-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., T. L. Madden, A. A. Schäffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0023404898
-
Isolation of a Pseudomonas stutzeri strain that degrades o-xylene
-
Baggi, G., P. Barbieri, E. Galli, and S. Tollari. 1987. Isolation of a Pseudomonas stutzeri strain that degrades o-xylene. Appl. Environ. Microbiol. 53: 2129-2132.
-
(1987)
Appl. Environ. Microbiol.
, vol.53
, pp. 2129-2132
-
-
Baggi, G.1
Barbieri, P.2
Galli, E.3
Tollari, S.4
-
3
-
-
0029783360
-
Cloning of the genes for and characterization of the early stages of toluene and o-xylene catabolism in Pseudomonas stutzeri OX1
-
Bertoni, G., F. Bolognese, E. Galli, and P. Barbieri. 1996. Cloning of the genes for and characterization of the early stages of toluene and o-xylene catabolism in Pseudomonas stutzeri OX1. Appl. Environ. Microbiol. 62:3704-3711.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 3704-3711
-
-
Bertoni, G.1
Bolognese, F.2
Galli, E.3
Barbieri, P.4
-
4
-
-
0031684004
-
Analysis of the gene cluster encoding toluene/o-xylene monooxygenase from Pseudomonas stutzeri OX1
-
Bertoni, G., M. Martino, E. Galli, and P. Barbieri. 1998. Analysis of the gene cluster encoding toluene/o-xylene monooxygenase from Pseudomonas stutzeri OX1. Appl. Environ. Microbiol. 64:3626-3632.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3626-3632
-
-
Bertoni, G.1
Martino, M.2
Galli, E.3
Barbieri, P.4
-
5
-
-
0029858051
-
Cascade regulation of the toluene-3-monooxygenase operon (tbuA1UBVA2C) of Burkholderia pickettii PKO1: Role of the tbuA1 promoter (PtbuA1) in the expression of its cognate activator, TbuT
-
Byrne, A. M., and R. H. Olsen. 1996. Cascade regulation of the toluene-3-monooxygenase operon (tbuA1UBVA2C) of Burkholderia pickettii PKO1: role of the tbuA1 promoter (PtbuA1) in the expression of its cognate activator, TbuT. J. Bacteriol. 178:6327-6337.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 6327-6337
-
-
Byrne, A.M.1
Olsen, R.H.2
-
6
-
-
0028799572
-
Sequence analysis of the gene cluster encoding toluene-3-monooxygenase from Pseudomonas pickettii PKO1
-
Byrne, A. M., J. J. Kukor, and R. H. Olsen. 1995. Sequence analysis of the gene cluster encoding toluene-3-monooxygenase from Pseudomonas pickettii PKO1. Gene 154:65-70.
-
(1995)
Gene
, vol.154
, pp. 65-70
-
-
Byrne, A.M.1
Kukor, J.J.2
Olsen, R.H.3
-
7
-
-
0026003072
-
Control site location and transcriptional regulation in Escherichia coli
-
Collado-Vides, J., B. Magasanik, and J. D. Gralla. 1991. Control site location and transcriptional regulation in Escherichia coli. Microbiol. Rev. 55: 371-394.
-
(1991)
Microbiol. Rev.
, vol.55
, pp. 371-394
-
-
Collado-Vides, J.1
Magasanik, B.2
Gralla, J.D.3
-
8
-
-
0028244041
-
Genetic evidence for activation of the positive transcriptional regulator Xy1R, a member of the NtrC family of regulators, by effector binding
-
Delgado, A., and J. L. Ramos. 1994. Genetic evidence for activation of the positive transcriptional regulator Xy1R, a member of the NtrC family of regulators, by effector binding. J. Biol. Chem. 269:8059-8062.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 8059-8062
-
-
Delgado, A.1
Ramos, J.L.2
-
9
-
-
0029881189
-
Regulatory noise in prokaryotic promoters: How bacteria learn to respond to novel environmental signals
-
De Lorenzo, V., and J. Pérez-Martin. 1996. Regulatory noise in prokaryotic promoters: how bacteria learn to respond to novel environmental signals. Mol. Microbiol. 19:1177-1184.
-
(1996)
Mol. Microbiol.
, vol.19
, pp. 1177-1184
-
-
De Lorenzo, V.1
Pérez-Martin, J.2
-
10
-
-
0021760092
-
A comprehensive set of sequence analysis programs for the VAX
-
Devereux, J., P. Haeberly, and O. Smithies. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387-395.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 387-395
-
-
Devereux, J.1
Haeberly, P.2
Smithies, O.3
-
11
-
-
0023948010
-
High efficiency transformation of E. coli by high voltage electroporation
-
Dower, W. J., J. F. Miller, and C. W. Ragsdale. 1988. High efficiency transformation of E. coli by high voltage electroporation. Nucleic Acids Res. 16:6125-6145.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 6125-6145
-
-
Dower, W.J.1
Miller, J.F.2
Ragsdale, C.W.3
-
12
-
-
0028038233
-
Cross-regulation by Xy1R and DmpR activators of Pseudomonas putida suggests that transcriptional control of biodegradative operons evolves independently of catabolic genes
-
Fernández, S., V. Shingler, and V. de Lorenzo. 1994. Cross-regulation by Xy1R and DmpR activators of Pseudomonas putida suggests that transcriptional control of biodegradative operons evolves independently of catabolic genes. J. Bacteriol. 176:5052-5058.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 5052-5058
-
-
Fernández, S.1
Shingler, V.2
De Lorenzo, V.3
-
13
-
-
0018848378
-
Construction of a partial diploid for the degradative pathway encoded by the TOL plasmid (pWW0) from Pseudomonas putida mt-2: Evidence for a positive nature of the regulation by the xylR gene
-
Franklin, F. C. H., and P. A. Williams. 1980. Construction of a partial diploid for the degradative pathway encoded by the TOL plasmid (pWW0) from Pseudomonas putida mt-2: evidence for a positive nature of the regulation by the xylR gene. Mol. Gen. Genet. 177:321-328.
-
(1980)
Mol. Gen. Genet.
, vol.177
, pp. 321-328
-
-
Franklin, F.C.H.1
Williams, P.A.2
-
14
-
-
0018179268
-
Isolation of large bacterial plasmids and characterization of the P2 incompatibility group plasmids pMG1 and pMG5
-
Hansen, J. B., and R. H. Olsen. 1978. Isolation of large bacterial plasmids and characterization of the P2 incompatibility group plasmids pMG1 and pMG5. J. Bacteriol. 135:227-238.
-
(1978)
J. Bacteriol.
, vol.135
, pp. 227-238
-
-
Hansen, J.B.1
Olsen, R.H.2
-
15
-
-
0021994728
-
Determination of the transcription initiation site and identification of the protein product of the regulatory gene xylR for xyl operons on the TOL plasmid
-
Inouye, S., A. Nakazawa, and T. Nakazawa. 1985. Determination of the transcription initiation site and identification of the protein product of the regulatory gene xylR for xyl operons on the TOL plasmid. J. Bacteriol. 163:863-869.
-
(1985)
J. Bacteriol.
, vol.163
, pp. 863-869
-
-
Inouye, S.1
Nakazawa, A.2
Nakazawa, T.3
-
16
-
-
0023945801
-
Nucleotide sequence of the regulatory gene xylR of the TOL plasmid from Pseudomonas putida
-
Inouye, S., A. Nakazawa, and T. Nakazawa. 1988. Nucleotide sequence of the regulatory gene xylR of the TOL plasmid from Pseudomonas putida. Gene 66:301-306.
-
(1988)
Gene
, vol.66
, pp. 301-306
-
-
Inouye, S.1
Nakazawa, A.2
Nakazawa, T.3
-
17
-
-
0025675633
-
Upstream regulatory sequence for transcriptional activator XylR in the first operon of xylene metabolism on the TOL plasmid
-
Inouye, S., M. Gomada, U. M. Sangodkar, A. Nakazawa, and T. Nakazawa. 1990. Upstream regulatory sequence for transcriptional activator XylR in the first operon of xylene metabolism on the TOL plasmid. J. Mol. Biol. 216: 251-260.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 251-260
-
-
Inouye, S.1
Gomada, M.2
Sangodkar, U.M.3
Nakazawa, A.4
Nakazawa, T.5
-
18
-
-
0030754267
-
Multiple pathways for toluene degradation in Burkholderia sp. strain JS150
-
Johnson, G. R., and R. H. Olsen. 1997. Multiple pathways for toluene degradation in Burkholderia sp. strain JS150. Appl. Environ. Microbiol. 63: 4047-4052.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4047-4052
-
-
Johnson, G.R.1
Olsen, R.H.2
-
19
-
-
0018625857
-
Plasmid cloning vehicles derived from plasmid ColE1, F, RK6 and RK2
-
Kahn, M., R. Kolter, C. M. Thomas, D. Figurski, R. Meyer, E. Remaut, and D. R. Helinski. 1979. Plasmid cloning vehicles derived from plasmid ColE1, F, RK6 and RK2. Methods Enzymol. 68:268-280.
-
(1979)
Methods Enzymol.
, vol.68
, pp. 268-280
-
-
Kahn, M.1
Kolter, R.2
Thomas, C.M.3
Figurski, D.4
Meyer, R.5
Remaut, E.6
Helinski, D.R.7
-
20
-
-
0025938894
-
Prokaryotic transcriptional enhancers and enhancer-binding proteins
-
Kustu, S., A. K. North, and D. S. Weiss. 1991. Prokaryotic transcriptional enhancers and enhancer-binding proteins. Trends Biochem. Sci. 16:397-342.
-
(1991)
Trends Biochem. Sci.
, vol.16
, pp. 397-1342
-
-
Kustu, S.1
North, A.K.2
Weiss, D.S.3
-
22
-
-
0030832088
-
Cross-regulation of toluene monooxygenases by the transcriptional activators TbmR and TbuT
-
Leahy, J. G., G. R. Johnson, and R. H. Olsen. 1997. Cross-regulation of toluene monooxygenases by the transcriptional activators TbmR and TbuT. Appl. Environ. Microbiol. 63:3735-3739.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 3735-3739
-
-
Leahy, J.G.1
Johnson, G.R.2
Olsen, R.H.3
-
23
-
-
0027282545
-
Transcriptional control of the Pseudomonas putida TOL plasmid catabolic pathways
-
Marques, S., and J. L. Ramos. 1993. Transcriptional control of the Pseudomonas putida TOL plasmid catabolic pathways. Mol. Microbiol. 9:923-929.
-
(1993)
Mol. Microbiol.
, vol.9
, pp. 923-929
-
-
Marques, S.1
Ramos, J.L.2
-
24
-
-
0000851258
-
Rapid colorimetric estimation of phenol
-
Martin, R. W. 1949. Rapid colorimetric estimation of phenol. Anal. Chem. 21:1419-1420.
-
(1949)
Anal. Chem.
, vol.21
, pp. 1419-1420
-
-
Martin, R.W.1
-
25
-
-
0032570025
-
Transcriptional activation of the catechol and chlorocatechol operons: Variations on the theme
-
McFall, S. M., S. A. Chugani, and A. M. Chakrabarty. 1998. Transcriptional activation of the catechol and chlorocatechol operons: variations on the theme. Gene 223:257-267.
-
(1998)
Gene
, vol.223
, pp. 257-267
-
-
McFall, S.M.1
Chugani, S.A.2
Chakrabarty, A.M.3
-
26
-
-
0027340543
-
54 bacterial enhancer-binding protein family: Mechanism of action and phylogenetic relationship of their functional domains
-
54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains. J. Bacteriol. 175:6067-6074.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 6067-6074
-
-
Morett, E.1
Segovia, L.2
-
27
-
-
0028944411
-
Aromatic effector activation of the NtrC-like transcriptional regulator PhhR limits the catabolic potential of the (methyl)phenol degradative pathway it controls
-
Ng, L. C., C. L. Poh, and V. Shingler. 1995. Aromatic effector activation of the NtrC-like transcriptional regulator PhhR limits the catabolic potential of the (methyl)phenol degradative pathway it controls. J. Bacteriol. 177:1485-1490.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 1485-1490
-
-
Ng, L.C.1
Poh, C.L.2
Shingler, V.3
-
28
-
-
0038566311
-
Genetic evidence for interdomain regulation of the phenol-responsive σ54-dependent activator DmpR
-
Ng, L. C., E. O'Neill, and V. Shingler. 1996. Genetic evidence for interdomain regulation of the phenol-responsive σ54-dependent activator DmpR. J. Biol. Chem. 271:17281-17286.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 17281-17286
-
-
Ng, L.C.1
O'Neill, E.2
Shingler, V.3
-
29
-
-
0027248437
-
Prokaryotic enhancer-binding proteins reflect eukaryote-like modularity: The puzzle of nitrogen regulatory protein C
-
North, A. K., K. E. Klose, K. M. Stedman, and S. Kustu. 1993. Prokaryotic enhancer-binding proteins reflect eukaryote-like modularity: the puzzle of nitrogen regulatory protein C. J. Bacteriol. 175:4267-4273.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 4267-4273
-
-
North, A.K.1
Klose, K.E.2
Stedman, K.M.3
Kustu, S.4
-
30
-
-
0014941882
-
Metapyrocatechase. Substrate specificity and mode of ring fission
-
Nozaki, M., S. Kotani, K. Ono, and S. Seno. 1970. Metapyrocatechase. Substrate specificity and mode of ring fission. Biochim. Biophys. Acta 220: 213-223.
-
(1970)
Biochim. Biophys. Acta
, vol.220
, pp. 213-223
-
-
Nozaki, M.1
Kotani, S.2
Ono, K.3
Seno, S.4
-
31
-
-
0029919623
-
In vitro activities of an N-truncated form of XylR, a σ54-dependent transcriptional activator of Pseudomonas putida
-
Pérez-Martin, J., and V. De Lorenzo. 1996. In vitro activities of an N-truncated form of XylR, a σ54-dependent transcriptional activator of Pseudomonas putida. J. Mol. Biol. 258:575-587.
-
(1996)
J. Mol. Biol.
, vol.258
, pp. 575-587
-
-
Pérez-Martin, J.1
De Lorenzo, V.2
-
32
-
-
0026759380
-
Cloning and transposon vectors derived from satellite bacteriophage P4 for genetic manipulation of Pseudomonas and other gram-negative bacteria
-
Polissi, A., G. Bertoni, F. Acquati, and G. Dehò. 1992. Cloning and transposon vectors derived from satellite bacteriophage P4 for genetic manipulation of Pseudomonas and other gram-negative bacteria. Plasmid 28:101-114.
-
(1992)
Plasmid
, vol.28
, pp. 101-114
-
-
Polissi, A.1
Bertoni, G.2
Acquati, F.3
Dehò, G.4
-
33
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(1989)
Molecular Cloning: A Laboratory Manual, 2nd Ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
35
-
-
0022243202
-
Transcriptional control of the nah and sal hydrocarbon-degradation operons by the nahR gene product
-
Schell, M. A. 1985. Transcriptional control of the nah and sal hydrocarbon-degradation operons by the nahR gene product. Gene 36:301-309.
-
(1985)
Gene
, vol.36
, pp. 301-309
-
-
Schell, M.A.1
-
36
-
-
0027446708
-
Molecular biology of the LysR family of transcriptional regulators
-
Schell, M. A. 1993. Molecular biology of the LysR family of transcriptional regulators. Annu. Rev. Microbiol. 47:597-626.
-
(1993)
Annu. Rev. Microbiol.
, vol.47
, pp. 597-626
-
-
Schell, M.A.1
-
37
-
-
0029670970
-
Signal sensing by σ54-dependent regulators: Derepression as a control mechanism
-
Shingler, V. 1996. Signal sensing by σ54-dependent regulators: derepression as a control mechanism. Mol. Microbiol. 19:409-416.
-
(1996)
Mol. Microbiol.
, vol.19
, pp. 409-416
-
-
Shingler, V.1
-
38
-
-
0029132191
-
Direct regulation of the ATPase activity of the transcriptional activator DmpR by aromatic compounds
-
Shingler, V., and H. Pavel. 1995. Direct regulation of the ATPase activity of the transcriptional activator DmpR by aromatic compounds. Mol. Microbiol. 17:505-513.
-
(1995)
Mol. Microbiol.
, vol.17
, pp. 505-513
-
-
Shingler, V.1
Pavel, H.2
-
39
-
-
0028325759
-
Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600
-
Shingler, V., and T. Moore. 1994. Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600. J. Bacteriol. 176:1555-1560.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 1555-1560
-
-
Shingler, V.1
Moore, T.2
-
40
-
-
0027400541
-
Cloning and nucleotide sequence of the gene encoding the positive regulator (DmpR) of the phenol catabolic pathway encoded by pVI150 and identification of DmpR as a member of the NtrC family of transcriptional activators
-
Shingler, V., M. Bartilson, and T. Moore. 1993. Cloning and nucleotide sequence of the gene encoding the positive regulator (DmpR) of the phenol catabolic pathway encoded by pVI150 and identification of DmpR as a member of the NtrC family of transcriptional activators. J. Bacteriol. 175: 1596-1604.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 1596-1604
-
-
Shingler, V.1
Bartilson, M.2
Moore, T.3
-
41
-
-
0023506006
-
Molecular characterization of cloned avirulence genes from race 0 and race 1 of Pseudomonas syringae pv. glycinea
-
Staskawicz, B., D. Dahlbeck, N. Keen, and C. Napoli. 1987. Molecular characterization of cloned avirulence genes from race 0 and race 1 of Pseudomonas syringae pv. glycinea. J. Bacteriol. 169:5789-5794.
-
(1987)
J. Bacteriol.
, vol.169
, pp. 5789-5794
-
-
Staskawicz, B.1
Dahlbeck, D.2
Keen, N.3
Napoli, C.4
-
42
-
-
0031024264
-
XylUW, two genes at the start of the upper pathway operon of TOL plasmid pWW0, appear to play no essential part in determining its catabolic phenotype
-
Williams, P. A., L. M. Shaw, C. W. Pitt, and M. Vrecl. 1997. XylUW, two genes at the start of the upper pathway operon of TOL plasmid pWW0, appear to play no essential part in determining its catabolic phenotype. Microbiology 143:101-107.
-
(1997)
Microbiology
, vol.143
, pp. 101-107
-
-
Williams, P.A.1
Shaw, L.M.2
Pitt, C.W.3
Vrecl, M.4
-
43
-
-
0021943518
-
Improved M13 phage cloning vector and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
-
Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vector and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
-
(1985)
Gene
, vol.33
, pp. 103-119
-
-
Yanisch-Perron, C.1
Vieira, J.2
Messing, J.3
-
44
-
-
0026003060
-
Cloning and characterization of a Pseudomonas mendocina KR1 gene cluster encoding toluene-4-monooxygenase
-
Yen, K., M. R. Karl, L. M. Blatt, M. J. Simon, R. B. Winter, P. R. Fausset, H. S. Lu, A. A. Harcourt, and K. K. Chen. 1991. Cloning and characterization of a Pseudomonas mendocina KR1 gene cluster encoding toluene-4-monooxygenase. J. Bacteriol. 173:5315-5327.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 5315-5327
-
-
Yen, K.1
Karl, M.R.2
Blatt, L.M.3
Simon, M.J.4
Winter, R.B.5
Fausset, P.R.6
Lu, H.S.7
Harcourt, A.A.8
Chen, K.K.9
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