (1993) Nucleic Acids Res. , vol.21 , pp. 3055-3074
    • Gutell, R.R.1    Gray, M.W.2    Schnare, M.N.3
  • 14
    • 58149321477 scopus 로고
    • A review of genetic improvement of the common carp (Cyprinus carpio L.) and other cyprinids by crossbreeding, hybridization and selection
    • Hulata G. A review of genetic improvement of the common carp (Cyprinus carpio L.) and other cyprinids by crossbreeding, hybridization and selection. Aquaculture 129 (1995) 143-155
    • (1995) Aquaculture , vol.129 , pp. 143-155
    • Hulata, G.1
  • 15
    • 0034619822 scopus 로고    scopus 로고
    • Mitochondrial genome variation and the origin of modern humans
    • Ingman M., Kaessmann H., Pääbo S., and Gyllensten U. Mitochondrial genome variation and the origin of modern humans. Nature 408 (2000) 708-713
    • (2000) Nature , vol.408 , pp. 708-713
    • Ingman, M.1    Kaessmann, H.2    Pääbo, S.3    Gyllensten, U.4
  • 16
    • 0000675190 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the Japanese sardine Sardinops melanostictus
    • Inoue J.G., Miya M., Tsukamoto K., and Nishida M. Complete mitochondrial DNA sequence of the Japanese sardine Sardinops melanostictus. Fish. Sci. 66 (2000) 924-932
    • (2000) Fish. Sci. , vol.66 , pp. 924-932
    • Inoue, J.G.1    Miya, M.2    Tsukamoto, K.3    Nishida, M.4
  • 17
  • 18
    • 0035049036 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequences of Conger myriaster (Teleostei: Anguilliformes): novel gene order for vertebrate mitochondrial genomes and the phylogenetic implications for anguilliform families
    • Inoue J.G., Miya M., Tsukamoto K., and Nishida M. Complete mitochondrial DNA sequences of Conger myriaster (Teleostei: Anguilliformes): novel gene order for vertebrate mitochondrial genomes and the phylogenetic implications for anguilliform families. J. Mol. Evol. 52 (2001) 311-320
    • (2001) J. Mol. Evol. , vol.52 , pp. 311-320
    • Inoue, J.G.1    Miya, M.2    Tsukamoto, K.3    Nishida, M.4
  • 19
    • 17044393500 scopus 로고    scopus 로고
    • The mitochondrial genome of Indonesian coelacanth Latimeria menadoensis (Sarcopterygii: Coelacanthiformes) and divergence time estimation between the two coelacanths
    • Inoue J.G., Miya M., Venkatesh B., and Nishida M. The mitochondrial genome of Indonesian coelacanth Latimeria menadoensis (Sarcopterygii: Coelacanthiformes) and divergence time estimation between the two coelacanths. Gene 349 (2005) 227-235
    • (2005) Gene , vol.349 , pp. 227-235
    • Inoue, J.G.1    Miya, M.2    Venkatesh, B.3    Nishida, M.4
  • 20
    • 20544461633 scopus 로고
    • Homologous hereditary variation and evolution of the common carp (Cyprinus carpio L.)
    • (in Russian)
    • Kirpichnikov V.S. Homologous hereditary variation and evolution of the common carp (Cyprinus carpio L.). Genetika 3 (1967) 34-47 (in Russian)
    • (1967) Genetika , vol.3 , pp. 34-47
    • Kirpichnikov, V.S.1
  • 21
    • 0033616759 scopus 로고    scopus 로고
    • Genetic variability of German and foreign common carp (Cyprinus carpio L.) populations
    • Kohlmann K., and Kersten P. Genetic variability of German and foreign common carp (Cyprinus carpio L.) populations. Aquaculture 173 (1999) 435-445
    • (1999) Aquaculture , vol.173 , pp. 435-445
    • Kohlmann, K.1    Kersten, P.2
  • 22
    • 0142260551 scopus 로고    scopus 로고
    • Genetic variability and structure of common carp (Cyprinus carpio) populations throughout the distribution range inferred from allozyme, microsatellite and mitochondrial DNA markers
    • Kohlmann K., Gross R., Murakaeva A., and Kersten P. Genetic variability and structure of common carp (Cyprinus carpio) populations throughout the distribution range inferred from allozyme, microsatellite and mitochondrial DNA markers. Aquat. Living Resour. 16 (2003) 421-431
    • (2003) Aquat. Living Resour. , vol.16 , pp. 421-431
    • Kohlmann, K.1    Gross, R.2    Murakaeva, A.3    Kersten, P.4
  • 23
    • 19744380495 scopus 로고    scopus 로고
    • Microsatellite-based genetic variability and differentiation of domesticated, wild and feral common carp (Cyprinus carpio L.) populations
    • Kohlmann K., Kersten P., and Flajshans M. Microsatellite-based genetic variability and differentiation of domesticated, wild and feral common carp (Cyprinus carpio L.) populations. Aquaculture 247 (2005) 253-266
    • (2005) Aquaculture , vol.247 , pp. 253-266
    • Kohlmann, K.1    Kersten, P.2    Flajshans, M.3
  • 24
    • 0004172987 scopus 로고    scopus 로고
    • WHT Publication (Pty) Ltd, Cotta, Colombo 198 pp.
    • Kottelat M. Fishes of Laos (2001), WHT Publication (Pty) Ltd, Cotta, Colombo 198 pp.
    • (2001) Fishes of Laos
    • Kottelat, M.1
  • 25
    • 1242342365 scopus 로고    scopus 로고
    • Genetic diversity and selective breeding of red common carp in China
    • Li S.F., and Wang C.H. Genetic diversity and selective breeding of red common carp in China. INGA Q. 24 3-4 (2001) 56-61
    • (2001) INGA Q. , vol.24 , Issue.3 -4 , pp. 56-61
    • Li, S.F.1    Wang, C.H.2
  • 26
    • 4344581098 scopus 로고    scopus 로고
    • Gene rearrangements and evolution of tRNA pseudogenes in the mitochondrial DNA of the parrotfish (Teleostei: Perciformes: Scaridae)
    • Mabuchi K., Miya M., Satoh T.P., Westneat M.W., and Nishida M. Gene rearrangements and evolution of tRNA pseudogenes in the mitochondrial DNA of the parrotfish (Teleostei: Perciformes: Scaridae). J. Mol. Evol. 59 (2004) 287-297
    • (2004) J. Mol. Evol. , vol.59 , pp. 287-297
    • Mabuchi, K.1    Miya, M.2    Satoh, T.P.3    Westneat, M.W.4    Nishida, M.5
  • 27
    • 20544435994 scopus 로고    scopus 로고
    • Discovery of an ancient lineage of Cyprinus carpio from Lake Biwa, central Japan, based on mtDNA sequence data, with reference to possible multiple origins of koi
    • Mabuchi K., Senou H., Suzuki T., and Nishida M. Discovery of an ancient lineage of Cyprinus carpio from Lake Biwa, central Japan, based on mtDNA sequence data, with reference to possible multiple origins of koi. J. Fish Biol. 66 (2005) 1516-1528
    • (2005) J. Fish Biol. , vol.66 , pp. 1516-1528
    • Mabuchi, K.1    Senou, H.2    Suzuki, T.3    Nishida, M.4
  • 29
    • 0033191527 scopus 로고    scopus 로고
    • Organization of the mitochondrial genome of a deep-sea fish, Gonostoma gracile (Teleostei: Stomiiformes): first example of transfer RNA gene rearrangements in bony fishes
    • Miya M., and Nishida M. Organization of the mitochondrial genome of a deep-sea fish, Gonostoma gracile (Teleostei: Stomiiformes): first example of transfer RNA gene rearrangements in bony fishes. Mar. Biotechnol. 1 (1999) 416-426
    • (1999) Mar. Biotechnol. , vol.1 , pp. 416-426
    • Miya, M.1    Nishida, M.2
  • 30
    • 0034497887 scopus 로고    scopus 로고
    • Use of mitogenomic information in teleostean molecular phylogenetics: a tree-based exploration under the maximum-parsimony optimality criterion
    • Miya M., and Nishida M. Use of mitogenomic information in teleostean molecular phylogenetics: a tree-based exploration under the maximum-parsimony optimality criterion. Mol. Phylogenet. Evol. 17 (2000) 437-455
    • (2000) Mol. Phylogenet. Evol. , vol.17 , pp. 437-455
    • Miya, M.1    Nishida, M.2
  • 31
    • 22044450491 scopus 로고    scopus 로고
    • The phylogenetic position of toadfishes (order Batrachoidiformes) in the higher ray-finned fish as inferred from partitioned Bayesian analysis of 102 whole mitochondrial genomic sequences
    • Miya M., Satoh T.P., and Nishida M. The phylogenetic position of toadfishes (order Batrachoidiformes) in the higher ray-finned fish as inferred from partitioned Bayesian analysis of 102 whole mitochondrial genomic sequences. Biol. J. Linn. Soc. 85 (2005) 289-306
    • (2005) Biol. J. Linn. Soc. , vol.85 , pp. 289-306
    • Miya, M.1    Satoh, T.P.2    Nishida, M.3
  • 32
    • 0013276730 scopus 로고
    • Pliocene cyprinid pharyngeal teeth from Japan and west Asia Neogene cyprinid zoogeography
    • Uyeno T., Arai R., Taniuchi T., and Matsuura K. (Eds), Ichthyological Society of Japan, Tokyo
    • Nakajima T. Pliocene cyprinid pharyngeal teeth from Japan and west Asia Neogene cyprinid zoogeography. In: Uyeno T., Arai R., Taniuchi T., and Matsuura K. (Eds). Indo-Pacific Fish Biology (1986), Ichthyological Society of Japan, Tokyo 502-513
    • (1986) Indo-Pacific Fish Biology , pp. 502-513
    • Nakajima, T.1
  • 33
    • 33747032581 scopus 로고    scopus 로고
    • Nakajima, T., 1994. Cyprinid fishes. In: Research Group for Natural History of Lake Biwa (Ed.), The Natural History of Lake Biwa Yasaka shobo, Tokyo, pp. 235-275 (in Japanese).
  • 34
    • 20544441238 scopus 로고    scopus 로고
    • Common carp as an introduced fish
    • Nakai K., Nakajima T., and Rossiter A. (Eds), Lake Biwa Museum, Kusatsu (in Japanese)
    • Nakajima T. Common carp as an introduced fish. In: Nakai K., Nakajima T., and Rossiter A. (Eds). Alien Species: Their Biology, Impact and Control (2003), Lake Biwa Museum, Kusatsu 86-87 (in Japanese)
    • (2003) Alien Species: Their Biology, Impact and Control , pp. 86-87
    • Nakajima, T.1
  • 35
    • 0021028363 scopus 로고
    • Nucleotide sequence evidence for rapid genotypic shifts in the bovine mitochondrial DNA D-loop
    • Olivio P.D., Van de Walle M.J., Laipis P.J., and Hauswirth W.W. Nucleotide sequence evidence for rapid genotypic shifts in the bovine mitochondrial DNA D-loop. Nature 306 (1983) 400-402
    • (1983) Nature , vol.306 , pp. 400-402
    • Olivio, P.D.1    Van de Walle, M.J.2    Laipis, P.J.3    Hauswirth, W.W.4
  • 37
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 38
    • 35448968400 scopus 로고    scopus 로고
    • Lake Biwa as a topical ancient lake
    • Ancient Lakes: Biodiversity, Ecology and Evolution. Rossiter A., and Kawanabe H. (Eds), Academic Press, London
    • Rossiter A. Lake Biwa as a topical ancient lake. In: Rossiter A., and Kawanabe H. (Eds). Ancient Lakes: Biodiversity, Ecology and Evolution. Advances in Ecological Research vol. 31 (2000), Academic Press, London 571-598
    • (2000) Advances in Ecological Research , vol.31 , pp. 571-598
    • Rossiter, A.1
  • 39
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 40
    • 0003252192 scopus 로고    scopus 로고
    • Preparation and analysis of eukaryotic genomic DNA
    • Sambrook J., and Russell D.W. (Eds), Cold Spring Harbor Laboratory Press, New York
    • Sambrook J., and Russell D.W. Preparation and analysis of eukaryotic genomic DNA. In: Sambrook J., and Russell D.W. (Eds). Molecular Cloning vol. 1, 3rd edition (2001), Cold Spring Harbor Laboratory Press, New York 6.4-6.11
    • (2001) Molecular Cloning , vol.1 3rd edition
    • Sambrook, J.1    Russell, D.W.2
  • 42
    • 13844272935 scopus 로고    scopus 로고
    • Using mitochondrial nucleotide sequences to investigate diversity and genealogical relationships within common carp (Cyprinus carpio L.)
    • Thai B.T., Burridge C.P., Pham T.A., and Austin C.M. Using mitochondrial nucleotide sequences to investigate diversity and genealogical relationships within common carp (Cyprinus carpio L.). Anim. Genet. 36 (2004) 23-28
    • (2004) Anim. Genet. , vol.36 , pp. 23-28
    • Thai, B.T.1    Burridge, C.P.2    Pham, T.A.3    Austin, C.M.4
  • 43
    • 0008185632 scopus 로고
    • Genetic resources of common carp in Vietnam
    • Thien T.M., and Trong T.D. Genetic resources of common carp in Vietnam. Aquaculture 129 (1995) 216
    • (1995) Aquaculture , vol.129 , pp. 216
    • Thien, T.M.1    Trong, T.D.2
  • 44
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX-Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak E., Jeanmougin F., and Higgins D.G. The ClustalX-Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, E.3    Jeanmougin, F.4    Higgins, D.G.5
  • 45
    • 1242277326 scopus 로고    scopus 로고
    • Phylogenetic relationships of ornamental (koi) carp, Oujiang color carp and Long-fin carp revealed by mitochondrial DNA COII gene sequences and RAPD analysis
    • Wang C., and Li S. Phylogenetic relationships of ornamental (koi) carp, Oujiang color carp and Long-fin carp revealed by mitochondrial DNA COII gene sequences and RAPD analysis. Aquaculture 231 (2004) 83-91
    • (2004) Aquaculture , vol.231 , pp. 83-91
    • Wang, C.1    Li, S.2
  • 47
    • 0038041330 scopus 로고    scopus 로고
    • Genetic divergence between Cyprinus carpio carpio and Cyprinus carpio haematopterus as assessed by mitochondrial DNA analysis, with emphasis on origin of European domestic carp
    • Zhou J., Wu Q., Ye Y., and Tong J. Genetic divergence between Cyprinus carpio carpio and Cyprinus carpio haematopterus as assessed by mitochondrial DNA analysis, with emphasis on origin of European domestic carp. Genetica 119 (2003) 93-97
    • (2003) Genetica , vol.119 , pp. 93-97
    • Zhou, J.1    Wu, Q.2    Ye, Y.3    Tong, J.4
  • 48
    • 9644276775 scopus 로고    scopus 로고
    • Molecular phylogeny of three subspecies of common carp Cyprinus carpio, based on sequence analysis of cytochrome b and control region of mtDNA
    • Zhou J., Wu Q., and Ye Y. Molecular phylogeny of three subspecies of common carp Cyprinus carpio, based on sequence analysis of cytochrome b and control region of mtDNA. J. Zoolog. Syst. Evol. Res. 42 (2004) 266-269
    • (2004) J. Zoolog. Syst. Evol. Res. , vol.42 , pp. 266-269
    • Zhou, J.1    Wu, Q.2    Ye, Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.