Self-quenching DNA probes based on dye dimerization for identification of mycobacteria

International Journal of Environmental Analytical Chemistry

Volumn 85, Issue 9-11, 2005, Pages 625-637

  Knemeyer, Jens Peter ^a   Marmé, Nicole ^b   Häfner, Bernhard ^c   Habl, Gregor ^b   Schäfer, Gabriela ^b   Müller, Matthias ^c   Nolte, Oliver ^c   Sauer, Markus ^d   Wolfrum, Jürgen ^b  

^a GERMAN CANCER RESEARCH CENTER DKFZ   (Germany)

^b UNIVERSITY OF HEIDELBERG   (Germany)

^c Department Hygiene and Medical Microbiology   (Germany)

^d BIELEFELD UNIVERSITY   (Germany)

Author keywords

Dye dimerization; Self quenching DNA probes; Single molecule spectroscopy

Indexed keywords

BACTERIA; COMPUTER SIMULATION; DIMERIZATION; DNA; FLUORESCENCE; NUCLEIC ACIDS; QUENCHING;

DYE-DIMERIZATION; SELF-QUENCHING DNA PROBES; SINGLE-MOLECULE SPECTROSCOPY;

PROBES;

CORYNEBACTERINEAE; MYCOBACTERIUM; MYCOBACTERIUM XENOPI;

EID: 33745088622     PISSN: 03067319     EISSN: 10290397     Source Type: Journal    
DOI: 10.1080/03067310500146094     Document Type: Conference Paper

References (29)

1. F.M. Ausubel, R. Brent, R.E. Kingston, D.D. Moore, J.G. Seidman, J.A. Smith, K. Struhl. Current Protocols in Molecular Biology, John Wiley & Sons, New York (1994).
2. F.F. Chehab, Y.W. Kann. Proc. Natl. Acad. Sci. USA, 86, 9178 (1989).
3. N.J. Gibson, H.L. Gillard, D. Whitcombe, R.M. Ferrie, C.R. Newton, S. Little. Clin. Chem., 43, 1336 (1997).
4. M. Kinjo, R. Rigler. Nucleic Acid Res., 23, 1795 (1995).
5. L.E. Morrison, T.C. Halder, L.M. Stols. Anal. Biochem., 183, 231 (1989).
6. S. Tyagi, F.R. Kramer. Nat. Biotechnol., 14, 303 (1996).
7. G. Bonnet, S. Tyagi, A. Libchaber, F.R. Kramer. Proc. Natl. Acad. Sci. USA, 96, 6171 (1999).
8. S.A.E. Marras, F.R. Kramer, S. Tyagi. Genet. Anal., 14, 151 (1999).
9. G. Yao, W. Tan. Anal. Biochem., 331, 216 (2004).
10. B. Dubertret, M. Calame, A. Libchaber. Nat. Biotechnol., 19, 365 (2001).
11. M. Sauer, K.T. Han, R. Müller, S. Nord, A. Schulz, S. Seeger, J. Wolfrum, J. Arden-Jacob, G. Deltau, N.J. Marx, K.H. Drexhage. J. Fluoresc., 5, 247 (1995).
12. U. Lieberwirth, J. Arden-Jacob, K.H. Drexhage, D.P. Herten, R. Müller, M. Neumann, A. Schulz, S. Siebert, G. Sagner, S. Klingel, M. Sauer, J. Wolfrum. Anal. Chem., 70, 4771 (1998).
13. M. Sauer, K.H. Drexhage, U. Lieberwirth, R. Müller, S. Nord, C. Zander. Chem. Phys. Lett., 284, 153 (1998).
14. T. Heinlein, J.P. Knemeyer, O. Piestert, M. Sauer. J. Phys. Chem. B, 107, 7957 (2003).
15. J.P. Knemeyer, N. Marmé, M. Sauer. Anal. Chem., 72, 3717 (2000).
16. A. Castro, J.G.K. Williams. Anal. Chem., 69, 3915 (1997).
17. X. Liu, W. Tan. Anal. Chem., 71, 5054 (1999).
18. F.J. Steemers, J.A. Ferguson, D.R. Walt. Nat. Biotechnol., 18, 91 (2000).
19. M. Culha, D.L. Stokes, G.D. Griffin, T. Vo-Dinh. Biosens. Bioelectron., 19, 1007 (2004).
20. P. Tinnefeld, V. Buschmann, D.P. Herten, K.-T. Han, M. Sauer. Single Mol., 3, 215 (2000).
21. O. Piestert, H. Barsch, V. Buschmann, T. Heinlein, J.P. Knemeyer, K.D. Weston, M. Sauer. Nano Lett., 3, 979 (2003).
22. J.P. Euzéby. Int. J. Syst. Bacteriol., 47, 590 (1997).
23. M. Kasha. Radiat. Res., 20, 55 (1963).
24. V.I. Yuzhakov. Russian Chem. Rev., 48, 1076 (1979).
25. M. Zuker. Nucleic Acids Res., 31, 3406 (2003).
26. N. Peyret, Prediction of nucleic acid hybridization: Parameters and algorithms. PhD dissertation, Wayne State University, Department of Chemistry, Detroit, MI (2000).
27. W.P. Ambrose, P.M. Goodwin, J.H. Jett, A. Van Orden, J.H. Werner, R.A. Keller. Chem. Rev., 99, 2929 (1999).
28. J. Schaffer, A. Volkmer, C. Eggeling, V. Subramanian, G. Striker, C.A.M. Seidel. J. Phys. Chem. A, 103, 331 (1999).
29. A.A. Deniz, M. Dahan, J.R. Grunwell, T. Ha, A.E. Faulhaber, D.S. Chemla, S. Weiss, P.G. Schultz. Proc. Natl. Acad. Sci. USA, 96, 3670 (1999).