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Volumn 124, Issue 3, 2006, Pages 475-485

Combining gene expression profiles and protein-protein interaction data to infer gene functions

Author keywords

Gene expression; Gene function prediction; Protein protein interaction; Simulated annealing

Indexed keywords

ALGORITHMS; DATA HANDLING; GENES; GENETIC ENGINEERING; PROBABILITY; SIMULATED ANNEALING;

EID: 33745497363     PISSN: 01681656     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2006.01.024     Document Type: Article
Times cited : (13)

References (26)
  • 2
    • 1442329655 scopus 로고    scopus 로고
    • Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network
    • Brun C., Chevenet F., Martin D., Wojcik J., Guenoche A., and Jacq B. Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network. Genome Biol. 5 (2003) R6
    • (2003) Genome Biol. , vol.5
    • Brun, C.1    Chevenet, F.2    Martin, D.3    Wojcik, J.4    Guenoche, A.5    Jacq, B.6
  • 3
    • 27144489164 scopus 로고    scopus 로고
    • A tutorial on support vector machines for pattern recognition
    • Burge C.J.C. A tutorial on support vector machines for pattern recognition. Data Min. Knowl. Discov. 2 (1998) 121-167
    • (1998) Data Min. Knowl. Discov. , vol.2 , pp. 121-167
    • Burge, C.J.C.1
  • 4
    • 13444283846 scopus 로고    scopus 로고
    • Global protein function annotation through mining genome-scale data in yeast Saccharomyces cerevisiae
    • Chen Y., and Xu D. Global protein function annotation through mining genome-scale data in yeast Saccharomyces cerevisiae. Nucleic Acids Res. 32 (2004) 6414-6424
    • (2004) Nucleic Acids Res. , vol.32 , pp. 6414-6424
    • Chen, Y.1    Xu, D.2
  • 5
    • 0025940629 scopus 로고
    • The two-hybrid system: a method to identify and clone genes for proteins that interact with a protein of interest
    • Chien C.T., Bartel P.L., Sternglanz R., and Fields S. The two-hybrid system: a method to identify and clone genes for proteins that interact with a protein of interest. Proc. Natl. Acad. Sci. U.S.A. 88 (1991) 9578-9582
    • (1991) Proc. Natl. Acad. Sci. U.S.A. , vol.88 , pp. 9578-9582
    • Chien, C.T.1    Bartel, P.L.2    Sternglanz, R.3    Fields, S.4
  • 9
    • 0035044077 scopus 로고    scopus 로고
    • Assessment of prediction accuracy of protein function from protein-protein interaction data
    • Hishigaki H., Nakai K., Ono T., Tanigami A., and Takagi T. Assessment of prediction accuracy of protein function from protein-protein interaction data. Yeast 18 (2001) 523-531
    • (2001) Yeast , vol.18 , pp. 523-531
    • Hishigaki, H.1    Nakai, K.2    Ono, T.3    Tanigami, A.4    Takagi, T.5
  • 12
    • 13844271482 scopus 로고    scopus 로고
    • Genome-scale gene function prediction using multiple sources of high-throughput data in yeast Saccharomyces cerevisiae
    • Joshi T., Chen Y., Becker J.M., Alexandrov N., and Xu D. Genome-scale gene function prediction using multiple sources of high-throughput data in yeast Saccharomyces cerevisiae. OMICS 8 (2004) 322-333
    • (2004) OMICS , vol.8 , pp. 322-333
    • Joshi, T.1    Chen, Y.2    Becker, J.M.3    Alexandrov, N.4    Xu, D.5
  • 13
    • 84960936322 scopus 로고    scopus 로고
    • Kuramochi, M., Karypis, G., 2001. Gene classification using expression profiles: a feasibility study. In: Proceedings of the 2nd IEEE International Symposium on Bioinformatics and Bioengineering. Bethesda, Maryland, USA.
  • 14
    • 0038781869 scopus 로고    scopus 로고
    • Predicting gene ontology biological process from temporal gene expression patterns
    • Lagreid A., Hvidsten T.R., Midelfart H., Komorowski J., and Sandvik A.K. Predicting gene ontology biological process from temporal gene expression patterns. Genome Res. 13 (2003) 965-979
    • (2003) Genome Res. , vol.13 , pp. 965-979
    • Lagreid, A.1    Hvidsten, T.R.2    Midelfart, H.3    Komorowski, J.4    Sandvik, A.K.5
  • 15
    • 1542271409 scopus 로고    scopus 로고
    • Predicting protein function from protein/protein interaction data: a probabilistic approach.
    • Letovsky S., and Kasif S. Predicting protein function from protein/protein interaction data: a probabilistic approach. Bioinformatics 19 Suppl. 1 (2003) i197-i204
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL. 1
    • Letovsky, S.1    Kasif, S.2
  • 18
    • 0031963203 scopus 로고    scopus 로고
    • DNA chips: state-of-the art
    • Ramsay G. DNA chips: state-of-the art. Nat. Biotechnol. 16 (1998) 40-44
    • (1998) Nat. Biotechnol. , vol.16 , pp. 40-44
    • Ramsay, G.1
  • 20
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena M., Shalon D., Davis R.W., and Brown P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270 (1995) 467-470
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 21
    • 0033669189 scopus 로고    scopus 로고
    • A network of protein-protein interactions in yeast
    • Schwikowski B., Uetz P., and Fields S. A network of protein-protein interactions in yeast. Nat. Biotechnol. 18 (2000) 1257-1261
    • (2000) Nat. Biotechnol. , vol.18 , pp. 1257-1261
    • Schwikowski, B.1    Uetz, P.2    Fields, S.3
  • 22
    • 0038492417 scopus 로고    scopus 로고
    • A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae)
    • Troyanskaya O.G., Dolinski K., Owen A.B., Altman R.B., and Botstein D. A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae). Proc. Natl. Acad. Sci. U.S.A. 100 (2003) 8348-8353
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 8348-8353
    • Troyanskaya, O.G.1    Dolinski, K.2    Owen, A.B.3    Altman, R.B.4    Botstein, D.5
  • 23
    • 0038699587 scopus 로고    scopus 로고
    • Global protein function prediction from protein-protein interaction networks
    • Vazquez A., Flammini A., Maritan A., and Vespignani A. Global protein function prediction from protein-protein interaction networks. Nat. Biotechnol. 21 (2003) 697-700
    • (2003) Nat. Biotechnol. , vol.21 , pp. 697-700
    • Vazquez, A.1    Flammini, A.2    Maritan, A.3    Vespignani, A.4
  • 25
    • 15244346245 scopus 로고    scopus 로고
    • Detecting differentially expressed genes by relative entropy
    • Yan X., Deng M., Fung W.K., and Qian M. Detecting differentially expressed genes by relative entropy. J. Theor. Biol. 234 (2005) 395-402
    • (2005) J. Theor. Biol. , vol.234 , pp. 395-402
    • Yan, X.1    Deng, M.2    Fung, W.K.3    Qian, M.4
  • 26
    • 0036790999 scopus 로고    scopus 로고
    • Transitive functional annotation by shortest-path analysis of gene expression data
    • Zhou X., Kao M.C., and Wong W.H. Transitive functional annotation by shortest-path analysis of gene expression data. Proc. Natl. Acad. Sci. U.S.A. 99 (2002) 12783-12788
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 12783-12788
    • Zhou, X.1    Kao, M.C.2    Wong, W.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.