-
1
-
-
0025261918
-
Solvent effects on protein association and protein folding
-
Ben-Naim A. Solvent effects on protein association and protein folding. Biopolymers. 29:1990;567-596.
-
(1990)
Biopolymers
, vol.29
, pp. 567-596
-
-
Ben-Naim, A.1
-
2
-
-
0024697045
-
Solvation thermodynamics of biopolymers, I. Separation of the volume and surface interactions with estimates for proteins
-
Ben-Naim A., Ting K.-L., Jernigan R. L. Solvation thermodynamics of biopolymers, I. Separation of the volume and surface interactions with estimates for proteins. Biopolymers. 28:1989a;1309-1325.
-
(1989)
Biopolymers
, vol.28
, pp. 1309-1325
-
-
Ben-Naim, A.1
Ting, K.-L.2
Jernigan, R.L.3
-
3
-
-
0024698553
-
Solvation thermodynamics of biopolymers, II. Correlation between functional groups
-
Ben-Naim A., Ting K.-L., Jernigan R. L. Solvation thermodynamics of biopolymers, II. Correlation between functional groups. Biopolymers. 28:1989b;1327-1337.
-
(1989)
Biopolymers
, vol.28
, pp. 1327-1337
-
-
Ben-Naim, A.1
Ting, K.-L.2
Jernigan, R.L.3
-
4
-
-
0017411710
-
The protein data bank: A computer based archival file for macromolecular structures
-
Bernstein F. C., Koetzle T. F., Williams G. J. B., Meyer E. F. Jr, Brice M. D., Rogers J. R., Kennard O., Shimanouchi T., Tasumi M. The protein data bank: a computer based archival file for macromolecular structures. J. Mol. Biol. 112:1977;535-542.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
Meyer E.F., Jr.4
Brice, M.D.5
Rogers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
5
-
-
0028014642
-
Bound water molecules and conformational stabilization help mediate an antigen-antibody associated
-
Bhat T. N., Bentley G. A., Boulot G., Greene M. I., Tello D., Dall'Acqua W., Soneson, S., Schwartz F. P., Mariuzza R. A., Poljak R. J. Bound water molecules and conformational stabilization help mediate an antigen-antibody associated. Proc. Natl Acad. Sci. USA. 91:1994;1089-1093.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 1089-1093
-
-
Bhat, T.N.1
Bentley, G.A.2
Boulot, G.3
Greene, M.I.4
Tello, D.5
Dall'Acqua, W.6
Soneson, S.7
Schwartz, F.P.8
Mariuzza, R.A.9
Poljak, R.J.10
-
6
-
-
20544433165
-
Van der Waals volumes and radii
-
Bondi A. Van der Waals volumes and radii. J. Phys. Chem. 68:1964;441-449.
-
(1964)
J. Phys. Chem.
, vol.68
, pp. 441-449
-
-
Bondi, A.1
-
7
-
-
0028877602
-
Structural features of the reactions between antibodies and protein antigens
-
Braden B. C., Poljak R. J. Structural features of the reactions between antibodies and protein antigens. FASEB J. 9:1995a;9-16.
-
(1995)
FASEB J.
, vol.9
, pp. 9-16
-
-
Braden, B.C.1
Poljak, R.J.2
-
8
-
-
0029364787
-
Conservation of water molecules in an antibody-antigen interaction
-
Braden B. C., Poljak R. J. Conservation of water molecules in an antibody-antigen interaction. J. Mol. Recogn. 8:1995b;317-325.
-
(1995)
J. Mol. Recogn.
, vol.8
, pp. 317-325
-
-
Braden, B.C.1
Poljak, R.J.2
-
9
-
-
0030598346
-
Crystal structure of an Fv-Fv idiotope-anti-idiotope complex at 1.9 Å resolution
-
Braden B. C., Fields B. A., Ysern X., Dall'Acqua W., Goldbaum F. A., Poljak R. J., Mariuzza R. A. Crystal structure of an Fv-Fv idiotope-anti-idiotope complex at 1.9 Å resolution. J. Mol. Biol. 264:1996a;137-151.
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 137-151
-
-
Braden, B.C.1
Fields, B.A.2
Ysern, X.3
Dall'Acqua, W.4
Goldbaum, F.A.5
Poljak, R.J.6
Mariuzza, R.A.7
-
10
-
-
0029870875
-
Crystal structure of the complex of the variable domain of antibody D1.3 and the turkey egg white lysozyme: A novel conformational change in antibody CDF-L3 selects for antigen
-
Braden B. C., Fields B. A., Ysern X., Goldbaum F. A., Dall'Acqua W., Schwartz F. P., Poljak R. J., Mariuzza R. A. Crystal structure of the complex of the variable domain of antibody D1.3 and the turkey egg white lysozyme: a novel conformational change in antibody CDF-L3 selects for antigen. J. Mol. Biol. 257:1996b;889-894.
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 889-894
-
-
Braden, B.C.1
Fields, B.A.2
Ysern, X.3
Goldbaum, F.A.4
Dall'Acqua, W.5
Schwartz, F.P.6
Poljak, R.J.7
Mariuzza, R.A.8
-
11
-
-
0021504608
-
The use of double mutants to detect structural changes in the active site of tyrosyl-tRNA synthease (Bacillus stearothermophilus
-
Carter P. J, Winter G., Wilkinson A. J., Fersht A. R. The use of double mutants to detect structural changes in the active site of tyrosyl-tRNA synthease (Bacillus stearothermophilus. Cell. 38:1984;835-840.
-
(1984)
Cell
, vol.38
, pp. 835-840
-
-
Carter, P.J.1
Winter, G.2
Wilkinson, A.J.3
Fersht, A.R.4
-
12
-
-
0028916599
-
A hot spot of binding energy in a hormone-receptor interface
-
Clackson T, Wells J. A. A hot spot of binding energy in a hormone-receptor interface. Science. 267:1995;383-386.
-
(1995)
Science
, vol.267
, pp. 383-386
-
-
Clackson, T.1
Wells, J.A.2
-
13
-
-
0021107965
-
Solvent-accessible surfaces of proteins and nucleic acids
-
Connolly M. L. Solvent-accessible surfaces of proteins and nucleic acids. Science, 221:1983;709-713.
-
(1983)
Science
, vol.221
, pp. 709-713
-
-
Connolly, M.L.1
-
14
-
-
0027132013
-
Comparison of a structural and functional epitope
-
Cunningham B. C., Wells J. A. Comparison of a structural and functional epitope. J. Mol. Biol. 234:1993;554-563.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 554-563
-
-
Cunningham, B.C.1
Wells, J.A.2
-
15
-
-
0029764534
-
A mutational analysis of the binding of two different proteins to the same antibody
-
Dall'Acqua, W., Goldman E., Eisenstein E, Mariuzza R. A. A mutational analysis of the binding of two different proteins to the same antibody. Biochemistry. 35:1996;9667-9676.
-
(1996)
Biochemistry
, vol.35
, pp. 9667-9676
-
-
Dall'Acqua, W.1
Goldman, E.2
Eisenstein, E.3
Mariuzza, R.A.4
-
16
-
-
0025290527
-
The structure and function of the aspartic proteinases
-
Davies D. R. The structure and function of the aspartic proteinases. Annu. Rev. Biophys. Biophys. Chem. 19:1990;189-215.
-
(1990)
Annu. Rev. Biophys. Biophys. Chem.
, vol.19
, pp. 189-215
-
-
Davies, D.R.1
-
17
-
-
33751157933
-
Solvent induced forces between two hydrophilic groups
-
Durell S. R., Brooks B. R., Ben-Naim A. Solvent induced forces between two hydrophilic groups. J. Phys. Chem. 98:1994;2198-2202.
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 2198-2202
-
-
Durell, S.R.1
Brooks, B.R.2
Ben-Naim, A.3
-
18
-
-
0022596727
-
Solvation energy in protein folding and binding
-
Eisenberg D., McLachlan A. D. Solvation energy in protein folding and binding. Nature. 319:1986;199-203.
-
(1986)
Nature
, vol.319
, pp. 199-203
-
-
Eisenberg, D.1
McLachlan, A.D.2
-
19
-
-
16144365754
-
Enzyme flexibility, solvent and 'weak' interactions characterize thrombin-ligand interactions: Implications for drug design
-
Engh R. A., Brandstetter H., Sicher G., Eichinger A., Baumann U., Bode W., Huber R., Poll T., Rudolph R., von der Saal, W. Enzyme flexibility, solvent and 'weak' interactions characterize thrombin-ligand interactions: implications for drug design. Structure. 4:1996;1353-1362.
-
(1996)
Structure
, vol.4
, pp. 1353-1362
-
-
Engh, R.A.1
Brandstetter, H.2
Sicher, G.3
Eichinger, A.4
Baumann, U.5
Bode, W.6
Huber, R.7
Poll, T.8
Rudolph, R.9
Von Der Saal, W.10
-
20
-
-
0024511257
-
Co-operativity in protein-protein association, The structure and stability of the actin filament
-
Erickson H. P. Co-operativity in protein-protein association, The structure and stability of the actin filament. J. Mol. Biol. 206:1989;465-474.
-
(1989)
J. Mol. Biol.
, vol.206
, pp. 465-474
-
-
Erickson, H.P.1
-
21
-
-
33646195474
-
The hydrogen bond in molecular recognition
-
Fersht A. R. The hydrogen bond in molecular recognition. Trends Biochem. Sci. 12:1987;301-304.
-
(1987)
Trends Biochem. Sci.
, vol.12
, pp. 301-304
-
-
Fersht, A.R.1
-
22
-
-
0026511656
-
The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding
-
Fersht A. R., Matouschek A., Serrano L. The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding. J. Mol. Biol. 224:1992;771-782.
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 771-782
-
-
Fersht, A.R.1
Matouschek, A.2
Serrano, L.3
-
23
-
-
0024745871
-
The price of lost freedom; Entropy of bimolecular complex formation
-
Finkelstein A. V., Janin J. The price of lost freedom; entropy of bimolecular complex formation. Protein Eng. 3:1989;1-3.
-
(1989)
Protein Eng.
, vol.3
, pp. 1-3
-
-
Finkelstein, A.V.1
Janin, J.2
-
24
-
-
0029706920
-
The effect of water on the association constant and the enthalpy of reaction between lysozyme and the specific antibodies D1.3 and D44.1
-
Goldbaum F. A., Schwartz F. P., Eisenstein E., Cauerhff A., Mariuzza R. A., Poljak R. J. The effect of water on the association constant and the enthalpy of reaction between lysozyme and the specific antibodies D1.3 and D44.1. J. Mol. Recogn. 9:1996;6-12.
-
(1996)
J. Mol. Recogn
, vol.9
, pp. 6-12
-
-
Goldbaum, F.A.1
Schwartz, F.P.2
Eisenstein, E.3
Cauerhff, A.4
Mariuzza, R.A.5
Poljak, R.J.6
-
25
-
-
0027132431
-
Recognition between a bacterial ribonuclease, barnase, and its natural inhibitor, barstar
-
Guillet V., Laphorn A., Hartley R. W, Mauguen Y. Recognition between a bacterial ribonuclease, barnase, and its natural inhibitor, barstar. Structure. 1:1993;165-177.
-
(1993)
Structure
, vol.1
, pp. 165-177
-
-
Guillet, V.1
Laphorn, A.2
Hartley, R.W.3
Mauguen, Y.4
-
26
-
-
0027087369
-
Calculation of the free energy of association for protein complexes
-
Horton N., Lewis M. Calculation of the free energy of association for protein complexes. Protein Sci. 1:1992;169-181.
-
(1992)
Protein Sci.
, vol.1
, pp. 169-181
-
-
Horton, N.1
Lewis, M.2
-
27
-
-
0025123333
-
The structure of protein-protein recognition sites
-
Janin J., Chothia C. The structure of protein-protein recognition sites. J. Biol. Chem. 265:1990;16027-16030.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 16027-16030
-
-
Janin, J.1
Chothia, C.2
-
28
-
-
0008863560
-
Some factors in the interpretation of protein denaturation
-
Kauzmann W. Some factors in the interpretation of protein denaturation. Advan. Protein Chem. 14:1959;1-63.
-
(1959)
Advan. Protein Chem.
, vol.14
, pp. 1-63
-
-
Kauzmann, W.1
-
29
-
-
0011230778
-
Adaptability and specificity in DNA binding bytrp
-
Lavoie T. A., Carey J. Adaptability and specificity in DNA binding bytrp. Nucl. Acids Mol. Biol. 8:1994;184-196.
-
(1994)
Nucl. Acids Mol. Biol.
, vol.8
, pp. 184-196
-
-
Lavoie, T.A.1
Carey, J.2
-
30
-
-
0028965496
-
Long-range, small magnitude nonadditivity of mutational effects in proteins
-
LiCata V. J., Ackers G. K. Long-range, small magnitude nonadditivity of mutational effects in proteins. Biochemistry. 34:1995;3133-3139.
-
(1995)
Biochemistry
, vol.34
, pp. 3133-3139
-
-
LiCata, V.J.1
Ackers, G.K.2
-
32
-
-
0025360593
-
Heat capacities of proteins. I. Partial molar heat capacities of individual amino acid residues in aqueous solution: Hydration effect
-
Makhatadze G. I., Privalov P. L. Heat capacities of proteins. I. Partial molar heat capacities of individual amino acid residues in aqueous solution: hydration effect. J. Mol. Biol. 213:1990;375-384.
-
(1990)
J. Mol. Biol.
, vol.213
, pp. 375-384
-
-
Makhatadze, G.I.1
Privalov, P.L.2
-
33
-
-
0027410832
-
The basics of binding mechanisms of antigen recognition and mimicry by antibodies
-
Mariuzza R. A., Poljak R. J. The basics of binding mechanisms of antigen recognition and mimicry by antibodies. Curr. Opin. Immunol. 5:1993;50-55.
-
(1993)
Curr. Opin. Immunol.
, vol.5
, pp. 50-55
-
-
Mariuzza, R.A.1
Poljak, R.J.2
-
34
-
-
0028127923
-
Entropy in biological binding processes: Estimation of translational entropy loss
-
Murphy K. P., Xie D., Thompson K. S., Amzel L. M, Freire E. Entropy in biological binding processes: estimation of translational entropy loss. Proteins: Struct. Funct. Genet. 18:1994;63-67.
-
(1994)
Proteins: Struct. Funct. Genet.
, vol.18
, pp. 63-67
-
-
Murphy, K.P.1
Xie, D.2
Thompson, K.S.3
Amzel, L.M.4
Freire, E.5
-
35
-
-
0024362070
-
On the attribution of binding energy in antigen-antibody complexes McPC 603, D1.3 and HyHEL-5
-
Novotony J., Bruccoleri R. E., Saul F. A. On the attribution of binding energy in antigen-antibody complexes McPC 603, D1.3 and HyHEL-5. Biochemistry. 28:1989;4735-4749.
-
(1989)
Biochemistry
, vol.28
, pp. 4735-4749
-
-
Novotony, J.1
Bruccoleri, R.E.2
Saul, F.A.3
-
36
-
-
0025287103
-
Heat capacity of proteins. II Partial molar heat capacity of the unfolded polypeptides chain of proteins: Protein unfolding effects
-
Privalov P. L., Makhatadze G. I. Heat capacity of proteins. II Partial molar heat capacity of the unfolded polypeptides chain of proteins: protein unfolding effects. J. Mol. Biol. 213:1990;385-391.
-
(1990)
J. Mol. Biol.
, vol.213
, pp. 385-391
-
-
Privalov, P.L.1
Makhatadze, G.I.2
-
37
-
-
0026511652
-
Contribution of hydration and non-covalent interactions to the heat capacity effect on protein unfolding
-
Privalov P. L., Makhatadze G. I. Contribution of hydration and non-covalent interactions to the heat capacity effect on protein unfolding. J. Mol. Biol. 224:1992;715-723.
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 715-723
-
-
Privalov, P.L.1
Makhatadze, G.I.2
-
38
-
-
9544252936
-
Evaluation of selected chemotypes in coupled cellular and molecular target-based screens identifies novel HIV-1 zinc finger inhibitors
-
Rice W. G., Turpin J. A., Schaeffer C. A., Graham L., Clanton D., Buckheit R. W. Jr, Zaharevitz D., Summers M. F., Wallqvist A., Covell D. G. Evaluation of selected chemotypes in coupled cellular and molecular target-based screens identifies novel HIV-1 zinc finger inhibitors. J. Med. Chem. 39:1996;3606-3616.
-
(1996)
J. Med. Chem.
, vol.39
, pp. 3606-3616
-
-
Rice, W.G.1
Turpin, J.A.2
Schaeffer, C.A.3
Graham, L.4
Clanton, D.5
Buckheit R.W., Jr.6
Zaharevitz, D.7
Summers, M.F.8
Wallqvist, A.9
Covell, D.G.10
-
39
-
-
0027177102
-
The interaction of barnase with its polypeptide inhibitor barstar studied by protein engineering
-
Schreiber G., Fersht A. R. The interaction of barnase with its polypeptide inhibitor barstar studied by protein engineering. Biochemistry. 32:1993;5145-5150.
-
(1993)
Biochemistry
, vol.32
, pp. 5145-5150
-
-
Schreiber, G.1
Fersht, A.R.2
-
40
-
-
0029056922
-
Energetics of protein-protein interactions: Analysis of the barnase-barstar interface by single mutations and double mutant cycles
-
Schreiber G., Fersht A. R. Energetics of protein-protein interactions: analysis of the barnase-barstar interface by single mutations and double mutant cycles. J. Mol. Biol. 248:1995;478-486.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 478-486
-
-
Schreiber, G.1
Fersht, A.R.2
-
41
-
-
0029850471
-
High-resolution crystal structures of human cyclin-depdendent kinase 2 with and without ATP: Bound waters and natural ligands as guides for inhibitor design
-
Schulze-Gahmen U., de Bondt H. L., Kim S.-H. High-resolution crystal structures of human cyclin-depdendent kinase 2 with and without ATP: bound waters and natural ligands as guides for inhibitor design. J. Med. Chem. 39:1996;4540-4546.
-
(1996)
J. Med. Chem.
, vol.39
, pp. 4540-4546
-
-
Schulze-Gahmen, U.1
De Bondt, H.L.2
Kim, S.-H.3
-
42
-
-
0030471364
-
The role of water in sequence-independent ligand binding by an olibopeptide transporter protein
-
Tame J. R. H., Sleigh S. H., Wilkinson A. J., Ladbury J. E. The role of water in sequence-independent ligand binding by an olibopeptide transporter protein. Nature Struct. Biol. 3:1996;998-1001.
-
(1996)
Nature Struct. Biol.
, vol.3
, pp. 998-1001
-
-
Tame, J.R.H.1
Sleigh, S.H.2
Wilkinson, A.J.3
Ladbury, J.E.4
-
43
-
-
0026788012
-
Water as a ligand: Preferential binding and exclusion of denaturants in protein unfolding
-
Timasheff S. N. Water as a ligand: preferential binding and exclusion of denaturants in protein unfolding. Biochemistry. 31:1992;9857-9864.
-
(1992)
Biochemistry
, vol.31
, pp. 9857-9864
-
-
Timasheff, S.N.1
-
44
-
-
0027310845
-
The control of protein stability and association by weak interactions with water: How do solvents affect these processes?
-
Timasheff S. N. The control of protein stability and association by weak interactions with water: how do solvents affect these processes? Annu. Rev. Biophys. Struct. 22:1993;67-97.
-
(1993)
Annu. Rev. Biophys. Struct.
, vol.22
, pp. 67-97
-
-
Timasheff, S.N.1
-
45
-
-
0028227795
-
N9 neuraminidase complexes with antibodies NC41 and NC10: Empirical free energy calculations capture specificity trends observed with mutant binding data
-
Tulip W. R., Harley V. R., Webster R. G., Novotny J. N9 neuraminidase complexes with antibodies NC41 and NC10: empirical free energy calculations capture specificity trends observed with mutant binding data. Biochemistry. 33:1994;7986-7997.
-
(1994)
Biochemistry
, vol.33
, pp. 7986-7997
-
-
Tulip, W.R.1
Harley, V.R.2
Webster, R.G.3
Novotny, J.4
-
46
-
-
0029798563
-
Docking enzyme-inhibitor complexes using a preference based free-energy surface
-
Wallqvist A., Covell D. G. Docking enzyme-inhibitor complexes using a preference based free-energy surface. Proteins: Struct. Funct. Genet. 25:1996;403-419.
-
(1996)
Proteins: Struct. Funct. Genet
, vol.25
, pp. 403-419
-
-
Wallqvist, A.1
Covell, D.G.2
-
47
-
-
0029119320
-
A preference-based free-energy parameterization of enzyme-inhibitor binding. Applications to HIV-1-protease inhibitor design
-
Wallqvist, A., Jernigan R. L., Covell D. G. A preference-based free-energy parameterization of enzyme-inhibitor binding. Applications to HIV-1-protease inhibitor design. Protein Sci. 4:1995;1881-1903.
-
(1995)
Protein Sci.
, vol.4
, pp. 1881-1903
-
-
Wallqvist, A.1
Jernigan, R.L.2
Covell, D.G.3
-
48
-
-
0029989480
-
A possible involvement of solvent-induced interactions in drug design
-
Wang H., Ben-Naim A. A possible involvement of solvent-induced interactions in drug design. J. Med. Chem. 39:1996;1531-1539.
-
(1996)
J. Med. Chem.
, vol.39
, pp. 1531-1539
-
-
Wang, H.1
Ben-Naim, A.2
|