메뉴 건너뛰기




Volumn 1, Issue 4, 2005, Pages 305-315

The use of chemical profiling for monitoring metabolic changes in artificial soil slurries caused by horizontal gene transfer

Author keywords

Acinetobacter ADP1; Fingerprint; FT IR; Horizontal gene transfer; Metabolic

Indexed keywords

ACINETOBACTER;

EID: 33745475224     PISSN: 15733882     EISSN: 15733890     Source Type: Journal    
DOI: 10.1007/s11306-005-0011-1     Document Type: Article
Times cited : (3)

References (45)
  • 2
    • 0028980725 scopus 로고
    • Interaction of a Genetically-Modified Pseudomonas-Fluorescens with the Soil-Feeding Earthworm Octolasion Cyaneum (Lumbricidae)
    • Clegg C.D., Anderson J.M., Lappinscott H.M., Vanelsas J.D., Jolly J.M. (1995). Interaction of a Genetically-Modified Pseudomonas-Fluorescens with the Soil-Feeding Earthworm Octolasion Cyaneum (Lumbricidae). Soil Biology & Biochemistry 27:1423-1429
    • (1995) Soil Biology & Biochemistry , vol.27 , pp. 1423-1429
    • Clegg, C.D.1    Anderson, J.M.2    Lappinscott, H.M.3    Vanelsas, J.D.4    Jolly, J.M.5
  • 4
    • 0030027502 scopus 로고    scopus 로고
    • Influence of earthworm activity on gene transfer from Pseudomonas fluorescens to indigenous soil bacteria
    • Daane L.L., Molina J.A.E., Berry E.C., Sadowsky M.J. (1996). Influence of earthworm activity on gene transfer from Pseudomonas fluorescens to indigenous soil bacteria. Applied and Environmental Microbiology 62:515-521
    • (1996) Applied and Environmental Microbiology , vol.62 , pp. 515-521
    • Daane, L.L.1    Molina, J.A.E.2    Berry, E.C.3    Sadowsky, M.J.4
  • 5
    • 0030934757 scopus 로고    scopus 로고
    • Plasmid transfer between spatially separated donor and recipient bacteria in earthworm-containing soil microcosms
    • Daane L.L., Molina J.A.E., Sadowsky M.J. (1997). Plasmid transfer between spatially separated donor and recipient bacteria in earthworm-containing soil microcosms. Applied and Environmental Microbiology 63:679-686
    • (1997) Applied and Environmental Microbiology , vol.63 , pp. 679-686
    • Daane, L.L.1    Molina, J.A.E.2    Sadowsky, M.J.3
  • 6
    • 0036259558 scopus 로고    scopus 로고
    • Impacts of fauna on an upland grassland soil as determined by micromorphological analysis
    • Davidson D.A., Bruneau P.M.C., Grieve I.C., Young I.M. (2002). Impacts of fauna on an upland grassland soil as determined by micromorphological analysis. Applied Soil Ecology 20:133-143
    • (2002) Applied Soil Ecology , vol.20 , pp. 133-143
    • Davidson, D.A.1    Bruneau, P.M.C.2    Grieve, I.C.3    Young, I.M.4
  • 7
    • 2542609897 scopus 로고    scopus 로고
    • Micromorphological assessment of the effect of liming on faunal excrement in an upland grassland soil
    • Davidson D.A., Bruneau P.M.C., Grieve I.C., Wilson C.A. (2004). Micromorphological assessment of the effect of liming on faunal excrement in an upland grassland soil. Applied Soil Ecology 26:169-177
    • (2004) Applied Soil Ecology , vol.26 , pp. 169-177
    • Davidson, D.A.1    Bruneau, P.M.C.2    Grieve, I.C.3    Wilson, C.A.4
  • 8
    • 0035916398 scopus 로고    scopus 로고
    • The natural transformation of the soil bacteria Pseudomonas stutzeri and Acinetobacter sp by transgenic plant DNA strictly depends on homologous sequences in the recipient cells
    • de Vries J., Meier P., Wackernagel W. (2001). The natural transformation of the soil bacteria Pseudomonas stutzeri and Acinetobacter sp by transgenic plant DNA strictly depends on homologous sequences in the recipient cells. Fems Microbiology Letters 195:211-215
    • (2001) Fems Microbiology Letters , vol.195 , pp. 211-215
    • de Vries, J.1    Meier, P.2    Wackernagel, W.3
  • 9
    • 0042530369 scopus 로고    scopus 로고
    • Spread of recombinant DNA by roots and pollen of transgenic potato plants, identified by highly specific biomonitoring using natural transformation of an Acinetobacter sp
    • de Vries J., Heine M., Harms K., Wackernagel W. (2003). Spread of recombinant DNA by roots and pollen of transgenic potato plants, identified by highly specific biomonitoring using natural transformation of an Acinetobacter sp. Applied and Environmental Microbiology 69:4455-4462
    • (2003) Applied and Environmental Microbiology , vol.69 , pp. 4455-4462
    • de Vries, J.1    Heine, M.2    Harms, K.3    Wackernagel, W.4
  • 10
    • 0037133327 scopus 로고    scopus 로고
    • Integration of foreign DNA during natural transformation of Acinetobacter sp by homology-facilitated illegitimate recombination
    • de Vries J., Wackernagel W. (2002). Integration of foreign DNA during natural transformation of Acinetobacter sp by homology-facilitated illegitimate recombination. Proceedings of the National Academy of Sciences of the United States of America 99:2094-2099
    • (2002) Proceedings of the National Academy of Sciences of the United States of America , vol.99 , pp. 2094-2099
    • de Vries, J.1    Wackernagel, W.2
  • 11
    • 0036269481 scopus 로고    scopus 로고
    • Rapid and quantitative detection of the microbial spoilage of meat by Fourier transform infrared spectroscopy and machine learning
    • Ellis D.I., Broadhurst D., Kell D.B., Rowland J.J., Goodacre R. (2002). Rapid and quantitative detection of the microbial spoilage of meat by Fourier transform infrared spectroscopy and machine learning. Applied and Environmental Microbiology 68:2822-2828
    • (2002) Applied and Environmental Microbiology , vol.68 , pp. 2822-2828
    • Ellis, D.I.1    Broadhurst, D.2    Kell, D.B.3    Rowland, J.J.4    Goodacre, R.5
  • 12
    • 0027976503 scopus 로고
    • Prra, a Putative Response Regulator Involved in Oxygen Regulation of Photosynthesis Gene-Expression in Rhodobacter-Sphaeroides
    • Eraso J.M., Kaplan S. (1994). Prra, a Putative Response Regulator Involved in Oxygen Regulation of Photosynthesis Gene-Expression in Rhodobacter-Sphaeroides. Journal of Bacteriology 176:32-43
    • (1994) Journal of Bacteriology , vol.176 , pp. 32-43
    • Eraso, J.M.1    Kaplan, S.2
  • 13
    • 0036195306 scopus 로고    scopus 로고
    • Molecular and culture-based analyses of prokaryotic communities from an agricultural soil and the burrows and casts of the earthworm Lumbricus rubellus
    • Furlong M.A., Singleton D.R., Coleman D.C., Whitman W.B. (2002). Molecular and culture-based analyses of prokaryotic communities from an agricultural soil and the burrows and casts of the earthworm Lumbricus rubellus. Applied and Environmental Microbiology 68:1265-1279
    • (2002) Applied and Environmental Microbiology , vol.68 , pp. 1265-1279
    • Furlong, M.A.1    Singleton, D.R.2    Coleman, D.C.3    Whitman, W.B.4
  • 14
    • 0031977979 scopus 로고    scopus 로고
    • Transformation of Acinetobacter sp. strain BD413 by transgenic sugar beet DNA
    • Gebhard F., Smalla K. (1998). Transformation of Acinetobacter sp. strain BD413 by transgenic sugar beet DNA. Applied and Environmental Microbiology 64:1550-1554
    • (1998) Applied and Environmental Microbiology , vol.64 , pp. 1550-1554
    • Gebhard, F.1    Smalla, K.2
  • 15
    • 0031781727 scopus 로고    scopus 로고
    • Rapid identification of urinary tract infection bacteria using hyperspectral whole-organism fingerprinting and artificial neural networks
    • Goodacre R., Timmins E.M., Burton R., Kaderbhai N., Woodward A.M., Kell D.B., Rooney P.J. (1998). Rapid identification of urinary tract infection bacteria using hyperspectral whole-organism fingerprinting and artificial neural networks. Microbiology-Uk 144:1157-1170
    • (1998) Microbiology-Uk , vol.144 , pp. 1157-1170
    • Goodacre, R.1    Timmins, E.M.2    Burton, R.3    Kaderbhai, N.4    Woodward, A.M.5    Kell, D.B.6    Rooney, P.J.7
  • 16
    • 0033970940 scopus 로고    scopus 로고
    • Detection of the dipicolinic acid biomarker in Bacillus spores using Curie-point pyrolysis mass spectrometry and fourier transform infrared spectroscopy
    • Goodacre R., Shann B., Gilbert R.J., Timmins E.M., McGovern A.C., Alsberg B.K., Kell D.B., Logan N.A. (2000). Detection of the dipicolinic acid biomarker in Bacillus spores using Curie-point pyrolysis mass spectrometry and fourier transform infrared spectroscopy. Analytical Chemistry 72:119-127
    • (2000) Analytical Chemistry , vol.72 , pp. 119-127
    • Goodacre, R.1    Shann, B.2    Gilbert, R.J.3    Timmins, E.M.4    McGovern, A.C.5    Alsberg, B.K.6    Kell, D.B.7    Logan, N.A.8
  • 17
    • 1642547099 scopus 로고    scopus 로고
    • UV-B radiation induced changes in litter quality affects earthworm growth and cast characteristics as determined by metabolic fingerprinting
    • Gwynn-Jones D., Huang W.E., Easton G., Goodacre R., Scullion J. (2003). UV-B radiation induced changes in litter quality affects earthworm growth and cast characteristics as determined by metabolic fingerprinting. Pedobiologia 47:784-787
    • (2003) Pedobiologia , vol.47 , pp. 784-787
    • Gwynn-Jones, D.1    Huang, W.E.2    Easton, G.3    Goodacre, R.4    Scullion, J.5
  • 18
    • 0030977550 scopus 로고    scopus 로고
    • Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal tar-contaminated field site
    • Herrick J.B., StuartKeil K.G., Ghiorse W.C., Madsen E.L. (1997). Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal tar-contaminated field site. Applied and Environmental Microbiology 63:2330-2337
    • (1997) Applied and Environmental Microbiology , vol.63 , pp. 2330-2337
    • Herrick, J.B.1    StuartKeil, K.G.2    Ghiorse, W.C.3    Madsen, E.L.4
  • 19
    • 0025675856 scopus 로고
    • High efficiency transformation of E. Coli with plasmids
    • Inoue H., Nojima H., Okayama H. (1990). High efficiency transformation of E. Coli with plasmids. Gene 96:23-28
    • (1990) Gene , vol.96 , pp. 23-28
    • Inoue, H.1    Nojima, H.2    Okayama, H.3
  • 20
    • 0346100346 scopus 로고    scopus 로고
    • Discrimniation of bacteria using surface-enhanced Raman spectroscopy
    • Jarvis R.M., Goodacre R. (2004). Discrimniation of bacteria using surface-enhanced Raman spectroscopy. Analytical Chemistry 76:40-47
    • (2004) Analytical Chemistry , vol.76 , pp. 40-47
    • Jarvis, R.M.1    Goodacre, R.2
  • 22
    • 0032783243 scopus 로고    scopus 로고
    • areABC genes determine the catabolism of aryl esters in Acinetobacter sp strain ADP1
    • Jones R.M., Collier L.S., Neidle E.L., Williams P.A. (1999). areABC genes determine the catabolism of aryl esters in Acinetobacter sp strain ADP1. Journal of Bacteriology 181:4568-4575
    • (1999) Journal of Bacteriology , vol.181 , pp. 4568-4575
    • Jones, R.M.1    Collier, L.S.2    Neidle, E.L.3    Williams, P.A.4
  • 23
    • 0034019270 scopus 로고    scopus 로고
    • sal genes determining the catabolism of salicylate esters are part of a supraoperonic cluster of catabolic genes in Acinetobacter sp strain ADP1
    • Jones R.M., Pagmantidis V., Williams P.A. (2000). sal genes determining the catabolism of salicylate esters are part of a supraoperonic cluster of catabolic genes in Acinetobacter sp strain ADP1. Journal of Bacteriology 182:2018-2025
    • (2000) Journal of Bacteriology , vol.182 , pp. 2018-2025
    • Jones, R.M.1    Pagmantidis, V.2    Williams, P.A.3
  • 24
    • 0141704512 scopus 로고    scopus 로고
    • Mutational analysis of the critical bases involved in activation of the AreR-regulated sigma(54)-dependent promoter in Acinetobacter sp strain ADP1
    • Jones R.M., Williams P.A. (2003). Mutational analysis of the critical bases involved in activation of the AreR-regulated sigma(54)-dependent promoter in Acinetobacter sp strain ADP1. Applied and Environmental Microbiology 69:5627-5635
    • (2003) Applied and Environmental Microbiology , vol.69 , pp. 5627-5635
    • Jones, R.M.1    Williams, P.A.2
  • 25
    • 0014503154 scopus 로고
    • Transformation of Acinetobacter calcoaceticus(Bacterium anitratum)
    • Juni E., Janik A. (1969). Transformation of Acinetobacter calcoaceticus(Bacterium anitratum). Journal of Bacteriology 98:281-288
    • (1969) Journal of Bacteriology , vol.98 , pp. 281-288
    • Juni, E.1    Janik, A.2
  • 26
    • 0028948028 scopus 로고
    • Comparative-Assessment of the Aerobic and Anaerobic Microfloras of Earthworm Guts and Forest Soils
    • Karsten G.R., Drake H.L. (1995). Comparative-Assessment of the Aerobic and Anaerobic Microfloras of Earthworm Guts and Forest Soils. Applied and Environmental Microbiology 61:1039-1044
    • (1995) Applied and Environmental Microbiology , vol.61 , pp. 1039-1044
    • Karsten, G.R.1    Drake, H.L.2
  • 27
    • 0036307494 scopus 로고    scopus 로고
    • In situ transfer of antibiotic resistance genes from transgenic (transplastomic) tobacco plants to bacteria
    • Kay E., Vogel T.M., Bertolla F., Nalin R., Simonet P. (2002). In situ transfer of antibiotic resistance genes from transgenic (transplastomic) tobacco plants to bacteria. Applied and Environmental Microbiology 68:3345-3351
    • (2002) Applied and Environmental Microbiology , vol.68 , pp. 3345-3351
    • Kay, E.1    Vogel, T.M.2    Bertolla, F.3    Nalin, R.4    Simonet, P.5
  • 28
    • 0024787144 scopus 로고
    • Construction of a Lacz-Kanamycin-Resistance Cassette, Useful for Site-Directed Mutagenesis and as a Promoter Probe
    • Kokotek W., Lotz W. (1989). Construction of a Lacz-Kanamycin-Resistance Cassette, Useful for Site-Directed Mutagenesis and as a Promoter Probe. Gene 84:467-471
    • (1989) Gene , vol.84 , pp. 467-471
    • Kokotek, W.1    Lotz, W.2
  • 29
    • 0028136885 scopus 로고
    • Bacterial Gene-Transfer By Natural Genetic-Transformation in the Environment
    • Lorenz M.G., Wackernagel W. (1994). Bacterial Gene-Transfer By Natural Genetic-Transformation in the Environment. Microbiological Reviews 58:563-602
    • (1994) Microbiological Reviews , vol.58 , pp. 563-602
    • Lorenz, M.G.1    Wackernagel, W.2
  • 32
    • 0035325462 scopus 로고    scopus 로고
    • FT-infrared and FT-Raman spectroscopy in biomedical research
    • Naumann D. (2001). FT-infrared and FT-Raman spectroscopy in biomedical research. Applied Spectroscopy Reviews 36:239-298
    • (2001) Applied Spectroscopy Reviews , vol.36 , pp. 239-298
    • Naumann, D.1
  • 33
    • 0031687533 scopus 로고    scopus 로고
    • Horizontal gene transfer from transgenic plants to terrestrial bacteria - A rare event?
    • Nielsen K.M., Bones A.M., Smalla K., van Elsas J.D. (1998). Horizontal gene transfer from transgenic plants to terrestrial bacteria - a rare event? Fems Microbiology Reviews 22:79-103
    • (1998) Fems Microbiology Reviews , vol.22 , pp. 79-103
    • Nielsen, K.M.1    Bones, A.M.2    Smalla, K.3    van Elsas, J.D.4
  • 34
    • 0033989223 scopus 로고    scopus 로고
    • Natural transformation of Acinetobacter sp strain BD413 with cell lysates of Acinetobacter sp., Pseudomonas fluorescens, and Burkholderia cepacia in soil microcosms
    • Nielsen K.M., Smalla K., van Elsas J.D. (2000). Natural transformation of Acinetobacter sp strain BD413 with cell lysates of Acinetobacter sp., Pseudomonas fluorescens, and Burkholderia cepacia in soil microcosms. Applied and Environmental Microbiology 66:206-212
    • (2000) Applied and Environmental Microbiology , vol.66 , pp. 206-212
    • Nielsen, K.M.1    Smalla, K.2    van Elsas, J.D.3
  • 35
    • 0034059931 scopus 로고    scopus 로고
    • Transformation of Acinetobacter sp strain BD413(pFG4 Delta nptII) with transgenic plant DNA in soil microcosms and effects of kanamycin on selection of transformants
    • Nielsen K.M., van Elsas J.D., Smalla K. (2000). Transformation of Acinetobacter sp strain BD413(pFG4 Delta nptII) with transgenic plant DNA in soil microcosms and effects of kanamycin on selection of transformants. Applied and Environmental Microbiology 66:1237-1242
    • (2000) Applied and Environmental Microbiology , vol.66 , pp. 1237-1242
    • Nielsen, K.M.1    van Elsas, J.D.2    Smalla, K.3
  • 36
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman H., Lawrence J.G., Groisman E.A. (2000). Lateral gene transfer and the nature of bacterial innovation. Nature 405:299-304
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 38
    • 0028045972 scopus 로고
    • Physiological Regulation of Competence Induction For Natural Transformation in Acinetobacter-Calcoaceticus
    • Palmen R., Buijsman P., Hellingwerf K.J. (1994). Physiological Regulation of Competence Induction For Natural Transformation in Acinetobacter-Calcoaceticus. Archives of Microbiology 162:344-351
    • (1994) Archives of Microbiology , vol.162 , pp. 344-351
    • Palmen, R.1    Buijsman, P.2    Hellingwerf, K.J.3
  • 41
    • 0036132828 scopus 로고    scopus 로고
    • Automated image analysis and in situ hybridization as tools to study bacterial populations in food resources, gut and cast of Lumbricus terrestris L
    • Schonholzer F., Hahn D., Zarda B., Zeyer J. (2002). Automated image analysis and in situ hybridization as tools to study bacterial populations in food resources, gut and cast of Lumbricus terrestris L. Journal of Microbiological Methods 48:53-68
    • (2002) Journal of Microbiological Methods , vol.48 , pp. 53-68
    • Schonholzer, F.1    Hahn, D.2    Zarda, B.3    Zeyer, J.4
  • 44
    • 0242659175 scopus 로고    scopus 로고
    • Identification of uncultured bacteria tightly associated with the intestine of the earthworm Lumbricus rubellus (Lumbricidae; Oligochaeta)
    • Singleton D.R., Hendrix P.F., Coleman D.C., Whitman W.B. (2003). Identification of uncultured bacteria tightly associated with the intestine of the earthworm Lumbricus rubellus (Lumbricidae; Oligochaeta). Soil Biology & Biochemistry 35:1547-1555
    • (2003) Soil Biology & Biochemistry , vol.35 , pp. 1547-1555
    • Singleton, D.R.1    Hendrix, P.F.2    Coleman, D.C.3    Whitman, W.B.4
  • 45
    • 0031964328 scopus 로고    scopus 로고
    • Rapid differentiation of closely related Candida species and strains by pyrolysis mass spectrometry and Fourier transform- infrared spectroscopy
    • Timmins E.M., Howell S.A., Alsberg B.K., Noble W.C., Goodacre R. (1998). Rapid differentiation of closely related Candida species and strains by pyrolysis mass spectrometry and Fourier transform- infrared spectroscopy. Journal of Clinical Microbiology 36:367-374
    • (1998) Journal of Clinical Microbiology , vol.36 , pp. 367-374
    • Timmins, E.M.1    Howell, S.A.2    Alsberg, B.K.3    Noble, W.C.4    Goodacre, R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.