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Volumn 60, Issue 5, 2006, Pages 1218-1227

In vivo drafting of single-chain antibodies for regulatory duty on the σ54-promoter Pu of the TOL plasmid

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; AMPICILLIN; ANTIBIOTIC AGENT; CHLORAMPHENICOL; DNA; MESSENGER RNA; POLYPEPTIDE; REGULATOR PROTEIN; SINGLE CHAIN FRAGMENT VARIABLE ANTIBODY;

EID: 33745233250     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2006.05183.x     Document Type: Article
Times cited : (4)

References (38)
  • 1
    • 0036898867 scopus 로고    scopus 로고
    • Modular design of artificial transcription factors
    • Ansari A.Z. Mapp A.K. ( 2002) Modular design of artificial transcription factors. Curr Opin Chem Biol 6 : 765 772.
    • (2002) Curr Opin Chem Biol , vol.6 , pp. 765-772
    • Ansari, A.Z.1    Mapp, A.K.2
  • 2
    • 0032863714 scopus 로고    scopus 로고
    • Identification of the Pseudomonas stutzeri OX1 toluene-o-xylene monooxygenase regulatory gene (touR) and of its cognate promoter
    • Arenghi F.L. Pinti M. Galli E. Barbieri P. ( 1999) Identification of the Pseudomonas stutzeri OX1 toluene-o-xylene monooxygenase regulatory gene (touR) and of its cognate promoter. Appl Environ Microbiol 65 : 4057 4063.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4057-4063
    • Arenghi, F.L.1    Pinti, M.2    Galli, E.3    Barbieri, P.4
  • 3
    • 0034981053 scopus 로고    scopus 로고
    • New insights into the activation of o-xylene biodegradation in Pseudomonas stutzeri OX1 by pathway substrates
    • Arenghi F.L. Barbieri P. Bertoni G. de Lorenzo V. ( 2001) New insights into the activation of o-xylene biodegradation in Pseudomonas stutzeri OX1 by pathway substrates. EMBO Rep 2 : 409 414.
    • (2001) EMBO Rep , vol.2 , pp. 409-414
    • Arenghi, F.L.1    Barbieri, P.2    Bertoni, G.3    De Lorenzo, V.4
  • 4
    • 0033598777 scopus 로고    scopus 로고
    • Efficient folding of proteins with multiple disulfide bonds in the Escherichia coli cytoplasm
    • Bessette P.H. Aslund F. Beckwith J. Georgiou G. ( 1999) Efficient folding of proteins with multiple disulfide bonds in the Escherichia coli cytoplasm. Proc Natl Acad Sci USA 96 : 13703 13708.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 13703-13708
    • Bessette, P.H.1    Aslund, F.2    Beckwith, J.3    Georgiou, G.4
  • 5
    • 0034967623 scopus 로고    scopus 로고
    • Transcriptional control of the GAL/MEL regulon of yeast Saccharomyces cerevisiae: Mechanism of galactose-mediated signal transduction
    • Bhat P.J. Murthy T.V. ( 2001) Transcriptional control of the GAL/MEL regulon of yeast Saccharomyces cerevisiae: mechanism of galactose-mediated signal transduction. Mol Microbiol 40 : 1059 1066.
    • (2001) Mol Microbiol , vol.40 , pp. 1059-1066
    • Bhat, P.J.1    Murthy, T.V.2
  • 6
    • 13444302680 scopus 로고    scopus 로고
    • Promoters in the environment: Transcriptional regulation in its natural context
    • Cases I. de Lorenzo V. ( 2005) Promoters in the environment: transcriptional regulation in its natural context. Nat Rev Microbiol 3 : 105 118.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 105-118
    • Cases, I.1    De Lorenzo, V.2
  • 7
    • 0035253745 scopus 로고    scopus 로고
    • Rational design of a bacterial transcriptional cascade for amplifying gene expression capacity
    • Cebolla A. Sousa C. de Lorenzo V. ( 2001) Rational design of a bacterial transcriptional cascade for amplifying gene expression capacity. Nucleic Acids Res 29 : 759 766.
    • (2001) Nucleic Acids Res , vol.29 , pp. 759-766
    • Cebolla, A.1    Sousa, C.2    De Lorenzo, V.3
  • 8
    • 0036293607 scopus 로고    scopus 로고
    • Mechanism of action of the Escherichia coli phage shock protein PspA in repression of the AAA family transcription factor PspF
    • Elderkin S. Jones S. Schumacher J. Studholme D. Buck M. ( 2002) Mechanism of action of the Escherichia coli phage shock protein PspA in repression of the AAA family transcription factor PspF. J Mol Biol 320 : 23 37.
    • (2002) J Mol Biol , vol.320 , pp. 23-37
    • Elderkin, S.1    Jones, S.2    Schumacher, J.3    Studholme, D.4    Buck, M.5
  • 9
    • 0029063837 scopus 로고
    • Activation of the transcriptional regulator XylR of Pseudomonas putida by release of repression between functional domains
    • Fernandez S. de Lorenzo V. Perez-Martin J. ( 1995) Activation of the transcriptional regulator XylR of Pseudomonas putida by release of repression between functional domains. Mol Microbiol 16 : 205 213.
    • (1995) Mol Microbiol , vol.16 , pp. 205-213
    • Fernandez, S.1    De Lorenzo, V.2    Perez-Martin, J.3
  • 10
    • 0033760702 scopus 로고    scopus 로고
    • Specific secretion of active single-chain Fv antibodies into the supernatants of Escherichia coli cultures by use of the hemolysin system
    • Fernandez L.A. Sola I. Enjuanes L. de Lorenzo V. ( 2000) Specific secretion of active single-chain Fv antibodies into the supernatants of Escherichia coli cultures by use of the hemolysin system. Appl Environ Microbiol 66 : 5024 5029.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5024-5029
    • Fernandez, L.A.1    Sola, I.2    Enjuanes, L.3    De Lorenzo, V.4
  • 11
    • 0034821240 scopus 로고    scopus 로고
    • Monitoring intracellular levels of XylR in Pseudomonas putida with a single-chain antibody specific for aromatic-responsive enhancer-binding proteins
    • Fraile S. Roncal F. Fernandez L.A. de Lorenzo V. ( 2001) Monitoring intracellular levels of XylR in Pseudomonas putida with a single-chain antibody specific for aromatic-responsive enhancer-binding proteins. J Bacteriol 183 : 5571 5579.
    • (2001) J Bacteriol , vol.183 , pp. 5571-5579
    • Fraile, S.1    Roncal, F.2    Fernandez, L.A.3    De Lorenzo, V.4
  • 12
    • 31944447797 scopus 로고    scopus 로고
    • Transcriptional regulators à la carte: Engineering new effector specificities in bacterial regulatory proteins
    • Galvao T.C. de Lorenzo V. ( 2005) Transcriptional regulators à la carte: engineering new effector specificities in bacterial regulatory proteins. Curr Opin Biotechnol 17 : 34 42.
    • (2005) Curr Opin Biotechnol , vol.17 , pp. 34-42
    • Galvao, T.C.1    De Lorenzo, V.2
  • 13
    • 0033754121 scopus 로고    scopus 로고
    • Visualization of DNA-protein intermediates during activation of the Pu promoter of the TOL plasmid of Pseudomonas putida
    • Garmendia J. de Lorenzo V. ( 2000) Visualization of DNA-protein intermediates during activation of the Pu promoter of the TOL plasmid of Pseudomonas putida. Microbiology 146 : 2555 2563.
    • (2000) Microbiology , vol.146 , pp. 2555-2563
    • Garmendia, J.1    De Lorenzo, V.2
  • 14
    • 0035542726 scopus 로고    scopus 로고
    • À la carte transcriptional regulators: Unlocking responses of the prokaryotic enhancer-binding protein XylR to non-natural effectors
    • Garmendia J. Devos D. Valencia A. de Lorenzo V. ( 2001) À la carte transcriptional regulators: unlocking responses of the prokaryotic enhancer-binding protein XylR to non-natural effectors. Mol Microbiol 42 : 47 59.
    • (2001) Mol Microbiol , vol.42 , pp. 47-59
    • Garmendia, J.1    Devos, D.2    Valencia, A.3    De Lorenzo, V.4
  • 15
    • 0036933239 scopus 로고    scopus 로고
    • Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida
    • Greated A. Lambertsen L. Williams P.A. Thomas C.M. ( 2002) Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida. Environ Microbiol 4 : 856 871.
    • (2002) Environ Microbiol , vol.4 , pp. 856-871
    • Greated, A.1    Lambertsen, L.2    Williams, P.A.3    Thomas, C.M.4
  • 16
    • 0037119945 scopus 로고    scopus 로고
    • The disulfide bond isomerase DsbC is activated by an immunoglobulin-fold thiol oxidoreductase: Crystal structure of the DsbC-DsbDalpha complex
    • Haebel P.W. Goldstone D. Katzen F. Beckwith J. Metcalf P. ( 2002) The disulfide bond isomerase DsbC is activated by an immunoglobulin-fold thiol oxidoreductase: crystal structure of the DsbC-DsbDalpha complex. EMBO J 21 : 4774 4784.
    • (2002) EMBO J , vol.21 , pp. 4774-4784
    • Haebel, P.W.1    Goldstone, D.2    Katzen, F.3    Beckwith, J.4    Metcalf, P.5
  • 17
    • 0034744182 scopus 로고    scopus 로고
    • S-Gal: An autoclavable dye for color selection of cloned DNA inserts
    • Heuermann K. Cosgrove J. ( 2001) S-Gal: an autoclavable dye for color selection of cloned DNA inserts. Biotechniques 30 : 1142 1147.
    • (2001) Biotechniques , vol.30 , pp. 1142-1147
    • Heuermann, K.1    Cosgrove, J.2
  • 18
    • 0036667741 scopus 로고    scopus 로고
    • Crystallisation of membrane proteins mediated by antibody fragments
    • Hunte C. Michel H. ( 2002) Crystallisation of membrane proteins mediated by antibody fragments. Curr Opin Struct Biol 12 : 503 508.
    • (2002) Curr Opin Struct Biol , vol.12 , pp. 503-508
    • Hunte, C.1    Michel, H.2
  • 19
    • 0035061225 scopus 로고    scopus 로고
    • Design of novel zinc finger proteins: Towards artificial control of specific gene expression
    • Imanishi M. Hori Y. Nagaoka M. Sugiura Y. ( 2001) Design of novel zinc finger proteins: towards artificial control of specific gene expression. Eur J Pharm Sci 13 : 91 97.
    • (2001) Eur J Pharm Sci , vol.13 , pp. 91-97
    • Imanishi, M.1    Hori, Y.2    Nagaoka, M.3    Sugiura, Y.4
  • 20
    • 0036296338 scopus 로고    scopus 로고
    • Production of functional single-chain Fv antibodies in the cytoplasm of Escherichia coli
    • Jurado P. Ritz D. Beckwith J. de Lorenzo V. Fernandez L.A. ( 2002) Production of functional single-chain Fv antibodies in the cytoplasm of Escherichia coli. J Mol Biol 320 : 1 10.
    • (2002) J Mol Biol , vol.320 , pp. 1-10
    • Jurado, P.1    Ritz, D.2    Beckwith, J.3    De Lorenzo, V.4    Fernandez, L.A.5
  • 21
    • 0037853321 scopus 로고    scopus 로고
    • Sigma 54 levels and physiological control of the Pseudomonas putida Pu promoter
    • Jurado P. Fernandez L.A. de Lorenzo V. ( 2003) Sigma 54 levels and physiological control of the Pseudomonas putida Pu promoter. J Bacteriol 185 : 3379 3383.
    • (2003) J Bacteriol , vol.185 , pp. 3379-3383
    • Jurado, P.1    Fernandez, L.A.2    De Lorenzo, V.3
  • 22
    • 33644759558 scopus 로고    scopus 로고
    • Thioredoxin fusions increase folding of single chain Fv antibodies in the cytoplasm of Escherichia coli: Evidence that chaperone activity is the prime effect of thioredoxin
    • Jurado P. de Lorenzo V. Fernandez L.A. ( 2006) Thioredoxin fusions increase folding of single chain Fv antibodies in the cytoplasm of Escherichia coli: evidence that chaperone activity is the prime effect of thioredoxin. J Mol Biol 357 : 49 61.
    • (2006) J Mol Biol , vol.357 , pp. 49-61
    • Jurado, P.1    De Lorenzo, V.2    Fernandez, L.A.3
  • 23
    • 33344463396 scopus 로고    scopus 로고
    • Direct selection of antibodies from complex libraries with the protein fragment complementation assay
    • Koch H. Grafe N. Schiess R. Pluckthun A. ( 2006) Direct selection of antibodies from complex libraries with the protein fragment complementation assay. J Mol Biol 357 : 427 441.
    • (2006) J Mol Biol , vol.357 , pp. 427-441
    • Koch, H.1    Grafe, N.2    Schiess, R.3    Pluckthun, A.4
  • 25
    • 0025797356 scopus 로고
    • An upstream XylR- and IHF-induced nucleoprotein complex regulates the sigma 54-dependent Pu promoter of TOL plasmid
    • de Lorenzo V. Herrero M. Metzke M. Timmis K.N. ( 1991) An upstream XylR- and IHF-induced nucleoprotein complex regulates the sigma 54-dependent Pu promoter of TOL plasmid. EMBO J 10 : 1159 1167.
    • (1991) EMBO J , vol.10 , pp. 1159-1167
    • De Lorenzo, V.1    Herrero, M.2    Metzke, M.3    Timmis, K.N.4
  • 26
    • 0003785155 scopus 로고
    • Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
    • Miller J.H. ( 1972) Experiments in Molecular Genetics. Cold Spring Harbor, NY : Cold Spring Harbor Laboratory Press.
    • (1972) Experiments in Molecular Genetics.
    • Miller, J.H.1
  • 27
    • 0029919623 scopus 로고    scopus 로고
    • In vitro activities of an N-terminal truncated form of XylR, a sigma 54-dependent transcriptional activator of Pseudomas putida
    • Perez-Martin J. de Lorenzo V. ( 1996a) In vitro activities of an N-terminal truncated form of XylR, a sigma 54-dependent transcriptional activator of Pseudomas putida. J Mol Biol 258 : 575 587.
    • (1996) J Mol Biol , vol.258 , pp. 575-587
    • Perez-Martin, J.1    De Lorenzo, V.2
  • 28
    • 0030602821 scopus 로고    scopus 로고
    • ATP binding to the sigma 54-dependent activator XylR triggers a protein multimerization cycle catalyzed by UAS DNA
    • Perez-Martin J. de Lorenzo V. ( 1996b) ATP binding to the sigma 54-dependent activator XylR triggers a protein multimerization cycle catalyzed by UAS DNA. Cell 86 : 331 339.
    • (1996) Cell , vol.86 , pp. 331-339
    • Perez-Martin, J.1    De Lorenzo, V.2
  • 29
    • 0030860391 scopus 로고    scopus 로고
    • Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators
    • Ramos J.L. Marques S. Timmis K.N. ( 1997) Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators. Annu Rev Microbiol 51 : 341 373.
    • (1997) Annu Rev Microbiol , vol.51 , pp. 341-373
    • Ramos, J.L.1    Marques, S.2    Timmis, K.N.3
  • 30
    • 1542319979 scopus 로고    scopus 로고
    • Novel physiological modulation of the Pu promoter of TOL plasmid: Negative regulatory role of the TurA protein of Pseudomonas putida in the response to suboptimal growth temperatures
    • Rescalli E. Saini S. Bartocci C. Rychlewski L. de Lorenzo V. Bertoni G. ( 2004) Novel physiological modulation of the Pu promoter of TOL plasmid: negative regulatory role of the TurA protein of Pseudomonas putida in the response to suboptimal growth temperatures. J Biol Chem 279 : 7777 7784.
    • (2004) J Biol Chem , vol.279 , pp. 7777-7784
    • Rescalli, E.1    Saini, S.2    Bartocci, C.3    Rychlewski, L.4    De Lorenzo, V.5    Bertoni, G.6
  • 32
    • 0037062573 scopus 로고    scopus 로고
    • A highly potent artificial transcription factor
    • Stanojevic D. Young R.A. ( 2002) A highly potent artificial transcription factor. Biochemistry 41 : 7209 7216.
    • (2002) Biochemistry , vol.41 , pp. 7209-7216
    • Stanojevic, D.1    Young, R.A.2
  • 33
    • 0032189925 scopus 로고    scopus 로고
    • Disulfide bond formation in the Escherichia coli cytoplasm: An in vivo role reversal for the thioredoxins
    • Stewart E.J. Aslund F. Beckwith J. ( 1998) Disulfide bond formation in the Escherichia coli cytoplasm: an in vivo role reversal for the thioredoxins. EMBO J 17 : 5543 5550.
    • (1998) EMBO J , vol.17 , pp. 5543-5550
    • Stewart, E.J.1    Aslund, F.2    Beckwith, J.3
  • 34
    • 0037332383 scopus 로고    scopus 로고
    • Domain architectures of sigma 54-dependent transcriptional activators
    • Studholme D.J. Dixon R. ( 2003) Domain architectures of sigma 54-dependent transcriptional activators. J Bacteriol 185 : 1757 1767.
    • (2003) J Bacteriol , vol.185 , pp. 1757-1767
    • Studholme, D.J.1    Dixon, R.2
  • 35
    • 0345099568 scopus 로고    scopus 로고
    • Transient XylR binding to the UAS of the Pseudomonas putida sigma 54 promoter Pu revealed with high intensity UV footprinting in vivo
    • Valls M. de Lorenzo V. ( 2003) Transient XylR binding to the UAS of the Pseudomonas putida sigma 54 promoter Pu revealed with high intensity UV footprinting in vivo. Nucleic Acids Res 31 : 6926 6934.
    • (2003) Nucleic Acids Res , vol.31 , pp. 6926-6934
    • Valls, M.1    De Lorenzo, V.2
  • 36
    • 4143109060 scopus 로고    scopus 로고
    • The intracellular antibody capture technology: Towards the high-throughput selection of functional intracellular antibodies for target validation
    • Visintin M. Quondam M. Cattaneo A. ( 2004) The intracellular antibody capture technology: towards the high-throughput selection of functional intracellular antibodies for target validation. Methods 34 : 200 214.
    • (2004) Methods , vol.34 , pp. 200-214
    • Visintin, M.1    Quondam, M.2    Cattaneo, A.3
  • 37
    • 0038423087 scopus 로고    scopus 로고
    • Correlation between in vitro stability and in vivo performance of anti-GCN4 intrabodies as cytoplasmic inhibitors
    • Wörn A. Auf der Maur A. Escher D. Honegger A. Barberis A. Plückthun A. ( 2000) Correlation between in vitro stability and in vivo performance of anti-GCN4 intrabodies as cytoplasmic inhibitors. J Biol Chem 275 : 2795 2803.
    • (2000) J Biol Chem , vol.275 , pp. 2795-2803
    • Wörn, A.1    Auf Der Maur, A.2    Escher, D.3    Honegger, A.4    Barberis, A.5    Plückthun, A.6
  • 38
    • 0035066617 scopus 로고    scopus 로고
    • Transcriptional regulation at a distance in bacteria
    • Xu H. Hoover T.R. ( 2001) Transcriptional regulation at a distance in bacteria. Curr Opin Microbiol 4 : 138 144.
    • (2001) Curr Opin Microbiol , vol.4 , pp. 138-144
    • Xu, H.1    Hoover, T.R.2


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