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Volumn 34, Issue 9, 2006, Pages 2782-2790

Multiple physical forms of excised group II intron RNAs in wheat mitochondria

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE; NUCLEOTIDE; PLANT RNA; RIBONUCLEASE H; CYTOCHROME C OXIDASE; CYTOCHROME C OXIDASE SUBUNIT II; MITOCHONDRIAL PROTEIN; RNA; RNA, MITOCHONDRIAL; VEGETABLE PROTEIN;

EID: 33744817387     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl328     Document Type: Article
Times cited : (67)

References (40)
  • 1
    • 0035368207 scopus 로고    scopus 로고
    • The ins and outs of group II introns
    • Bonen,L. and Vogel,J. (2001) The ins and outs of group II introns. Trends Genet., 17, 322-331.
    • (2001) Trends Genet. , vol.17 , pp. 322-331
    • Bonen, L.1    Vogel, J.2
  • 2
    • 4744343662 scopus 로고    scopus 로고
    • The mitochondrial DNA of land plants: Peculiarities in phylogenetic perspective
    • Knoop,V. (2004) The mitochondrial DNA of land plants: Peculiarities in phylogenetic perspective. Curr. Genet., 46, 123-139.
    • (2004) Curr. Genet. , vol.46 , pp. 123-139
    • Knoop, V.1
  • 3
    • 0029066770 scopus 로고
    • Structure and activities of group II intron
    • Michel,F. and Ferat,J.L. (1995) Structure and activities of group II intron. Annu. Rev. Biochem., 64, 435-461.
    • (1995) Annu. Rev. Biochem. , vol.64 , pp. 435-461
    • Michel, F.1    Ferat, J.L.2
  • 5
    • 1342263796 scopus 로고    scopus 로고
    • Recent horizontal intron transfer to a chloroplast genome
    • Sheveleva,E.V. and Hallick,R.B. (2004) Recent horizontal intron transfer to a chloroplast genome. Nucleic Acids Res., 32, 803-810.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 803-810
    • Sheveleva, E.V.1    Hallick, R.B.2
  • 6
    • 3042625932 scopus 로고    scopus 로고
    • A horizontally acquired group II intron in the chloroplast psbA gene of a psychrophilic Chlamydomonas: In vitro self-splicing and genetic evidence for maturase activity
    • Odom,O.W., Shenkenberg,D.L., Garcia,J.A. and Herrin,D.L. (2004) A horizontally acquired group II intron in the chloroplast psbA gene of a psychrophilic Chlamydomonas: In vitro self-splicing and genetic evidence for maturase activity. RNA, 10, 1097-1107.
    • (2004) RNA , vol.10 , pp. 1097-1107
    • Odom, O.W.1    Shenkenberg, D.L.2    Garcia, J.A.3    Herrin, D.L.4
  • 7
    • 31044440894 scopus 로고    scopus 로고
    • Structure of a self-splicing group II intron catalytic effector domain 5: Parallels with spliceosomal U6 RNA
    • Seetharaman,M., Eldho,N.V., Padgett,R.A. and Dayie,K.T. (2006) Structure of a self-splicing group II intron catalytic effector domain 5: parallels with spliceosomal U6 RNA. RNA, 12, 235-247.
    • (2006) RNA , vol.12 , pp. 235-247
    • Seetharaman, M.1    Eldho, N.V.2    Padgett, R.A.3    Dayie, K.T.4
  • 8
    • 0038049910 scopus 로고    scopus 로고
    • Group II introns: Structure and catalytic versatility of large natural ribozymes
    • Lehmann,K. and Schmidt,U. (2003) Group II introns: Structure and catalytic versatility of large natural ribozymes. Crit. Rev. Biochem. Mol. Biol., 38, 249-303.
    • (2003) Crit. Rev. Biochem. Mol. Biol. , vol.38 , pp. 249-303
    • Lehmann, K.1    Schmidt, U.2
  • 9
    • 0035803594 scopus 로고    scopus 로고
    • Control of branch-site choice by a group II intron
    • Chu,V.T., Adamidi,C., Liu,Q., Perlman,P.S. and Pyle,A.M. (2001) Control of branch-site choice by a group II intron. EMBO J., 20, 6866-6876.
    • (2001) EMBO J. , vol.20 , pp. 6866-6876
    • Chu, V.T.1    Adamidi, C.2    Liu, Q.3    Perlman, P.S.4    Pyle, A.M.5
  • 10
    • 0034910710 scopus 로고    scopus 로고
    • Coevolution of group II intron RNA structures with their intron-encoded reverse transcriptases
    • Toor,N., Hausner,G. and Zimmerly,S. (2001) Coevolution of group II intron RNA structures with their intron-encoded reverse transcriptases. RNA, 7, 1142-1152.
    • (2001) RNA , vol.7 , pp. 1142-1152
    • Toor, N.1    Hausner, G.2    Zimmerly, S.3
  • 11
    • 0032568012 scopus 로고    scopus 로고
    • Group II intron splicing in vivo by first-step hydrolysis
    • Podar,M., Chu,V.T., Pyle,A.M. and Perlman,P.S. (1998) Group II intron splicing in vivo by first-step hydrolysis. Nature, 391, 915-918.
    • (1998) Nature , vol.391 , pp. 915-918
    • Podar, M.1    Chu, V.T.2    Pyle, A.M.3    Perlman, P.S.4
  • 12
    • 0029818398 scopus 로고    scopus 로고
    • Length changes in the joining segment between domains 5 and 6 of a group II intron inhibit self-splicing and alter 3′ splice site selection
    • Boulanger,S.C., Faix,P.H., Yang,H., Zhuo,J., Franzen,J.S., Peebles,C.L. and Perlman,P.S. (1996) Length changes in the joining segment between domains 5 and 6 of a group II intron inhibit self-splicing and alter 3′ splice site selection. Mol. Cell. Biol., 16, 5896-5904.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 5896-5904
    • Boulanger, S.C.1    Faix, P.H.2    Yang, H.3    Zhuo, J.4    Franzen, J.S.5    Peebles, C.L.6    Perlman, P.S.7
  • 13
    • 0037099679 scopus 로고    scopus 로고
    • Lariat formation and a hydrolytic pathway in plant chloroplast group II intron splicing
    • Vogel,J. and Borner,T. (2002) Lariat formation and a hydrolytic pathway in plant chloroplast group II intron splicing. EMBO J., 21, 3794-3803.
    • (2002) EMBO J. , vol.21 , pp. 3794-3803
    • Vogel, J.1    Borner, T.2
  • 14
    • 0036007977 scopus 로고    scopus 로고
    • RNA splicing in higher plant mitochondria: Determination of functional elements in group II intron from chimeric cox II gene in electroporated wheat
    • Farre,J.C. and Araya,A. (2002) RNA splicing in higher plant mitochondria: Determination of functional elements in group II intron from chimeric cox II gene in electroporated wheat. Plant J., 29, 203-213.
    • (2002) Plant J. , vol.29 , pp. 203-213
    • Farre, J.C.1    Araya, A.2
  • 15
    • 3042698703 scopus 로고    scopus 로고
    • Distribution of introns in the mitochondrial gene nad1 in land plants: Phylogenetic and molecular evolutionary implications
    • Dombrovska,O. and Qiu,Y.L. (2004) Distribution of introns in the mitochondrial gene nad1 in land plants: Phylogenetic and molecular evolutionary implications. Mol. Phylogenet. Evol., 32, 246-263.
    • (2004) Mol. Phylogenet. Evol. , vol.32 , pp. 246-263
    • Dombrovska, O.1    Qiu, Y.L.2
  • 16
    • 11244316583 scopus 로고    scopus 로고
    • Variation in mitochondrial transcript profiles of protein-coding genes during early germination and seedling development in wheat
    • Li-Pook-Than,J., Carrillo,C. and Bonen,L. (2004) Variation in mitochondrial transcript profiles of protein-coding genes during early germination and seedling development in wheat. Curr. Genet., 46, 374-380.
    • (2004) Curr. Genet. , vol.46 , pp. 374-380
    • Li-Pook-Than, J.1    Carrillo, C.2    Bonen, L.3
  • 17
    • 0030786461 scopus 로고    scopus 로고
    • Precise branch point mapping and quantification of splicing intermediates
    • Vogel,J., Hess,W.R. and Borner,T. (1997) Precise branch point mapping and quantification of splicing intermediates. Nucleic Acids Res., 25, 2030-2031.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 2030-2031
    • Vogel, J.1    Hess, W.R.2    Borner, T.3
  • 18
    • 0035257171 scopus 로고    scopus 로고
    • Complete 5′ and 3′ end maturation of group II intron-containing tRNA precursors
    • Vogel,J. and Hess,W.R. (2001) Complete 5′ and 3′ end maturation of group II intron-containing tRNA precursors. RNA, 7, 285-292.
    • (2001) RNA , vol.7 , pp. 285-292
    • Vogel, J.1    Hess, W.R.2
  • 20
    • 0028895665 scopus 로고
    • Determination of the poly(A) tail lengths of a single mRNA species in total hepatic RNA
    • Zangar,R.C., Hernandez,M., Kocarek,T.A. and Novak,R.F. (1995) Determination of the poly(A) tail lengths of a single mRNA species in total hepatic RNA. Biotechniques, 18, 465-469.
    • (1995) Biotechniques , vol.18 , pp. 465-469
    • Zangar, R.C.1    Hernandez, M.2    Kocarek, T.A.3    Novak, R.F.4
  • 21
    • 18744427597 scopus 로고    scopus 로고
    • Group II intron splicing in chloroplasts: Identification of mutations determining intron stability and fate of exon RNA
    • Hollander,V. and Kuck,U. (1999) Group II intron splicing in chloroplasts: Identification of mutations determining intron stability and fate of exon RNA. Nucleic Acids Res., 27, 2345-2353.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 2345-2353
    • Hollander, V.1    Kuck, U.2
  • 22
    • 0035145548 scopus 로고    scopus 로고
    • Variation in sequence and RNA editing within core domains of mitochondrial group II introns among plants
    • Carrillo,C., Chapedelaine,Y. and Bonen,L. (2001) Variation in sequence and RNA editing within core domains of mitochondrial group II introns among plants. Mol. Gen. Genet., 264, 595-603.
    • (2001) Mol. Gen. Genet. , vol.264 , pp. 595-603
    • Carrillo, C.1    Chapedelaine, Y.2    Bonen, L.3
  • 23
    • 0030736590 scopus 로고    scopus 로고
    • RNA editing status of nad7 intron domains in wheat mitochondria
    • Carrillo,C. and Bonen,L. (1997) RNA editing status of nad7 intron domains in wheat mitochondria. Nucleic Acids Res., 25, 403-409.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 403-409
    • Carrillo, C.1    Bonen, L.2
  • 24
    • 0023462635 scopus 로고
    • Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs
    • Wolfe,K.H., Li,W.H. and Sharp,P.M. (1987) Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc. Natl Acad. Sci. USA, 84, 9054-9058.
    • (1987) Proc. Natl Acad. Sci. USA , vol.84 , pp. 9054-9058
    • Wolfe, K.H.1    Li, W.H.2    Sharp, P.M.3
  • 25
    • 0027509319 scopus 로고
    • Characterization of the S7 ribosomal protein gene in wheat mitochondria
    • Zhuo,D. and Bonen,L. (1993) Characterization of the S7 ribosomal protein gene in wheat mitochondria. Mol. Gen. Genet., 236, 395-401.
    • (1993) Mol. Gen. Genet. , vol.236 , pp. 395-401
    • Zhuo, D.1    Bonen, L.2
  • 26
    • 0025911443 scopus 로고
    • Splicing of the Petunia cytochrome oxidase subunit II intron
    • Pruitt,K.D. and Hanson,M.R. (1991) Splicing of the Petunia cytochrome oxidase subunit II intron. Curr. Genet., 19, 191-197.
    • (1991) Curr. Genet. , vol.19 , pp. 191-197
    • Pruitt, K.D.1    Hanson, M.R.2
  • 27
    • 33745593608 scopus 로고    scopus 로고
    • RNA splicing and editing of group II introns in flowering plant mitochondria
    • Ph.D. thesis, University of Ottawa, Ottawa, Canada
    • Carrillo,C. (2001) RNA splicing and editing of group II introns in flowering plant mitochondria. Ph.D. thesis, University of Ottawa, Ottawa, Canada.
    • (2001)
    • Carrillo, C.1
  • 29
    • 0035094207 scopus 로고    scopus 로고
    • Mutually exclusive distribution of IS1548 and GBSi1, an active group II intron identified in human isolates of group B Streptococci
    • Grandlund,M., Michel,F. and Norgren,M. (2001) Mutually exclusive distribution of IS1548 and GBSi1, an active group II intron identified in human isolates of group B Streptococci. J. Bacteriol., 183, 2560-2569.
    • (2001) J. Bacteriol. , vol.183 , pp. 2560-2569
    • Grandlund, M.1    Michel, F.2    Norgren, M.3
  • 30
    • 22544474374 scopus 로고    scopus 로고
    • Unusual group II introns in bacteria of the Bacillus cereus group
    • Tourasse,N.J., Stabell,F.B., Reiter,L. and Kolsto,A.B. (2005) Unusual group II introns in bacteria of the Bacillus cereus group. J. Bacteriol., 187, 5437-5541.
    • (2005) J. Bacteriol. , vol.187 , pp. 5437-5541
    • Tourasse, N.J.1    Stabell, F.B.2    Reiter, L.3    Kolsto, A.B.4
  • 31
    • 1942533455 scopus 로고    scopus 로고
    • Principles of 3′ splice site selection and alternative splicing for an unusual group II intron from Bacillus anthracis
    • Robart,A.R., Montgomery,N.K., Smith,K.L. and Zimmerly,S. (2004) Principles of 3′ splice site selection and alternative splicing for an unusual group II intron from Bacillus anthracis. RNA, 10, 854-862.
    • (2004) RNA , vol.10 , pp. 854-862
    • Robart, A.R.1    Montgomery, N.K.2    Smith, K.L.3    Zimmerly, S.4
  • 32
    • 0030792180 scopus 로고    scopus 로고
    • 3′-Inverted repeats in plant mitochondrial mRNAs are processing signals rather than transcription terminators
    • Dombrowski,S., Brennicke,A. and Binder,S. (1997) 3′-Inverted repeats in plant mitochondrial mRNAs are processing signals rather than transcription terminators. EMBO J., 16, 5069-5076.
    • (1997) EMBO J. , vol.16 , pp. 5069-5076
    • Dombrowski, S.1    Brennicke, A.2    Binder, S.3
  • 34
    • 1342306403 scopus 로고    scopus 로고
    • Surprising features of plastid ndhD transcripts: Addition of non-encoded nucleotides and polysome association of mRNAs with an unedited start codon
    • Zandueta-Criado,A. and Bock,R. (2004) Surprising features of plastid ndhD transcripts: Addition of non-encoded nucleotides and polysome association of mRNAs with an unedited start codon. Nucleic Acids Res., 32, 542-550.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 542-550
    • Zandueta-Criado, A.1    Bock, R.2
  • 36
    • 0031789680 scopus 로고    scopus 로고
    • Trans-splicing group II introns in plant mitochondria: The complete set of cis-arranged homologs in fersn, fern allies, and a hornwort
    • Malek,O. and Knoop,V. (1998) trans-splicing group II introns in plant mitochondria: The complete set of cis-arranged homologs in fersn, fern allies, and a hornwort. RNA, 4, 1599-1609.
    • (1998) RNA , vol.4 , pp. 1599-1609
    • Malek, O.1    Knoop, V.2
  • 37
    • 0031791953 scopus 로고    scopus 로고
    • The cox2 locus of the primitive angiosperm plant Acorus calamus: Molecular structure, transcript processing and RNA editing
    • Albertazzi,F.J., Kudla,J. and Bock,R. (1998) The cox2 locus of the primitive angiosperm plant Acorus calamus: Molecular structure, transcript processing and RNA editing. Mol. Gen. Genet., 259, 591-600.
    • (1998) Mol. Gen. Genet. , vol.259 , pp. 591-600
    • Albertazzi, F.J.1    Kudla, J.2    Bock, R.3
  • 38
    • 0033179937 scopus 로고    scopus 로고
    • The mat-r open reading frame is transcribed from a non-canonical promoter and contains an internal promoter to co-transcribe exons nad1e and nad5III in wheat mitochondria
    • Farré,J.C. and Araya,A. (1999) The mat-r open reading frame is transcribed from a non-canonical promoter and contains an internal promoter to co-transcribe exons nad1e and nad5III in wheat mitochondria. Plant Mol. Biol., 40, 959-967.
    • (1999) Plant Mol. Biol. , vol.40 , pp. 959-967
    • Farré, J.C.1    Araya, A.2
  • 39
    • 0025864763 scopus 로고
    • Trans splicing in Oenothera mitochondria: Nad1 mNAs are edited in exon and trans-splicing group II intron sequences
    • Wissinger,B., Schuster,W. and Brennicke,A. (1991) Trans splicing in Oenothera mitochondria: Nad1 mNAs are edited in exon and trans-splicing group II intron sequences. Cell, 65, 473-482.
    • (1991) Cell , vol.65 , pp. 473-482
    • Wissinger, B.1    Schuster, W.2    Brennicke, A.3


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