Host-pathogen studies in the post-genomic era

Genome Biology

Volumn 1, Issue 2, 2000, Pages

  Kellam, Paul ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; GENOMICS; HOST PARASITE INTERACTION; HUMAN; INFECTION; MICROBIOLOGY; OPEN READING FRAME; REVIEW; VIROLOGY; VIRUS GENE;

ANIMALS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENES, VIRAL; GENOMICS; HOST-PARASITE RELATIONS; HUMANS; INFECTION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; OPEN READING FRAMES;

EID: 33746746552     PISSN: 14656906     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (19)

1. Sanger F, Air GM, Barrell BG, Brown ML, Coulson AR, Fiddes CA, Hutchison CA, Slocombe PM, Smith M: Nucleotide sequence of bacteriophage phi XI74 DNA. Nature 1977, 265:687-695.
2. Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, Kerlavage AR, Bult CJ, Tomb JF, Dougherty BA, Merrick JM et al.: Whole-genome random sequencing and assembly of Haemophilus influenzas Rd. Science 1995. 269:496-512.
3. The chipping forecast. Not Genet 1999, 2l(Suppl) [http://www.nature.com/ng/chips_inters titial.html].
4. Aach J, Rindone W, Church GM: Systematic management and analysis of yeast gene expression data. Genome Res 2000, 10:431-445.
5. Cambers J, Angulo A, Amaratunga D, Guo H, Jiang Y, Wan JS, Bittner A, Frueh K, Jackson MR, Peterson PA, Erlander MG, Ghazal P: DNA microarrays of the complex human cytomegalovirus genome: profiling kinetic class with drug sensitivity of viral gene expression. J Viral 1999, 73:5757-5766.
6. Zhu H, Cong J-P, Mamtora G, Gingeras T, Shenk T: Cellular gene expression altered by human cytomegalovirus: global monitoring with oligonucleotide arrays. Proc Natl Acod Sei USA. 1998, 95:14470-14475.
7. Giess GK, Bumgarner RE, An MC, Agy MB, Van't Wont AB, Hammersmark E Carter VS, Upchurch D, Mullins Jl, Katze MG: Largescale monitoring of host cell gene expression during HIV-1 infection using cDNA microarrays. Virology 2000, 266:8-16.
8. Chang YE, Laimins LA: Microarray analysis identifies interferoninducible genes and Stat-1 as major transcriptional targets of human papillomavirus type 31. J Virol 2000,74:4174-4182.
9. Cohen P, Bouaboula M, Bellis M, Baron V, Jbilo O, Poinot-Chazel C, Galiegue S, Hadibi E-H, Casellas P: Monitoring cellular responses to Urteri'o monocytogenes with oligonucleotide arrays. ] Biol Chem 2000, 275:11181-11190.
10. Eckmann 1_ Smith JR, Housley MP, Dwinell MB, Kagnoff MF: Analysis of high density cDNA arrays of altered gene expression in human intestinal epithelial cells in response to infection with the invasive enteric bacteria So/mone//o. J Biol Chem 2000, 275:14084-14094.
11. Eisen MB, Spellman PT, Brown PO, Botstein D: Cluster analysis and display of genome-wide expression patterns. Proc Nat/ AcadSaUSA 1998,95:14863-14868.
12. Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, Rosenwald A, Boldrick JC, Sabet H, Tran T, Yu X et al.: Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Noture 2000, 403:503-511.
13. Chu S, DeRisi J, Eisen M, Mulholland J, Botstein D, Brown PO, Herskowitz 1: The transcriptional program of sporulation in budding yeast. Science 1998, 282:699-705.
14. Luster AD: Chemokines - chemotatic cytokines that mediate inflammation. N EnglJ Med 1998, 338:436-445.
15. Olivier M, Romero-Gallo B-J, Matte C, Blanchette J, Posner Bl, Trembley MJ, Faure R: Modulation of interferon-y induced macrophage activation by phophotyrosine phosphatases inhibition. J Biol Chem 1998, 273:13944-13949.
16. Barbeau B, Bernier R, Dumais N, Braind G, Olivier M, Faure R, et al: Activation of HIV-1 long terminal repeat transcription and virus replication via NF-x:B dependent and independent pathways by potent phosphotyrosine phosphatase inhibitors, the peroxovanadium compounds, j Biol Chem 1997,272:12968-12977.
17. Abbott A: Bioinformatics institute plans public database for gene expression data. Nature 1999, 398:646.
18. The ArrayExpress database [http://www.ebi.ac.uk/arrayexpress/].
19. Ermolaeva O, Rastogi M, Pruitt KD, Schuler GD, Bittner ML. Chen Y, Simon R, Meltzer P, Trent JM, Boguski MS: Data management and analysis for gene expression arrays. Not Genet 1998, 20:19-23.