In vivo assays to study histone ubiquitylation

Methods

Volumn 31, Issue 1, 2003, Pages 59-66

  Kao, Cheng Fu ^a   Osley, Mary Ann ^a  

^a UNIVERSITY OF NEW MEXICO SCHOOL OF MEDICINE   (United States)

Author keywords

Histones; In vivo detection assays; Ubiquitylation

Indexed keywords

HISTONE;

ACETYLATION; ANALYTIC METHOD; ARTICLE; BIOACCUMULATION; BIOASSAY; CHEMICAL MODIFICATION; CONTROLLED STUDY; HELA CELL; HUMAN; HUMAN CELL; IMMUNOASSAY; METHYLATION; NONHUMAN; PHOSPHORYLATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DEGRADATION; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEIN MODIFICATION; REGULATORY MECHANISM; SACCHAROMYCES CEREVISIAE; UBIQUITINATION; YEAST;

SACCHAROMYCETALES;

EID: 0041668098     PISSN: 10462023     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1046-2023(03)00088-4     Document Type: Article

References (66)

1. Fletcher T.M., Hansen J.C. Crit. Rev. Eukaryot. Gene Expr. 6:1996;149-188.
2. Hayes J.J., Hansen J.C. Curr. Opin. Genet. Dev. 11:2001;124-129.
3. Bradbury E.M. Bioessays. 14:1992;9-16.
4. Wu J., Grunstein M. Trends Biochem. Sci. 25:2000;619-623.
5. Mizzen C., Kuo M.H., Smith E., Brownell J., Zhou J., Ohba R., Wei Y., Monaco L., Sassone-Corsi P., Allis C.D. Cold Spring Harbor Symp. Quant. Biol. 63:1998;469-481.
6. Spencer V.A., Davie J.R. Gene. 240:1999;1-12.
7. Ausio J., Abbott D.W., Wang X., Moore S.C. Biochem. Cell Biol. 79:2001;693-708.
8. Chen H.Y., Sun J.M., Zhang Y., Davie J.R., Meistrich M.L. J. Biol. Chem. 273:1998;13165-13169.
9. Goldknopf I.L., Taylor C.W., Baum R.M., Yeoman L.C., Olson M.O., Prestayko A.W., Busch H. J. Biol. Chem. 250:1975;7182-7187.
10. Goldknopf I.L., Busch H. Biochem. Biophys. Res. Commun. 65:1975;951-960.
11. Mueller R., Yasuda H., Hatch C., Bonner W., Bradbury E. J. Biol. Chem. 26:1985;5147-5153.
12. Nickel B.E., Roth S.Y., Cook R.G., Allis C.D., Davie J.R. Biochemistry. 26:1987;4417-4421.
13. Robzyk K., Recht J., Osley M.A. Science. 287:2000;501-504.
14. West M.H., Bonner W.M. Nucleic Acids Res. 8:1980;4671-4680.
15. Pham A.D., Sauer F. Science. 289:2000;2357-2360.
16. Bohm L., Crane-Robinson C., Sautiere P. Eur. J. Biochem. 106:1980;525-530.
17. Hunt L.T., Dayhoff M.O. Biochem. Biophys. Res. Commun. 74:1977;650-655.
18. Thorne A.W., Sautiere P., Briand G., Crane-Robinson C. EMBO J. 6:1987;1005-1010.
19. Ericsson C., Goldknopf I.L., Lezzi M., Daneholt B. Cell Differ. 19:1986;263-269.
20. Goldknopf I., Sudhakar S., Rosenbaum F., Busch H. Biochem. Biophys. Res. Commun. 14:1980;1253-1260.
21. Matsui S., Seon B., Sandberg A. Proc. Natl. Acad. Sci. USA. 76:1976;6386-6390.
22. Mimnaugh E., Chen H., Davie J., Celis J., Neckers L. Biochemistry. 36:1997;14418-14429.
23. Seale R.L. Nucleic Acids Res. 9:1981;3151-3158.
24. Wu R.S., Kohn K.W., Bonner W.M. J. Biol. Chem. 256:1981;5916-5920.
25. Wilkinson K. FASEB J. 11:1997;1245-1256.
26. Hochstrasser M. Curr. Opin. Cell Biol. 7:1995;215-223.
27. Cai S.Y., Babbitt R.W., Marchesi V.T. Proc. Natl. Acad. Sci. USA. 96:1999;2828-2833.
28. Hershko A., Ciechanover A. Annu. Rev. Biochem. 67:1998;425-479.
29. Pickart C.M. Annu. Rev. Biochem. 70:2001;503-533.
30. Varshavsky A. Trends Biochem. Sci. 22:1997;383-387.
31. Barsoum J., Varshavsky A. J. Biol. Chem. 260:1985;7688-7697.
32. Levinger L., Varshavsky A. Proc. Natl. Acad. Sci. USA. 77:1980;3244-3248.
33. Levinger L., Varshavsky A. Cell. 28:1982;375-385.
34. Martinson H., True R., Burch J., Kunkel G. Proc. Natl. Acad. Sci. USA. 76:1979;1030-1034.
35. Moore S.C., Jason L., Ausio J. Biochem. Cell Biol. 80:2002;311-319.
36. Davies N., Lindsey G.G. Biochim. Biophys. Acta. 1218:1994;187-193.
37. Jason L.J., Moore S.C., Lewis J.D., Lindsey G., Ausio J. Bioessays. 24:2002;166-174.
38. Jason L.J., Moore S.C., Ausio J., Lindsey G. J. Biol. Chem. 276:2001;14597-14601.
39. Jenuwein T., Allis C.D. Science. 293:2001;1074-1080.
40. Briggs S.D., Xiao T., Sun Z.W., Caldwell J.A., Shabanowitz J., Hunt D.F., Allis C.D., Strahl B.D. Nature. 418:2002;498.
41. Sun Z.W., Allis C.D. Nature. 418:2002;104-108.
42. Ng H.H., Xu R.M., Zhang Y., Struhl K. J. Biol. Chem. 277:2002;34655-34657.
43. Dover J., Schneider J., Tawiah-Boateng M.A., Wood A., Dean K., Johnston M., Shilatifard A. J. Biol. Chem. 277:2002;28368-28371.
44. Jentsch S., McGrath J.P., Varshavsky A. Nature. 329:1987;131-134.
45. Sung P., Prakash S., Prakash L. Genes Dev. 2:1988;1476-1485.
46. Sullivan M.L., Vierstra R.D. Proc. Natl. Acad. Sci. USA. 86:1989;9861-9865.
47. Haas A.L., Reback P.B., Chau V. J. Biol. Chem. 266:1991;5104-5112.
48. Haas A.L., Bright P.M., Jackson V.E. J. Biol. Chem. 263:1988;13268-13275.
49. Baarends W.M., Hoogerbrugge J.W., Roest H.P., Ooms M., Vreeburg J., Hoeijmakers J.H., Grootegoed J.A. Dev. Biol. 207:1999;322-333.
50. Nickel B.E., Allis C.D., Davie J.R. Biochemistry. 28:1989;958-963.
51. Davie J.R., Lin R., Allis C.D. Biochem. Cell Biol. 69:1991;66-71.
52. Vassilev A.P., Rasmussen H.H., Christensen E.I., Nielsen S., Celis J.E. J. Cell Sci. 108:1995;1205-1215.
53. Wood A.et al. Mol. Cell. 11:2003;267-274.
54. Hwang W.W.et al. Mol. Cell. 11:2003;261-266.
55. Davie J., Murphy L. Biochem. Biophys. Res. Commun. 203:1994;344-350.
56. Davie J.R., Murphy L.C. Biochemistry. 29:1990;4752-4757.
57. Turner S.D., Ricci A.R., Petropoulos H., Genereaux J., Skerjanc I.S., Brandl C.J. Mol. Cell. Biol. 22:2002;4011-4019.
58. Recht J., Osley M.A. EMBO J. 18:1999;229-240.
59. Ohashi A., Gibson J., Gregor I., Schatz G. J. Biol. Chem. 257:1982;13042-13047.
60. Horvath A., Riezman H. Yeast. 10:1994;1305-1310.
61. Kuo M.H., Allis C.D. Methods. 19:1999;425-433.
62. Suka N., Suka Y., Carmen A.A., Wu J., Grunstein M. Mol. Cell. 8:2001;473-479.
63. Bonner W.M., West M.H., Stedman J.D. Eur. J. Biochem. 109:1980;17-23.
64. Lennox R., Cohen L. Abelson J., Simon M. Methods in Enzymology. vol. 170:1989;532-548 Academic Press, San Diego.
65. Olson M.O., Goldknopf I.L., Guetzow K.A., James G.T., Hawkins T.C., Mays-Rothberg C.J., Busch H. J. Biol. Chem. 251:1976;5901-5903.
66. Smith P.K., Krohn R.I., Hermanson G.T., Mallia A.K., Gartner F.H., Provenzano M.D., Fujimoto E.K., Goeke N.M., Olson B.J., Klenk D.C. Anal. Biochem. 150:1985;76-85.