메뉴 건너뛰기




Volumn 57, Issue 1, 2006, Pages 116-127

Bacterial community structure of a pesticide-contaminated site and assessment of changes induced in community structure during bioremediation

Author keywords

ARDRA; Bioremediation; Community structure; p nitrophenol; T RFLP

Indexed keywords

ARTHROBACTER PROTOPHORMIAE; PESTICIDE; UNCLASSIFIED DRUG;

EID: 33745014137     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2006.00103.x     Document Type: Article
Times cited : (75)

References (39)
  • 1
    • 4143066061 scopus 로고    scopus 로고
    • Correspondence between community structure and function during succession in phenol- and phenol-plus-trichloroethene-fed sequencing batch reactors
    • Ayala-Del-Rio HL Callister SJ Criddle CS Tiedje JM 2004 Correspondence between community structure and function during succession in phenol- and phenol-plus-trichloroethene-fed sequencing batch reactors. Appl Environ Microbiol 70: 4950 4954.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 4950-4954
    • Ayala-Del-Rio, H.L.1    Callister, S.J.2    Criddle, C.S.3    Tiedje, J.M.4
  • 2
    • 0035257574 scopus 로고    scopus 로고
    • 16S rDNA diversiy of cultured and unculured procryotes of a mat sample from Lake Fryxll Mc Murdo Dry Valleys, Antarctica
    • Brambilla E Hippe H Hagelsein A Tindall BJ Stackebrandt E 2001 16S rDNA diversiy of cultured and unculured procryotes of a mat sample from Lake Fryxll Mc Murdo Dry Valleys, Antarctica. Extremophiles 5: 23 33.
    • (2001) Extremophiles , vol.5 , pp. 23-33
    • Brambilla, E.1    Hippe, H.2    Hagelsein, A.3    Tindall, B.J.4    Stackebrandt, E.5
  • 3
    • 0035935030 scopus 로고    scopus 로고
    • Microbial diversity in smoked salmon examined by a culture-independent molecular approach - A preliminary study
    • Cambon-Bonavita MA Lesongeur S Menoux A Barbier G 2001 Microbial diversity in smoked salmon examined by a culture-independent molecular approach - a preliminary study. Int J Food Microbiol 70: 179 187.
    • (2001) Int J Food Microbiol , vol.70 , pp. 179-187
    • Cambon-Bonavita, M.A.1    Lesongeur, S.2    Menoux, A.3    Barbier, G.4
  • 5
    • 0034614463 scopus 로고    scopus 로고
    • Degradation of o-nitrobenzoate via anthranilic acid (o-aminobenzoate) by Arthrobacter protophormiae RKJ100: A plasmid-encoded new pathway
    • Chauhan A Jain RK 2000 Degradation of o-nitrobenzoate via anthranilic acid (o-aminobenzoate) by Arthrobacter protophormiae RKJ100: a plasmid-encoded new pathway. Biochem Biophys Res Commun 267: 236 244.
    • (2000) Biochem Biophys Res Commun , vol.267 , pp. 236-244
    • Chauhan, A.1    Jain, R.K.2
  • 6
    • 0034696780 scopus 로고    scopus 로고
    • Plasmid-encoded degradation of p-nitrophenol and 4-nitrocatechol by Arthrobacter protophormiae RKJ100
    • Chauhan A Chakraborti AK Jain RK 2000 Plasmid-encoded degradation of p-nitrophenol and 4-nitrocatechol by Arthrobacter protophormiae RKJ100. Biochem Biophys Res Commun 270: 733 740.
    • (2000) Biochem Biophys Res Commun , vol.270 , pp. 733-740
    • Chauhan, A.1    Chakraborti, A.K.2    Jain, R.K.3
  • 7
    • 0033741146 scopus 로고    scopus 로고
    • 16S rDNA analysis for the characterization of denitrifying bacteria isolated from three agricultural soils
    • Cheneby D Phillipot L Hartmann A Henalut C Gemon JC 2000 16S rDNA analysis for the characterization of denitrifying bacteria isolated from three agricultural soils. FEMS Microbiol Ecol 24: 121 128.
    • (2000) FEMS Microbiol Ecol , vol.24 , pp. 121-128
    • Cheneby, D.1    Phillipot, L.2    Hartmann, A.3    Henalut, C.4    Gemon, J.C.5
  • 8
    • 0035146134 scopus 로고    scopus 로고
    • Novel bacterial lineages at the (sub0 division level as detected by signature nucleotide-targeted recovery of 16S rRNA genes from bulk soil an rice roots of flooded rice microcosms
    • Derakshani M Lukow T Liesack W 2001 Novel bacterial lineages at the (sub0 division level as detected by signature nucleotide-targeted recovery of 16S rRNA genes from bulk soil an rice roots of flooded rice microcosms. Appl Environ Microbiol 67: 623 631.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 623-631
    • Derakshani, M.1    Lukow, T.2    Liesack, W.3
  • 10
    • 0033941482 scopus 로고    scopus 로고
    • Assessment of microbial diversity in four southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis
    • Dunbar J Ticknor lO Kuske CR 2000 Assessment of microbial diversity in four southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis. Appl Environ Microbiol 66: 2943 2950.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 2943-2950
    • Dunbar, J.1    Lo, T.2    Kuske, C.R.3
  • 11
    • 0034852663 scopus 로고    scopus 로고
    • Biomonitoring of continuous microbial community adaptation towards more efficient phenol-degradation in a fed-batch bioreactor
    • Guieysse B Wickstrom P Forsman M Mattiasson B 2001 Biomonitoring of continuous microbial community adaptation towards more efficient phenol-degradation in a fed-batch bioreactor. Appl Microbiol Biotechnol 56: 780 787.
    • (2001) Appl Microbiol Biotechnol , vol.56 , pp. 780-787
    • Guieysse, B.1    Wickstrom, P.2    Forsman, M.3    Mattiasson, B.4
  • 12
    • 22544436996 scopus 로고    scopus 로고
    • Potential application of ribosomal intergenic spacer analysis to the microbial community analysis of agronomic products
    • Ikeda S Fujimura T Ytow N 2005 Potential application of ribosomal intergenic spacer analysis to the microbial community analysis of agronomic products. J Agric Food Chem 53: 5604 5611.
    • (2005) J Agric Food Chem , vol.53 , pp. 5604-5611
    • Ikeda, S.1    Fujimura, T.2    Ytow, N.3
  • 13
    • 25144467031 scopus 로고    scopus 로고
    • Classification of oligonucleotide fingerprints: Application for microbial community and gene expression analyses
    • Jampachaisri K Valinsky L Borneman J Press SJ 2005 Classification of oligonucleotide fingerprints: application for microbial community and gene expression analyses. Bioinformatics 21: 3122 3130.
    • (2005) Bioinformatics , vol.21 , pp. 3122-3130
    • Jampachaisri, K.1    Valinsky, L.2    Borneman, J.3    Press, S.J.4
  • 14
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro, H.N., ed), pp. Academic Press, New York.
    • Jukes TH Cantor CR 1969 Evolution of protein molecules. Mammalian Protein Metabolism Munro H.N, ed), pp. 21 123. Academic Press, New York.
    • (1969) Mammalian Protein Metabolism , pp. 21-123
    • Jukes, T.H.1    Cantor, C.R.2
  • 15
    • 0018387765 scopus 로고
    • Priority pollutants I. a perspective view
    • Keith LH Telliard WA 1979 Priority pollutants I. A perspective view. Environ Sci Technol 13: 416 423.
    • (1979) Environ Sci Technol , vol.13 , pp. 416-423
    • Keith, L.H.1    Telliard, W.A.2
  • 17
    • 0035214837 scopus 로고    scopus 로고
    • Structural diversity of microorganisms in chemically perturbed soil assessed by molecular and cytochemical approaches
    • Kozdroj J van Elsas JD 2001 Structural diversity of microorganisms in chemically perturbed soil assessed by molecular and cytochemical approaches. J Microbiol Methods 43: 197 212.
    • (2001) J Microbiol Methods , vol.43 , pp. 197-212
    • Kozdroj, J.1    Van Elsas, J.D.2
  • 18
    • 18344372262 scopus 로고    scopus 로고
    • Pot and field studies on bioremediation of p-nitrophenol contaminated soil using Arthrobacter protophormiae RKJ100
    • Labana S Pandey G Paul D Sharma NK Basu A Jain RK 2005 Pot and field studies on bioremediation of p-nitrophenol contaminated soil using Arthrobacter protophormiae RKJ100. Environ Sci Technol 39: 3330 3337.
    • (2005) Environ Sci Technol , vol.39 , pp. 3330-3337
    • Labana, S.1    Pandey, G.2    Paul, D.3    Sharma, N.K.4    Basu, A.5    Jain, R.K.6
  • 19
    • 16544385301 scopus 로고    scopus 로고
    • Identification of the bacterial community of maple sap by using amplified ribosomal DNA (rDNA) restriction analysis and rDNA sequencing
    • Lagace L Pitre M Jacques M Roy D 2004 Identification of the bacterial community of maple sap by using amplified ribosomal DNA (rDNA) restriction analysis and rDNA sequencing. Appl Environ Microbiol 70: 2052 2060.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 2052-2060
    • Lagace, L.1    Pitre, M.2    Jacques, M.3    Roy, D.4
  • 20
    • 23744502202 scopus 로고    scopus 로고
    • Culture independent detection of Sphingomonas sp. EPA 505 related strains in soils contaminated with polycyclic aromatic hydrocarbons (PAHs)
    • Leys NM Ryngaert A Bastiaens L Top EM Verstraete W Springael D 2005 Culture independent detection of Sphingomonas sp. EPA 505 related strains in soils contaminated with polycyclic aromatic hydrocarbons (PAHs). Microb Ecol 49: 443 450.
    • (2005) Microb Ecol , vol.49 , pp. 443-450
    • Leys, N.M.1    Ryngaert, A.2    Bastiaens, L.3    Top, E.M.4    Verstraete, W.5    Springael, D.6
  • 21
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu W-T Marsh TL Cheng H Forney LJ 1997 Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. App Environ Microbiol 63: 4516 4522.
    • (1997) App Environ Microbiol , vol.63 , pp. 4516-4522
    • Liu, W.-T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 22
    • 0343503030 scopus 로고    scopus 로고
    • Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores
    • Ludeman H Arth I Liesack W 2000 Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores. Appl Environ Microbiol 66: 754 762.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 754-762
    • Ludeman, H.1    Arth, I.2    Liesack, W.3
  • 23
    • 0034119122 scopus 로고    scopus 로고
    • Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants
    • Lukowl T Dunfield PF Liesack W 2000 Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants. FEMS Microbiol Ecol 32: 241 247.
    • (2000) FEMS Microbiol Ecol , vol.32 , pp. 241-247
    • Lukowl, T.1    Dunfield, P.F.2    Liesack, W.3
  • 24
    • 0002542478 scopus 로고
    • Information theory in ecology
    • Margalef R 1958 Information theory in ecology. Gen Syst 3: 36 71.
    • (1958) Gen Syst , vol.3 , pp. 36-71
    • Margalef, R.1
  • 25
    • 0001823647 scopus 로고
    • Bacterial community fingerprinting of amplified 16S and 16-23S ribosomal DNA gene sequences and restriction endonuclease analysis (ARDRA)
    • Akkermans, A.D.L. van Elsas, J.D. de Bruijn, E.J., eds), pp. Kluwer, Dordrecht.
    • Massol-Deya AA Odelson DA Hickey RF Tiedje JM 1995 Bacterial community fingerprinting of amplified 16S and 16-23S ribosomal DNA gene sequences and restriction endonuclease analysis (ARDRA). Molecular Microbial Ecology Manual, Vol. 3.3.2 Akkermans ADL van Elsas JD de Bruijn EJ, eds), pp. 1 18. Kluwer, Dordrecht.
    • (1995) Molecular Microbial Ecology Manual , vol.332 , pp. 1-18
    • Massol-Deya, A.A.1    Odelson, D.A.2    Hickey, R.F.3    Tiedje, J.M.4
  • 26
    • 0031092932 scopus 로고    scopus 로고
    • Engineers and microbiologists: A future together in bioremediation
    • Maymo-Gatell X Schraa G 1997 Engineers and microbiologists: a future together in bioremediation. Microbiologia 13: 85 87.
    • (1997) Microbiologia , vol.13 , pp. 85-87
    • Maymo-Gatell, X.1    Schraa, G.2
  • 27
    • 0032916067 scopus 로고    scopus 로고
    • Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures
    • McCaig AE Glover LA Prosser JI 1999 Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures. Appl Environ Microbiol 65: 1721 1730.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 1721-1730
    • McCaig, A.E.1    Glover, L.A.2    Prosser, J.I.3
  • 29
    • 15044340738 scopus 로고    scopus 로고
    • Degradation of p-hydroxybenzoate via protocatechuate in Arthrobacter protophormiae RKJ100 and Burkholderia cepacia RKJ200
    • Paul D Chauhan A Pandey G Jain RK 2004 Degradation of p-hydroxybenzoate via protocatechuate in Arthrobacter protophormiae RKJ100 and Burkholderia cepacia RKJ200. Curr Sci 87: 1263 1268.
    • (2004) Curr Sci , vol.87 , pp. 1263-1268
    • Paul, D.1    Chauhan, A.2    Pandey, G.3    Jain, R.K.4
  • 30
    • 0028509254 scopus 로고
    • TREECON for Windows: A software package for the construction and drawing of evolutional trees for the Microsoft Windows Environment
    • Van de Peer Y De Wachter R 1994 TREECON for Windows: a software package for the construction and drawing of evolutional trees for the Microsoft Windows Environment. Comput Appl Biosci 10: 569 570.
    • (1994) Comput Appl Biosci , vol.10 , pp. 569-570
    • Van De Peer, Y.1    De Wachter, R.2
  • 31
    • 18144423861 scopus 로고    scopus 로고
    • Microbial community dynamics in bioaugmented sequencing batch reactors for bromoamine acid removal
    • Qu Y Zhou J Wang J Fu X Xing L 2005 Microbial community dynamics in bioaugmented sequencing batch reactors for bromoamine acid removal. FEMS Microbiol Lett 246: 143 149.
    • (2005) FEMS Microbiol Lett , vol.246 , pp. 143-149
    • Qu, Y.1    Zhou, J.2    Wang, J.3    Fu, X.4    Xing, L.5
  • 32
    • 0034074415 scopus 로고    scopus 로고
    • Genetic diversity and biological control activity of novel species of closely related pseudomonads isolated from wheat filed soils in South Australia
    • Ross IL Alami Y Harvey PR Achouak W Ryder MH 2000 Genetic diversity and biological control activity of novel species of closely related pseudomonads isolated from wheat filed soils in South Australia. Appl Environ Microbiol 66: 1609 1616.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 1609-1616
    • Ross, I.L.1    Alami, Y.2    Harvey, P.R.3    Achouak, W.4    Ryder, M.H.5
  • 33
    • 0037031131 scopus 로고    scopus 로고
    • Characterization of bacterial consortia capable of degrading 4-chlorobenzoate and 4-bromobenzoate under denitrifying conditions
    • Song B Kerkhof LJ Haggblom MM 2002 Characterization of bacterial consortia capable of degrading 4-chlorobenzoate and 4-bromobenzoate under denitrifying conditions. FEMS Microbiol Lett 213: 183 188.
    • (2002) FEMS Microbiol Lett , vol.213 , pp. 183-188
    • Song, B.1    Kerkhof, L.J.2    Haggblom, M.M.3
  • 35
    • 0028028182 scopus 로고
    • A place for DNA-DNA reassociation and 16S rRNA sequence analyses in the present species definition in bacteriology
    • Stackebrandt E Goebel BM 1994 A place for DNA-DNA reassociation and 16S rRNA sequence analyses in the present species definition in bacteriology. Int J Syst Bacteriol 44: 846 849.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 36
    • 0002211974 scopus 로고
    • Partial and complete 16S rDNA sequences, their use in generation of 16S rDNA phylogenetic trees and their implications in molecular ecological studies
    • Akkermans, D.L. van Elsas, J.D. de Brujin, F.J., eds), pp. Kluwer, Dordrecht.
    • Stackebrandt E Rainey FA 1995 Partial and complete 16S rDNA sequences, their use in generation of 16S rDNA phylogenetic trees and their implications in molecular ecological studies. Molecular Microbial Ecology Manual, Vol. 3.1.1 Akkermans DL van Elsas JD de Brujin FJ, eds), pp. 1 17. Kluwer, Dordrecht.
    • (1995) Molecular Microbial Ecology Manual , vol.311 , pp. 1-17
    • Stackebrandt, E.1    Rainey, F.A.2
  • 38
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD Gibson TJ Plewniak F Jeanmougin F Higgins DG 1997 The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24: 4876 4882.
    • (1997) Nucleic Acids Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 39
    • 84972065903 scopus 로고    scopus 로고
    • Rarefaction and rarefiction - The use and abuse of a method in paleoecology
    • Tipper JC 1999 Rarefaction and rarefiction - the use and abuse of a method in paleoecology. Paleobiology 5: 423 434.
    • (1999) Paleobiology , vol.5 , pp. 423-434
    • Tipper, J.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.