-
1
-
-
0030982247
-
A molecular view of microbial diversity and the biosphere
-
Pace NR: A molecular view of microbial diversity and the biosphere. Science 1997, 276:734-740.
-
(1997)
Science
, vol.276
, pp. 734-740
-
-
Pace, N.R.1
-
3
-
-
1842560595
-
Tapping into microbial diversity
-
Keller M, Zengler K: Tapping into microbial diversity. Nat Rev Microbiol 2004, 2:141-150.
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 141-150
-
-
Keller, M.1
Zengler, K.2
-
4
-
-
10344227692
-
Metagenomics: Application of genomics to uncultured microorganisms
-
Handelsman J: Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev 2004, 68:669-685.
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, pp. 669-685
-
-
Handelsman, J.1
-
5
-
-
0034665853
-
Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
-
Beja O, Aravind L, Koonin EV, Suzuki MT, Hadd A, Nguyen LP, Jovanovich SB, Gates CM, Feldman RA, Spudich JL, Spudich EN, DeLong EF: Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science 2000, 289:1902-1906.
-
(2000)
Science
, vol.289
, pp. 1902-1906
-
-
Beja, O.1
Aravind, L.2
Koonin, E.V.3
Suzuki, M.T.4
Hadd, A.5
Nguyen, L.P.6
Jovanovich, S.B.7
Gates, C.M.8
Feldman, R.A.9
Spudich, J.L.10
Spudich, E.N.11
DeLong, E.F.12
-
6
-
-
4444370893
-
Reverse methanogenesis: Testing the hypothesis with environmental genomics
-
Hallam SJ, Putnam N, Preston CM, Detter JC, Rokhsar D, Richardson PM, DeLong EF: Reverse methanogenesis: testing the hypothesis with environmental genomics. Science 2004, 305:1457-1462.
-
(2004)
Science
, vol.305
, pp. 1457-1462
-
-
Hallam, S.J.1
Putnam, N.2
Preston, C.M.3
Detter, J.C.4
Rokhsar, D.5
Richardson, P.M.6
DeLong, E.F.7
-
7
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, Solovyev VV, Rubin EM, Rokhsar DS, Banfield JF: Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 2004, 428:37-43.
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
Richardson, P.M.6
Solovyev, V.V.7
Rubin, E.M.8
Rokhsar, D.S.9
Banfield, J.F.10
-
8
-
-
20244376755
-
Comparative metagenomics of microbial communities 1
-
Tringe SG, von Mering C, Kobayashi A, Salamov AA, Chen K, Chang HW, Podar M, Short JM, Mathur EJ, Detter JC, Bork P, Hugenholtz P, Rubin EM: Comparative metagenomics of microbial communities 1. Science 2005, 308:554-557.
-
(2005)
Science
, vol.308
, pp. 554-557
-
-
Tringe, S.G.1
Von Mering, C.2
Kobayashi, A.3
Salamov, A.A.4
Chen, K.5
Chang, H.W.6
Podar, M.7
Short, J.M.8
Mathur, E.J.9
Detter, J.C.10
Bork, P.11
Hugenholtz, P.12
Rubin, E.M.13
-
9
-
-
4344663593
-
Exploring nitrilase sequence space for enantioselective catalysis
-
Robertson DE, Chaplin JA, DeSantis G, Podar M, Madden M, Chi E, Richardson T, Milan A, Miller M, Weiner DP, Wong K, McQuaid J, Farwell B, Preston LA, Tan X, Snead MA, Keller M, Mathur E, Kretz PL, Burk MJ, Short JM: Exploring nitrilase sequence space for enantioselective catalysis. Appl Environ Microbiol 2004, 70:2429-2436.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 2429-2436
-
-
Robertson, D.E.1
Chaplin, J.A.2
DeSantis, G.3
Podar, M.4
Madden, M.5
Chi, E.6
Richardson, T.7
Milan, A.8
Miller, M.9
Weiner, D.P.10
Wong, K.11
McQuaid, J.12
Farwell, B.13
Preston, L.A.14
Tan, X.15
Snead, M.A.16
Keller, M.17
Mathur, E.18
Kretz, P.L.19
Burk, M.J.20
Short, J.M.21
more..
-
10
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen I, Nelson KE, Nelson W, Fouts DE, Levy S, Knap AH, Lomas MW, Nealson K, White O, Peterson J, Hoffman J, Parsons R, Baden-Tillson H, Pfannkoch C, Rogers YH, Smith HO: Environmental genome shotgun sequencing of the Sargasso Sea. Science 2004, 304:66-74.
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
Wu, D.7
Paulsen, I.8
Nelson, K.E.9
Nelson, W.10
Fouts, D.E.11
Levy, S.12
Knap, A.H.13
Lomas, M.W.14
Nealson, K.15
White, O.16
Peterson, J.17
Hoffman, J.18
Parsons, R.19
Baden-Tillson, H.20
Pfannkoch, C.21
Rogers, Y.H.22
Smith, H.O.23
more..
-
11
-
-
0035859080
-
Proteorhodopsin phototrophy in the ocean
-
Beja O, Spudich EN, Spudich JL, Leclerc M, DeLong EF: Proteorhodopsin phototrophy in the ocean. Nature 2001, 411:786-789.
-
(2001)
Nature
, vol.411
, pp. 786-789
-
-
Beja, O.1
Spudich, E.N.2
Spudich, J.L.3
Leclerc, M.4
DeLong, E.F.5
-
12
-
-
6944240079
-
Darwinian adaptation of proteorhodopsin to different light intensities in the marine environment
-
Bielawski JP, Dunn KA, Sabehi G, Beja O: Darwinian adaptation of proteorhodopsin to different light intensities in the marine environment. Proc Natl Acad Sci U S A 2004, 101:14824-14829.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 14824-14829
-
-
Bielawski, J.P.1
Dunn, K.A.2
Sabehi, G.3
Beja, O.4
-
13
-
-
0038391981
-
Diversification and spectral tuning in marine proteorhodopsins
-
Man D, Wang W, Sabehi G, Aravind L, Post AF, Massana R, Spudich EN, Spudich JL, Beja O: Diversification and spectral tuning in marine proteorhodopsins. EMBO J 2003, 22:1725-1731.
-
(2003)
EMBO J
, vol.22
, pp. 1725-1731
-
-
Man, D.1
Wang, W.2
Sabehi, G.3
Aravind, L.4
Post, A.F.5
Massana, R.6
Spudich, E.N.7
Spudich, J.L.8
Beja, O.9
-
14
-
-
19144366814
-
Metagenomics and industrial applications 1
-
Lorenz P, Eck J: Metagenomics and industrial applications 1. Nat Rev Microbiol 2005, 3:510-516.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 510-516
-
-
Lorenz, P.1
Eck, J.2
-
15
-
-
0001993951
-
The discovery of new biocatalysts from microbial diversity
-
Robertson DE, Mathur E, Swanson RV, Marrs BL, Short JM: The discovery of new biocatalysts from microbial diversity. Society for Industrial Microbiology News 1996, 46:3-8.
-
(1996)
Society for Industrial Microbiology News
, vol.46
, pp. 3-8
-
-
Robertson, D.E.1
Mathur, E.2
Swanson, R.V.3
Marrs, B.L.4
Short, J.M.5
-
16
-
-
0037805644
-
Biotechnological prospects from metagenomics
-
Schloss PD, Handelsman J: Biotechnological prospects from metagenomics. Curr Opin Biotechnol 2003, 14:303-310.
-
(2003)
Curr Opin Biotechnol
, vol.14
, pp. 303-310
-
-
Schloss, P.D.1
Handelsman, J.2
-
17
-
-
0031300142
-
Recombinant approaches for accessing biodiversity
-
Short JM: Recombinant approaches for accessing biodiversity. Nat Biotechnol 1997, 15:1322-1323.
-
(1997)
Nat Biotechnol
, vol.15
, pp. 1322-1323
-
-
Short, J.M.1
-
18
-
-
0036909261
-
Catalysis in the nitrilase superfamily
-
Brenner C: Catalysis in the nitrilase superfamily. Curr Opin Struct Biol 2002, 12:775-782.
-
(2002)
Curr Opin Struct Biol
, vol.12
, pp. 775-782
-
-
Brenner, C.1
-
19
-
-
0345167149
-
The nitrilase family of CN hydrolysing enzymes - A comparative study
-
O'Reilly C, Turner PD: The nitrilase family of CN hydrolysing enzymes - a comparative study. J Appl Microbiol 2003, 95:1161-1174.
-
(2003)
J Appl Microbiol
, vol.95
, pp. 1161-1174
-
-
O'Reilly, C.1
Turner, P.D.2
-
20
-
-
0035114118
-
The nitrilase superfamily: Classification, structure and function
-
reviews0001.1-0001.9
-
Pace HC, Brenner C: The nitrilase superfamily: classification, structure and function. Genome Biol 2001, 2:reviews0001.1-0001.9.
-
(2001)
Genome Biol
, vol.2
-
-
Pace, H.C.1
Brenner, C.2
-
21
-
-
0034306448
-
Gene context conservation of a higher order than operons
-
Lathe WCIII, Snel B, Bork P: Gene context conservation of a higher order than operons. Trends Biochem Sci 2000, 25:474-479.
-
(2000)
Trends Biochem Sci
, vol.25
, pp. 474-479
-
-
Lathe III, W.C.1
Snel, B.2
Bork, P.3
-
22
-
-
0037052935
-
Connected gene neighborhoods in prokaryotic genomes
-
Rogozin IB, Makarova KS, Murvai J, Czabarka E, Wolf YI, Tatusov RL, Szekely LA, Koonin EV: Connected gene neighborhoods in prokaryotic genomes. Nucleic Acids Res 2002, 30:2212-2223.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 2212-2223
-
-
Rogozin, I.B.1
Makarova, K.S.2
Murvai, J.3
Czabarka, E.4
Wolf, Y.I.5
Tatusov, R.L.6
Szekely, L.A.7
Koonin, E.V.8
-
23
-
-
0242440314
-
Gene organization: Selection, selfishness, and serendipity
-
Lawrence JG: Gene organization: selection, selfishness, and serendipity. Annu Rev Microbiol 2003, 57:419-440.
-
(2003)
Annu Rev Microbiol
, vol.57
, pp. 419-440
-
-
Lawrence, J.G.1
-
24
-
-
13944268797
-
A novel method for accurate operon predictions in all sequenced prokaryotes 3
-
Price MN, Huang KH, Alm EJ, Arkin AP: A novel method for accurate operon predictions in all sequenced prokaryotes 3. Nucleic Acids Res 2005, 33:880-892.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 880-892
-
-
Price, M.N.1
Huang, K.H.2
Alm, E.J.3
Arkin, A.P.4
-
25
-
-
0035798406
-
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
-
Gough J, Karplus K, Hughey R, Chothia C: Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. J Mol Biol 2001, 313:903-919.
-
(2001)
J Mol Biol
, vol.313
, pp. 903-919
-
-
Gough, J.1
Karplus, K.2
Hughey, R.3
Chothia, C.4
-
26
-
-
0035282866
-
Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: Functional characterization using new analysis and information visualization methods
-
Sofia HJ, Chen G, Hetzler BG, Reyes-Spindola JF, Miller NE: Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods. Nucleic Acids Res 2001, 29:1097-1106.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 1097-1106
-
-
Sofia, H.J.1
Chen, G.2
Hetzler, B.G.3
Reyes-Spindola, J.F.4
Miller, N.E.5
-
27
-
-
0033135707
-
Crystal structure of an aminoglycoside 6′-N-acetyltransferase: Defining the GCN5-related N-acetyltransferase superfamily fold
-
Wybenga-Groot LE, Draker K, Wright GD, Berghuis AM: Crystal structure of an aminoglycoside 6′-N-acetyltransferase: defining the GCN5-related N-acetyltransferase superfamily fold. Structure Fold Des 1999, 7:497-507.
-
(1999)
Structure Fold Des
, vol.7
, pp. 497-507
-
-
Wybenga-Groot, L.E.1
Draker, K.2
Wright, G.D.3
Berghuis, A.M.4
-
28
-
-
0029295437
-
The MarR repressor of the multiple antibiotic resistance (mar) operon in Escherichia coli: Prototypic member of a family of bacterial regulatory proteins involved in sensing phenolic compounds
-
Sulavik MC, Gambino LF, Miller PF: The MarR repressor of the multiple antibiotic resistance (mar) operon in Escherichia coli: prototypic member of a family of bacterial regulatory proteins involved in sensing phenolic compounds. Mol Med 1995, 1:436-446.
-
(1995)
Mol Med
, vol.1
, pp. 436-446
-
-
Sulavik, M.C.1
Gambino, L.F.2
Miller, P.F.3
-
29
-
-
0034780878
-
Epimerases: Structure, function and mechanism
-
Allard ST, Giraud MF, Naismith JH: Epimerases: structure, function and mechanism. Cell Mol Life Sci 2001, 58:1650-1665.
-
(2001)
Cell Mol Life Sci
, vol.58
, pp. 1650-1665
-
-
Allard, S.T.1
Giraud, M.F.2
Naismith, J.H.3
-
30
-
-
0036005636
-
Understanding nature's strategies for enzymecatalyzed racemization and epimerization
-
Tanner ME: Understanding nature's strategies for enzymecatalyzed racemization and epimerization. Acc Chem Res 2002, 35:237-246.
-
(2002)
Acc Chem Res
, vol.35
, pp. 237-246
-
-
Tanner, M.E.1
-
31
-
-
0034534035
-
Epoxide hydrolases: Biochemistry and molecular biology
-
Fretland AJ, Omiecinski CJ: Epoxide hydrolases: biochemistry and molecular biology. Chem Biol Interact 2000, 129:41-59.
-
(2000)
Chem Biol Interact
, vol.129
, pp. 41-59
-
-
Fretland, A.J.1
Omiecinski, C.J.2
-
32
-
-
0033639150
-
Statistical methods for detecting molecular adaptation
-
Yang Z, Bielawski JP: Statistical methods for detecting molecular adaptation. Trends Ecol Evol 2000, 15:496-503.
-
(2000)
Trends Ecol Evol
, vol.15
, pp. 496-503
-
-
Yang, Z.1
Bielawski, J.P.2
-
33
-
-
0036889183
-
Inference of selection from multiple species alignments
-
Yang Z: Inference of selection from multiple species alignments. Curr Opin Genet Dev 2002, 12:688-694.
-
(2002)
Curr Opin Genet Dev
, vol.12
, pp. 688-694
-
-
Yang, Z.1
-
34
-
-
0037270595
-
Maximum likelihood methods for detecting adaptive evolution after gene duplication
-
Bielawski JP, Yang Z: Maximum likelihood methods for detecting adaptive evolution after gene duplication. J Struct Funct Genomics 2003, 3:201-212.
-
(2003)
J Struct Funct Genomics
, vol.3
, pp. 201-212
-
-
Bielawski, J.P.1
Yang, Z.2
-
35
-
-
0032584099
-
Positive Darwinian selection after gene duplication in primate ribonuclease genes
-
Zhang J, Rosenberg HF, Nei M: Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proc Natl Acad Sci U S A 1998, 95:3708-3713.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 3708-3713
-
-
Zhang, J.1
Rosenberg, H.F.2
Nei, M.3
-
36
-
-
0028024626
-
A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome
-
Muse SV, Gaut BS: A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome. Mol Biol Evol 1994, 11:715-724.
-
(1994)
Mol Biol Evol
, vol.11
, pp. 715-724
-
-
Muse, S.V.1
Gaut, B.S.2
-
38
-
-
0019255001
-
Selective neutrality of 6PGD allozymes in E. coli and the effects of genetic background
-
Dykhuizen D, Hartl DL: Selective neutrality of 6PGD allozymes in E. coli and the effects of genetic background. Genetics 1980, 96:801-817.
-
(1980)
Genetics
, vol.96
, pp. 801-817
-
-
Dykhuizen, D.1
Hartl, D.L.2
-
39
-
-
0344824014
-
Convergent neofunctionalization by positive Darwinian selection after ancient recurrent duplications of the xanthine dehydrogenase gene
-
Rodriguez-Trelles F, Tarrio R, Ayala FJ: Convergent neofunctionalization by positive Darwinian selection after ancient recurrent duplications of the xanthine dehydrogenase gene. Proc Natl Acad Sci U S A 2003, 100:13413-13417.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 13413-13417
-
-
Rodriguez-Trelles, F.1
Tarrio, R.2
Ayala, F.J.3
-
40
-
-
0037500141
-
Evolution by gene duplication: An update
-
Zhang J: Evolution by gene duplication: an update. Trends Ecol Evol 2003, 18:292-298.
-
(2003)
Trends Ecol Evol
, vol.18
, pp. 292-298
-
-
Zhang, J.1
-
41
-
-
0036855372
-
Simulation study of the reliability and robustness of the statistical methods for detecting positive selection at single amino acid sites
-
Suzuki Y, Nei M: Simulation study of the reliability and robustness of the statistical methods for detecting positive selection at single amino acid sites. Mol Biol Evol 2002, 19:1865-1869.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 1865-1869
-
-
Suzuki, Y.1
Nei, M.2
-
42
-
-
1942533483
-
False positive selection identified by ML-based methods: Examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotropic virus
-
Suzuki Y, Nei M: False positive selection identified by ML-based methods: examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotropic virus. Mol Biol Evol 2004, 21:914-921.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 914-921
-
-
Suzuki, Y.1
Nei, M.2
-
43
-
-
8544225780
-
Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites
-
Wong WS, Yang Z, Goldman N, Nielsen R: Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites. Genetics 2004, 168:1041-1051.
-
(2004)
Genetics
, vol.168
, pp. 1041-1051
-
-
Wong, W.S.1
Yang, Z.2
Goldman, N.3
Nielsen, R.4
-
44
-
-
0034097381
-
Codon-substitution models for heterogeneous selection pressure at amino acid sites
-
Yang Z, Nielsen R, Goldman N, Pedersen AM: Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 2000, 155:431-449.
-
(2000)
Genetics
, vol.155
, pp. 431-449
-
-
Yang, Z.1
Nielsen, R.2
Goldman, N.3
Pedersen, A.M.4
-
45
-
-
0030007094
-
Large-scale search for genes on which positive selection may operate 5
-
Endo T, Ikeo K, Gojobori T: Large-scale search for genes on which positive selection may operate 5. Mol Biol Evol 1996, 13:685-690.
-
(1996)
Mol Biol Evol
, vol.13
, pp. 685-690
-
-
Endo, T.1
Ikeo, K.2
Gojobori, T.3
-
46
-
-
0036270185
-
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
-
Yang Z, Nielsen R: Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol Biol Evol 2002, 19:908-917.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 908-917
-
-
Yang, Z.1
Nielsen, R.2
-
47
-
-
0343006848
-
Crystal structure of the worm NitFhit Rosetta Stone protein reveals a Nit tetramer binding two Fhit dimers
-
Pace HC, Hodawadekar SC, Draganescu A, Huang J, Bieganowski P, Pekarsky Y, Croce CM, Brenner C: Crystal structure of the worm NitFhit Rosetta Stone protein reveals a Nit tetramer binding two Fhit dimers. Curr Biol 2000, 10:907-917.
-
(2000)
Curr Biol
, vol.10
, pp. 907-917
-
-
Pace, H.C.1
Hodawadekar, S.C.2
Draganescu, A.3
Huang, J.4
Bieganowski, P.5
Pekarsky, Y.6
Croce, C.M.7
Brenner, C.8
-
48
-
-
0035895433
-
Crystal structure and site-directed mutagenesis studies of N-carbamoyl-D-aminoacid amidohydrolase from Agrobacterium radiobacter reveals a homotetramer and insight into a catalytic cleft
-
Wang WC, Hsu WH, Chien FT, Chen CY: Crystal structure and site-directed mutagenesis studies of N-carbamoyl-D-aminoacid amidohydrolase from Agrobacterium radiobacter reveals a homotetramer and insight into a catalytic cleft. J Mol Biol 2001, 306:251-261.
-
(2001)
J Mol Biol
, vol.306
, pp. 251-261
-
-
Wang, W.C.1
Hsu, W.H.2
Chien, F.T.3
Chen, C.Y.4
-
49
-
-
0033055062
-
The use of gene clusters to infer functional coupling
-
Overbeek R, Fonstein M, D'Souza M, Pusch GD, Maltsev N: The use of gene clusters to infer functional coupling. Proc Natl Acad Sci U S A 1999, 96:2896-2901.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 2896-2901
-
-
Overbeek, R.1
Fonstein, M.2
D'Souza, M.3
Pusch, G.D.4
Maltsev, N.5
-
50
-
-
0033058895
-
Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes
-
Itoh T, Takemoto K, Mori H, Gojobori T: Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes. Mol Biol Evol 1999, 16:332-346.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 332-346
-
-
Itoh, T.1
Takemoto, K.2
Mori, H.3
Gojobori, T.4
-
51
-
-
0035051602
-
A comparative genomics approach to prediction of new members of regulons
-
Tan K, Moreno-Hagelsieb G, Collado-Vides J, Stormo GD: A comparative genomics approach to prediction of new members of regulons. Genome Res 2001, 11:566-584.
-
(2001)
Genome Res
, vol.11
, pp. 566-584
-
-
Tan, K.1
Moreno-Hagelsieb, G.2
Collado-Vides, J.3
Stormo, G.D.4
-
52
-
-
0037398732
-
Missing genes in metabolic pathways: A comparative genomics approach
-
Osterman A, Overbeek R: Missing genes in metabolic pathways: a comparative genomics approach. Curr Opin Chem Biol 2003, 7:238-251.
-
(2003)
Curr Opin Chem Biol
, vol.7
, pp. 238-251
-
-
Osterman, A.1
Overbeek, R.2
-
53
-
-
0010414313
-
Evolution of gene order conservation in prokaryotes
-
Research0020
-
Tamames J: Evolution of gene order conservation in prokaryotes. Genome Biol 2001, 2(6):Research0020.
-
(2001)
Genome Biol
, vol.2
, Issue.6
-
-
Tamames, J.1
-
54
-
-
0043011009
-
Comparative genomics of Archaea: How much have we learned in six years, and what's next?
-
Makarova KS, Koonin EV: Comparative genomics of Archaea: how much have we learned in six years, and what's next? Genome Biol 2003, 4:115.
-
(2003)
Genome Biol
, vol.4
, pp. 115
-
-
Makarova, K.S.1
Koonin, E.V.2
-
55
-
-
0037397439
-
Definitions of enzyme function for the structural genomics era
-
Babbitt PC: Definitions of enzyme function for the structural genomics era. Curr Opin Chem Biol 2003, 7:230-237.
-
(2003)
Curr Opin Chem Biol
, vol.7
, pp. 230-237
-
-
Babbitt, P.C.1
-
56
-
-
4344685409
-
Microbial population genomics and ecology: The road ahead
-
DeLong EF: Microbial population genomics and ecology: the road ahead. Environ Microbiol 2004, 6:875-878.
-
(2004)
Environ Microbiol
, vol.6
, pp. 875-878
-
-
DeLong, E.F.1
-
57
-
-
1342300599
-
Environmental genomics, the big picture
-
Rodriguez-Valera F: Environmental genomics, the big picture. FEMS Microbiol Lett 2004, 231:153-158.
-
(2004)
FEMS Microbiol Lett
, vol.231
, pp. 153-158
-
-
Rodriguez-Valera, F.1
-
58
-
-
24344473498
-
-
The Institute for Genome Research 2005 [http://www.tigr.org].
-
(2005)
-
-
-
59
-
-
24344478308
-
-
DOE Joint Genome Institute 2005 [http://www.jgi.doe.gov/].
-
(2005)
-
-
-
60
-
-
24344497598
-
-
Hall T: BioEdit. 2005 [http://www.mbio.ncsu.edu/BioEdit/bioedit.html].
-
(2005)
BioEdit
-
-
Hall, T.1
-
61
-
-
0000122573
-
PHYLIP - Phylogeny Inference Package (Version3.2)
-
Felsenstein J: PHYLIP - Phylogeny Inference Package (Version3.2). Cladistics 1989, 5:164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
62
-
-
0036205377
-
TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
-
Schmidt HA, Strimmer K, Vingron M, von Haeseler A: TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 2002, 18:502-504.
-
(2002)
Bioinformatics
, vol.18
, pp. 502-504
-
-
Schmidt, H.A.1
Strimmer, K.2
Vingron, M.3
Von Haeseler, A.4
-
64
-
-
0031773680
-
MODELTEST: Testing the model of DNA substitution
-
Posada D, Crandall KA: MODELTEST: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
65
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang Z: PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 1997, 13:555-556.
-
(1997)
Comput Appl Biosci
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
66
-
-
0031897964
-
Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
-
Yang Z: Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol Biol Evol 1998, 15:568-573.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 568-573
-
-
Yang, Z.1
|