-
1
-
-
0029670279
-
Catalytic role of 2′-hydroxyl groups within a group II intron active site
-
Abramovitz, D. L., R. A. Friedman, and A. M. Pyle. 1996. Catalytic role of 2′-hydroxyl groups within a group II intron active site. Science 271:1410-1413.
-
(1996)
Science
, vol.271
, pp. 1410-1413
-
-
Abramovitz, D.L.1
Friedman, R.A.2
Pyle, A.M.3
-
4
-
-
0029055177
-
Studies of point mutants define essential nucleotides in the domain 5 substructure of a group II intron
-
Boulanger, S. C., S. M. Belcher, U. Schmidt, S. D. Dib-Hajj, T. Schmidt, and P. S. Perlman. 1995. Studies of point mutants define essential nucleotides in the domain 5 substructure of a group II intron. Mol. Cell. Biol. 15:4479-4488.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 4479-4488
-
-
Boulanger, S.C.1
Belcher, S.M.2
Schmidt, U.3
Dib-Hajj, S.D.4
Schmidt, T.5
Perlman, P.S.6
-
5
-
-
0029873586
-
Transformation of S. cerevisiae mitochondria using the biolistic gun
-
Butow, R. A., S. M. Belcher, J. V. Moran, R. M. Henke, and P. S. Perlman. 1996. Transformation of S. cerevisiae mitochondria using the biolistic gun. Methods Enzymol. 264:265-278.
-
(1996)
Methods Enzymol.
, vol.264
, pp. 265-278
-
-
Butow, R.A.1
Belcher, S.M.2
Moran, J.V.3
Henke, R.M.4
Perlman, P.S.5
-
6
-
-
0027451435
-
Interaction of intronic boundaries is required for the second splicing step efficiency of a group II intron
-
Chanfreau, G., and A. Jacquier. 1993. Interaction of intronic boundaries is required for the second splicing step efficiency of a group II intron. EMBO J. 12:5173-5180.
-
(1993)
EMBO J.
, vol.12
, pp. 5173-5180
-
-
Chanfreau, G.1
Jacquier, A.2
-
7
-
-
0028569768
-
Catalytic site components common to both splicing steps of a group II intron
-
Chanfreau, G., and A. Jacquier. 1994. Catalytic site components common to both splicing steps of a group II intron. Science 266:1383-1387.
-
(1994)
Science
, vol.266
, pp. 1383-1387
-
-
Chanfreau, G.1
Jacquier, A.2
-
8
-
-
0029312926
-
Branch-point attack in group II introns is a highly reversible transesterification, providing a potential proofreading mechanism for 5′-splice site selection
-
Chin, K., and A. M. Pyle. 1995. Branch-point attack in group II introns is a highly reversible transesterification, providing a potential proofreading mechanism for 5′-splice site selection. RNA 1:391-406.
-
(1995)
RNA
, vol.1
, pp. 391-406
-
-
Chin, K.1
Pyle, A.M.2
-
9
-
-
0028921811
-
Frequent use of the same tertiary motif by self-folding RNAs
-
Costa, M., and F. Michel. 1995. Frequent use of the same tertiary motif by self-folding RNAs. EMBO J. 14:1276-1285.
-
(1995)
EMBO J.
, vol.14
, pp. 1276-1285
-
-
Costa, M.1
Michel, F.2
-
10
-
-
0027263683
-
Domain 5 interacts with domain 6 and influences the second transesterification reaction of group II intron self-splicing
-
Dib-Hajj, S. D., S. C. Boulanger, S. K. Hebbar, C. L. Peebles, J. F. Franzen, and P. S. Perlman. 1993. Domain 5 interacts with domain 6 and influences the second transesterification reaction of group II intron self-splicing. Nucleic Acids Res. 21:1797-1804.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 1797-1804
-
-
Dib-Hajj, S.D.1
Boulanger, S.C.2
Hebbar, S.K.3
Peebles, C.L.4
Franzen, J.F.5
Perlman, P.S.6
-
11
-
-
0013799396
-
A neighbor-interaction analysis of the hypochromism and spectra of DNA
-
Felsenfeld, G., and S. Z. Hirschman. 1965. A neighbor-interaction analysis of the hypochromism and spectra of DNA. J. Mol. Biol. 13:407-427.
-
(1965)
J. Mol. Biol.
, vol.13
, pp. 407-427
-
-
Felsenfeld, G.1
Hirschman, S.Z.2
-
12
-
-
0027285186
-
Kinetic analysis of the 5′ splice junction hydrolysis of a group II intron promoted by domain 5
-
Franzen, J. F., M. Zhang, and C. L. Peebles. 1993. Kinetic analysis of the 5′ splice junction hydrolysis of a group II intron promoted by domain 5. Nucleic Acids Res. 21:627-634.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 627-634
-
-
Franzen, J.F.1
Zhang, M.2
Peebles, C.L.3
-
13
-
-
0028128946
-
Thermal activation of a group II intron ribozyme reveals multiple conformational states
-
Franzen, J. S, M. Zhang, T. R. Chay, and C. L. Peebles. 1994. Thermal activation of a group II intron ribozyme reveals multiple conformational states. Biochemistry 33:11315-11326.
-
(1994)
Biochemistry
, vol.33
, pp. 11315-11326
-
-
Franzen, J.S.1
Zhang, M.2
Chay, T.R.3
Peebles, C.L.4
-
14
-
-
0024995219
-
Self-splicing group-II and nuclear pre-messenger RNA introns - How similar are they?
-
Jacquier, A. 1990. Self-splicing group-II and nuclear pre-messenger RNA introns - how similar are they? Trends Biochem. Sci. 15:351-354.
-
(1990)
Trends Biochem. Sci.
, vol.15
, pp. 351-354
-
-
Jacquier, A.1
-
15
-
-
0025755708
-
Splice site selection and role of the lariat in a group II intron
-
Jacquier, A., and N. Jacquesson-Breuleux. 1991. Splice site selection and role of the lariat in a group II intron. J. Mol. Biol. 219:415-428.
-
(1991)
J. Mol. Biol.
, vol.219
, pp. 415-428
-
-
Jacquier, A.1
Jacquesson-Breuleux, N.2
-
16
-
-
0023643081
-
Multiple exon-binding sites in class II self-splicing introns
-
Jacquier, A., and F. Michel. 1987. Multiple exon-binding sites in class II self-splicing introns. Cell 50:17-29.
-
(1987)
Cell
, vol.50
, pp. 17-29
-
-
Jacquier, A.1
Michel, F.2
-
17
-
-
0025344901
-
Base-pairing interactions involving the 5′ and 3′ terminal nucleotides of group II self-splicing introns
-
Jacquier, A., and F. Michel. 1990. Base-pairing interactions involving the 5′ and 3′ terminal nucleotides of group II self-splicing introns. J. Mol. Biol. 213:437-447.
-
(1990)
J. Mol. Biol.
, vol.213
, pp. 437-447
-
-
Jacquier, A.1
Michel, F.2
-
18
-
-
0024022167
-
Group II intron domain 5 facilitates a trans-splicing reaction
-
Jarrell, K. A., R. C. Dietrich, and P. S. Perlman. 1988. Group II intron domain 5 facilitates a trans-splicing reaction. Mol. Cell. Biol. 8:2361-2366.
-
(1988)
Mol. Cell. Biol.
, vol.8
, pp. 2361-2366
-
-
Jarrell, K.A.1
Dietrich, R.C.2
Perlman, P.S.3
-
19
-
-
0023850025
-
Group II intron self-splicing: Alternative reaction conditions yield novel products
-
Jarrell, K. A., C. L. Peebles, R. C. Dietrich, S. L. Romiti, and P. S. Perlman. 1988. Group II intron self-splicing: alternative reaction conditions yield novel products. J. Biol. Chem. 263:3432-3439.
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 3432-3439
-
-
Jarrell, K.A.1
Peebles, C.L.2
Dietrich, R.C.3
Romiti, S.L.4
Perlman, P.S.5
-
20
-
-
0016146021
-
Three-dimensional tertiary structure of yeast phenylalanine transfer RNA
-
Kim, S.-H., F. L. Suddath, G. J. Quigley, A. McPherson, J. L. Sussman, A. Wang, N. Seeman, and A. Rich. 1974. Three-dimensional tertiary structure of yeast phenylalanine transfer RNA. Science 185:435-440.
-
(1974)
Science
, vol.185
, pp. 435-440
-
-
Kim, S.-H.1
Suddath, F.L.2
Quigley, G.J.3
McPherson, A.4
Sussman, J.L.5
Wang, A.6
Seeman, N.7
Rich, A.8
-
21
-
-
0026695012
-
Group II introns deleted for multiple substructures retain self-splicing activity
-
Koch, J. L., S. C. Boulanger, S. D. Dib-Hajj, S. K. Hebbar, and P. S. Perlman. 1992. Group II introns deleted for multiple substructures retain self-splicing activity. Mol. Cell. Biol. 12:1950-1958.
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 1950-1958
-
-
Koch, J.L.1
Boulanger, S.C.2
Dib-Hajj, S.D.3
Hebbar, S.K.4
Perlman, P.S.5
-
22
-
-
0026486883
-
A novel base-pairing interaction between U2 and U6 snRNAs suggest a mechanism for the catalytic activation of the spliceosome
-
Madhani, H. D., and C. Guthrie. 1992. A novel base-pairing interaction between U2 and U6 snRNAs suggest a mechanism for the catalytic activation of the spliceosome. Cell 71:803-817.
-
(1992)
Cell
, vol.71
, pp. 803-817
-
-
Madhani, H.D.1
Guthrie, C.2
-
23
-
-
0029066770
-
Structure and activities of group II introns
-
Michel, F., and J. L. Ferat. 1995. Structure and activities of group II introns. Annu. Rev. Biochem. 64:435-461.
-
(1995)
Annu. Rev. Biochem.
, vol.64
, pp. 435-461
-
-
Michel, F.1
Ferat, J.L.2
-
24
-
-
0024428420
-
Comparative and functional anatomy of group II catalytic introns - A review
-
Michel, F., K. Umesono, and H. Ozeki. 1989. Comparative and functional anatomy of group II catalytic introns - a review. Gene 82:5-30.
-
(1989)
Gene
, vol.82
, pp. 5-30
-
-
Michel, F.1
Umesono, K.2
Ozeki, H.3
-
25
-
-
0024819449
-
Synthesis of small RNAs using T7 RNA polymerase
-
Milligan, J. F., and O. C. Uhlenbeck. 1989. Synthesis of small RNAs using T7 RNA polymerase. Methods Enzymol. 180:51-62.
-
(1989)
Methods Enzymol.
, vol.180
, pp. 51-62
-
-
Milligan, J.F.1
Uhlenbeck, O.C.2
-
26
-
-
0027985820
-
Coaxially stacked RNA helices in the catalytic center of the Tetrahymena ribozyme
-
Murphy, F. L., Y.-H. Wang, J. D. Griffith, and T. R. Cech. 1994. Coaxially stacked RNA helices in the catalytic center of the Tetrahymena ribozyme. Science 265:1709-1712.
-
(1994)
Science
, vol.265
, pp. 1709-1712
-
-
Murphy, F.L.1
Wang, Y.-H.2
Griffith, J.D.3
Cech, T.R.4
-
27
-
-
0028769660
-
The stereochemical course of group II intron self-splicing
-
Padgett, R. A., M. Podar, S. C. Boulanger, and P. S. Perlman. 1994. The stereochemical course of group II intron self-splicing. Science 266:1685-1688.
-
(1994)
Science
, vol.266
, pp. 1685-1688
-
-
Padgett, R.A.1
Podar, M.2
Boulanger, S.C.3
Perlman, P.S.4
-
28
-
-
0027156992
-
Mutation of the conserved first nucleotide of a group II intron from yeast mitochondrial DNA reduces the rate but allows accurate splicing
-
Peebles, C. L., S. M. Belcher, M. Zhang, R. C. Dietrich, and P. S. Perlman. 1993. Mutation of the conserved first nucleotide of a group II intron from yeast mitochondrial DNA reduces the rate but allows accurate splicing. J. Biol. Chem. 268:11929-11938.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 11929-11938
-
-
Peebles, C.L.1
Belcher, S.M.2
Zhang, M.3
Dietrich, R.C.4
Perlman, P.S.5
-
29
-
-
0023488773
-
Group II intron self-splicing: Development of alternative reaction conditions and identification of a predicted intermediate
-
Peebles, C. L., E. A. Benatan, K. A. Jarrell, and P. S. Perlman. 1987. Group II intron self-splicing: development of alternative reaction conditions and identification of a predicted intermediate. Cold Spring Harbor Symp. Quant. Biol. 52:223-232.
-
(1987)
Cold Spring Harbor Symp. Quant. Biol.
, vol.52
, pp. 223-232
-
-
Peebles, C.L.1
Benatan, E.A.2
Jarrell, K.A.3
Perlman, P.S.4
-
30
-
-
0022551978
-
A self-splicing RNA excises an intron lariat
-
Peebles, C. L., P. S. Perlman, K. L. Mecklenburg, M. L. Petrillo, J. H. Tabor, K. A. Jarrell, and H.-L. Chen. 1986. A self-splicing RNA excises an intron lariat. Cell 44:213-223.
-
(1986)
Cell
, vol.44
, pp. 213-223
-
-
Peebles, C.L.1
Perlman, P.S.2
Mecklenburg, K.L.3
Petrillo, M.L.4
Tabor, J.H.5
Jarrell, K.A.6
Chen, H.-L.7
-
31
-
-
0028990228
-
Catalytically critical nucleotides in domain 5 of a group II intron
-
Peebles, C. L., M. Zhang, P. S. Perlman, and J. F. Franzen. 1995. Catalytically critical nucleotides in domain 5 of a group II intron. Proc. Natl. Acad. Sci. USA 92:4422-4426.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 4422-4426
-
-
Peebles, C.L.1
Zhang, M.2
Perlman, P.S.3
Franzen, J.F.4
-
32
-
-
0025362611
-
Genetic analysis of RNA splicing in yeast mitochondria
-
Perlman, P. S. 1990. Genetic analysis of RNA splicing in yeast mitochondria. Methods Enzymol. 181:539-558.
-
(1990)
Methods Enzymol.
, vol.181
, pp. 539-558
-
-
Perlman, P.S.1
-
33
-
-
0028063567
-
Three-dimensional structure of a hammerhead ribozyme
-
Pley, H. W., K. M. Flaherty, and D. B. McKay. 1994. Three-dimensional structure of a hammerhead ribozyme. Nature (London) 372:68-74.
-
(1994)
Nature (London)
, vol.372
, pp. 68-74
-
-
Pley, H.W.1
Flaherty, K.M.2
McKay, D.B.3
-
34
-
-
0029061712
-
Stereochemical selectivity of group II intron splicing, reverse splicing, and hydrolysis reactions
-
Podar, M., P. S. Perlman, and R. A. Padgett. 1995. Stereochemical selectivity of group II intron splicing, reverse splicing, and hydrolysis reactions. Mol. Cell. Biol. 15:4466-4478.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 4466-4478
-
-
Podar, M.1
Perlman, P.S.2
Padgett, R.A.3
-
35
-
-
0023090833
-
PET111, a Saccharomyces cerevisiae nuclear gene required for the translation of the mitochondrial mRNA encoding cytochrome c oxidase subunit II
-
Poutre, C, and T. D. Fox. 1987. PET111, a Saccharomyces cerevisiae nuclear gene required for the translation of the mitochondrial mRNA encoding cytochrome c oxidase subunit II. Genetics 115:637-647.
-
(1987)
Genetics
, vol.115
, pp. 637-647
-
-
Poutre, C.1
Fox, T.D.2
-
36
-
-
0028351893
-
Building a kinetic framework for group II intron ribozyme activity: Quantitation of interdomain binding and reaction rale
-
Pyle, A. M., and J. B. Green. 1994. Building a kinetic framework for group II intron ribozyme activity: quantitation of interdomain binding and reaction rale. Biochemistry 33:2716-2725.
-
(1994)
Biochemistry
, vol.33
, pp. 2716-2725
-
-
Pyle, A.M.1
Green, J.B.2
-
37
-
-
0025362399
-
A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae
-
Schmitt, M. E., T. A. Brown, and B. L. Trumpower. 1990. A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae. Nucleic Acids Res. 18:3091-3092.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 3091-3092
-
-
Schmitt, M.E.1
Brown, T.A.2
Trumpower, B.L.3
-
38
-
-
0022550426
-
Excised group II introns in yeast mitochondria are lariats and can be formed by self-splicing in vitro
-
van der Veen, R., A. C. Arnberg, G. van der Horst, L. Bonen, H. F. Tabak, and L. A. Grivell. 1986. Excised group II introns in yeast mitochondria are lariats and can be formed by self-splicing in vitro. Cell 44:225-234.
-
(1986)
Cell
, vol.44
, pp. 225-234
-
-
Van Der Veen, R.1
Arnberg, A.C.2
Van Der Horst, G.3
Bonen, L.4
Tabak, H.F.5
Grivell, L.A.6
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