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Volumn 113, Issue 1, 2006, Pages 147-155

Dot-blot-SNP analysis for practical plant breeding and cultivar identification in rice

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; GENES; GENETIC ENGINEERING; PLANT CELL CULTURE;

EID: 33745199851     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-006-0281-7     Document Type: Article
Times cited : (46)

References (32)
  • 1
    • 0034733243 scopus 로고    scopus 로고
    • A large scale analysis of cDNA in Arabidopsis thaliana: Generation of 12,028 non-redundant expressed sequence tags from normalized and size-selected cDNA libraries
    • Asamizu E, Nakamura Y, Sato S, Tabata S (2000) A large scale analysis of cDNA in Arabidopsis thaliana: generation of 12,028 non-redundant expressed sequence tags from normalized and size-selected cDNA libraries. DNA Res 7:175-180
    • (2000) DNA Res , vol.7 , pp. 175-180
    • Asamizu, E.1    Nakamura, Y.2    Sato, S.3    Tabata, S.4
  • 3
    • 1942434700 scopus 로고    scopus 로고
    • Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1
    • Doi K, Izawa T, Fuse T, Yamanouchi U, Kubo T, Shimatani Z, Yano M, Yoshimura A (2004) Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1. Genes Dev 18:926-936
    • (2004) Genes Dev , vol.18 , pp. 926-936
    • Doi, K.1    Izawa, T.2    Fuse, T.3    Yamanouchi, U.4    Kubo, T.5    Shimatani, Z.6    Yano, M.7    Yoshimura, A.8
  • 4
    • 0025978277 scopus 로고
    • A simple and rapid method for the preparation of plant genomic DNA for PCR analysis
    • Edwards K, Johnstone C, Thompson C (1991) A simple and rapid method for the preparation of plant genomic DNA for PCR analysis. Nucleic Acids Res 19:1349
    • (1991) Nucleic Acids Res , vol.19 , pp. 1349
    • Edwards, K.1    Johnstone, C.2    Thompson, C.3
  • 5
    • 0001430252 scopus 로고
    • DNA fragments differing by single base-pair substitutions are separated in denaturing gradient gels: Correspondence with melting theory
    • U S A
    • Fischer SG, Lerman LS (1983) DNA fragments differing by single base-pair substitutions are separated in denaturing gradient gels: correspondence with melting theory. Proc Natl Acad Sci U S A 80:1579-1583
    • (1983) Proc Natl Acad Sci , vol.80 , pp. 1579-1583
    • Fischer, S.G.1    Lerman, L.S.2
  • 8
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • Internationl Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436:793-800
    • (2005) Nature , vol.436 , pp. 793-800
  • 10
    • 0038723184 scopus 로고    scopus 로고
    • Enhanced allele-specific PCR discrimination in SNP genotyping using 3′ locked nucleic acid (LNA) primers
    • Latorra D, Campbell K, Wolter A, Hurley JM (2003) Enhanced allele-specific PCR discrimination in SNP genotyping using 3′ locked nucleic acid (LNA) primers. Hum Mutat 22:79-85
    • (2003) Hum Mutat , vol.22 , pp. 79-85
    • Latorra, D.1    Campbell, K.2    Wolter, A.3    Hurley, J.M.4
  • 11
    • 0042593083 scopus 로고    scopus 로고
    • Detection of single nucleotide substitution by competitive allele-specific short oligonucleotide hybridization (CASSOH) with immunochromatographic strip
    • Matsubara Y, Kure S (2003) Detection of single nucleotide substitution by competitive allele-specific short oligonucleotide hybridization (CASSOH) with immunochromatographic strip. Hum Mutat 22:166-172
    • (2003) Hum Mutat , vol.22 , pp. 166-172
    • Matsubara, Y.1    Kure, S.2
  • 12
    • 0032077256 scopus 로고    scopus 로고
    • A robust method for detecting single-nucleotide changes as polymorphic markers by PCR
    • Michaels SD, Amasino RM (1998) A robust method for detecting single-nucleotide changes as polymorphic markers by PCR. Plant J 14:381-385
    • (1998) Plant J , vol.14 , pp. 381-385
    • Michaels, S.D.1    Amasino, R.M.2
  • 13
    • 0036928794 scopus 로고    scopus 로고
    • Search for and analysis of single nucleotide polymorphisms (SNPs) in rice (Oryza sativa, Oryza rufipogon) and establishment of SNP markers
    • Nasu S, Suzuki J, Ohta R, Hasegawa K, Yui R, Kitazawa N, Monna L, Minobe Y (2002) Search for and analysis of single nucleotide polymorphisms (SNPs) in rice (Oryza sativa, Oryza rufipogon) and establishment of SNP markers. DNA Res 9:163-171
    • (2002) DNA Res , vol.9 , pp. 163-171
    • Nasu, S.1    Suzuki, J.2    Ohta, R.3    Hasegawa, K.4    Yui, R.5    Kitazawa, N.6    Monna, L.7    Minobe, Y.8
  • 14
    • 0024595101 scopus 로고
    • Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms
    • USA
    • Orita M, Iwahana H, Kanazawa H, Hayashi K, Sekiya T (1989) Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proc Natl Acad Sci USA 86:2766-2770
    • (1989) Proc Natl Acad Sci , vol.86 , pp. 2766-2770
    • Orita, M.1    Iwahana, H.2    Kanazawa, H.3    Hayashi, K.4    Sekiya, T.5
  • 15
    • 0031572434 scopus 로고    scopus 로고
    • Discrimination of single-nucleotide polymorphisms in human DNA using peptide nucleic acid probes detected by MALDI-TOF mass spectrometry
    • Ross PL, Lee K, Belgrader P (1997) Discrimination of single-nucleotide polymorphisms in human DNA using peptide nucleic acid probes detected by MALDI-TOF mass spectrometry. Anal Chem 69:4197-4202
    • (1997) Anal Chem , vol.69 , pp. 4197-4202
    • Ross, P.L.1    Lee, K.2    Belgrader, P.3
  • 16
    • 23444454614 scopus 로고
    • Extraordinarily polymorphic microsatellite DNA in barley: Species diversity, chromosomal locations, and population dynamics
    • USA
    • Saghai Maroof MA, Biyashev RM, Yang GP, Zhang Q, Allard RW (1994) Extraordinarily polymorphic microsatellite DNA in barley: species diversity, chromosomal locations, and population dynamics. Proc Natl Acad Sci USA 91:5466-5470
    • (1994) Proc Natl Acad Sci , vol.91 , pp. 5466-5470
    • Saghai Maroof, M.A.1    Biyashev, R.M.2    Yang, G.P.3    Zhang, Q.4    Allard, R.W.5
  • 17
    • 0023022499 scopus 로고
    • Analysis of enzymatically amplified beta-globin and HLA-DQ alpha DNA with allele-specific oligonucleotide probes
    • Saiki RK, Bugawan TL, Horn GT, Mullis KB, Erlich HA (1986) Analysis of enzymatically amplified beta-globin and HLA-DQ alpha DNA with allele-specific oligonucleotide probes. Nature 324:163-166
    • (1986) Nature , vol.324 , pp. 163-166
    • Saiki, R.K.1    Bugawan, T.L.2    Horn, G.T.3    Mullis, K.B.4    Erlich, H.A.5
  • 19
    • 0036062520 scopus 로고    scopus 로고
    • Molecular characterization of Wx-mq, a novel mutant gene for low-amylose content in endosperm of rice (Oryza sativa L.)
    • Sato H, Suzuki Y, Sakai M, Imbe T (2002) Molecular characterization of Wx-mq, a novel mutant gene for low-amylose content in endosperm of rice (Oryza sativa L.). Breed Sci 52:2131-2135
    • (2002) Breed Sci , vol.52 , pp. 2131-2135
    • Sato, H.1    Suzuki, Y.2    Sakai, M.3    Imbe, T.4
  • 20
    • 11144325580 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms in randomly selected genes among japonica rice (Oryza sativa L.) varieties identified by PCR-RF-SSCP
    • Shirasawa K, Monna L, Kishitani S, Nishio T (2004) Single nucleotide polymorphisms in randomly selected genes among japonica rice (Oryza sativa L.) varieties identified by PCR-RF-SSCP. DNA Res 11:275-283
    • (2004) DNA Res , vol.11 , pp. 275-283
    • Shirasawa, K.1    Monna, L.2    Kishitani, S.3    Nishio, T.4
  • 21
    • 20844438392 scopus 로고    scopus 로고
    • Dot-blot analysis for identification of japonica rice cultivars and genotyping of recombinant inbred lines
    • Shirasawa K, Kishitani S, Nishio T (2005) Dot-blot analysis for identification of japonica rice cultivars and genotyping of recombinant inbred lines. Breed Sci 55:187-192
    • (2005) Breed Sci , vol.55 , pp. 187-192
    • Shirasawa, K.1    Kishitani, S.2    Nishio, T.3
  • 24
    • 12444276781 scopus 로고    scopus 로고
    • Ultraviolet-B sensitivities in Japanese lowland rice cultivars: Cyclobutane pyrimidine dimer photolyase activity and gene mutation
    • Teranishi M, Iwamatsu Y, Hidema J, Kumagai T (2004) Ultraviolet-B sensitivities in Japanese lowland rice cultivars: cyclobutane pyrimidine dimer photolyase activity and gene mutation. Plant Cell Physiol 45:1848-1856
    • (2004) Plant Cell Physiol , vol.45 , pp. 1848-1856
    • Teranishi, M.1    Iwamatsu, Y.2    Hidema, J.3    Kumagai, T.4
  • 25
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815
    • (2000) Nature , vol.408 , pp. 796-815
  • 28
    • 0027182485 scopus 로고
    • A simple method of preparing plant samples for PCR
    • Wang H, Qi M, Cutler AJ (1993) A simple method of preparing plant samples for PCR. Nucleic Acids Res 21:4153-4154
    • (1993) Nucleic Acids Res , vol.21 , pp. 4153-4154
    • Wang, H.1    Qi, M.2    Cutler, A.J.3
  • 32
    • 3442897910 scopus 로고    scopus 로고
    • A gel-free SNP genotyping method: Bioluminometric assay coupled with modified primer extension reactions (BAMPER) directly from double-stranded PCR products
    • Zhou GH, Shirakura H, Kamahori M, Okano K, Nagai K, Kambara H (2004) A gel-free SNP genotyping method: bioluminometric assay coupled with modified primer extension reactions (BAMPER) directly from double-stranded PCR products. Hum Mutat 24:155-163
    • (2004) Hum Mutat , vol.24 , pp. 155-163
    • Zhou, G.H.1    Shirakura, H.2    Kamahori, M.3    Okano, K.4    Nagai, K.5    Kambara, H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.