메뉴 건너뛰기




Volumn 16, Issue 10, 1996, Pages 5896-5904

Length changes in the joining segment between domains 5 and 6 of a group II intron inhibit self-splicing and alter 3' splice site selection

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA; NUCLEOTIDE; RIBOZYME;

EID: 0029818398     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.16.10.5896     Document Type: Article
Times cited : (23)

References (38)
  • 1
    • 0029670279 scopus 로고    scopus 로고
    • Catalytic role of 2′-hydroxyl groups within a group II intron active site
    • Abramovitz, D. L., R. A. Friedman, and A. M. Pyle. 1996. Catalytic role of 2′-hydroxyl groups within a group II intron active site. Science 271:1410-1413.
    • (1996) Science , vol.271 , pp. 1410-1413
    • Abramovitz, D.L.1    Friedman, R.A.2    Pyle, A.M.3
  • 4
    • 0029055177 scopus 로고
    • Studies of point mutants define essential nucleotides in the domain 5 substructure of a group II intron
    • Boulanger, S. C., S. M. Belcher, U. Schmidt, S. D. Dib-Hajj, T. Schmidt, and P. S. Perlman. 1995. Studies of point mutants define essential nucleotides in the domain 5 substructure of a group II intron. Mol. Cell. Biol. 15:4479-4488.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 4479-4488
    • Boulanger, S.C.1    Belcher, S.M.2    Schmidt, U.3    Dib-Hajj, S.D.4    Schmidt, T.5    Perlman, P.S.6
  • 6
    • 0027451435 scopus 로고
    • Interaction of intronic boundaries is required for the second splicing step efficiency of a group II intron
    • Chanfreau, G., and A. Jacquier. 1993. Interaction of intronic boundaries is required for the second splicing step efficiency of a group II intron. EMBO J. 12:5173-5180.
    • (1993) EMBO J. , vol.12 , pp. 5173-5180
    • Chanfreau, G.1    Jacquier, A.2
  • 7
    • 0028569768 scopus 로고
    • Catalytic site components common to both splicing steps of a group II intron
    • Chanfreau, G., and A. Jacquier. 1994. Catalytic site components common to both splicing steps of a group II intron. Science 266:1383-1387.
    • (1994) Science , vol.266 , pp. 1383-1387
    • Chanfreau, G.1    Jacquier, A.2
  • 8
    • 0029312926 scopus 로고
    • Branch-point attack in group II introns is a highly reversible transesterification, providing a potential proofreading mechanism for 5′-splice site selection
    • Chin, K., and A. M. Pyle. 1995. Branch-point attack in group II introns is a highly reversible transesterification, providing a potential proofreading mechanism for 5′-splice site selection. RNA 1:391-406.
    • (1995) RNA , vol.1 , pp. 391-406
    • Chin, K.1    Pyle, A.M.2
  • 9
    • 0028921811 scopus 로고
    • Frequent use of the same tertiary motif by self-folding RNAs
    • Costa, M., and F. Michel. 1995. Frequent use of the same tertiary motif by self-folding RNAs. EMBO J. 14:1276-1285.
    • (1995) EMBO J. , vol.14 , pp. 1276-1285
    • Costa, M.1    Michel, F.2
  • 10
    • 0027263683 scopus 로고
    • Domain 5 interacts with domain 6 and influences the second transesterification reaction of group II intron self-splicing
    • Dib-Hajj, S. D., S. C. Boulanger, S. K. Hebbar, C. L. Peebles, J. F. Franzen, and P. S. Perlman. 1993. Domain 5 interacts with domain 6 and influences the second transesterification reaction of group II intron self-splicing. Nucleic Acids Res. 21:1797-1804.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 1797-1804
    • Dib-Hajj, S.D.1    Boulanger, S.C.2    Hebbar, S.K.3    Peebles, C.L.4    Franzen, J.F.5    Perlman, P.S.6
  • 11
    • 0013799396 scopus 로고
    • A neighbor-interaction analysis of the hypochromism and spectra of DNA
    • Felsenfeld, G., and S. Z. Hirschman. 1965. A neighbor-interaction analysis of the hypochromism and spectra of DNA. J. Mol. Biol. 13:407-427.
    • (1965) J. Mol. Biol. , vol.13 , pp. 407-427
    • Felsenfeld, G.1    Hirschman, S.Z.2
  • 12
    • 0027285186 scopus 로고
    • Kinetic analysis of the 5′ splice junction hydrolysis of a group II intron promoted by domain 5
    • Franzen, J. F., M. Zhang, and C. L. Peebles. 1993. Kinetic analysis of the 5′ splice junction hydrolysis of a group II intron promoted by domain 5. Nucleic Acids Res. 21:627-634.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 627-634
    • Franzen, J.F.1    Zhang, M.2    Peebles, C.L.3
  • 13
    • 0028128946 scopus 로고
    • Thermal activation of a group II intron ribozyme reveals multiple conformational states
    • Franzen, J. S, M. Zhang, T. R. Chay, and C. L. Peebles. 1994. Thermal activation of a group II intron ribozyme reveals multiple conformational states. Biochemistry 33:11315-11326.
    • (1994) Biochemistry , vol.33 , pp. 11315-11326
    • Franzen, J.S.1    Zhang, M.2    Chay, T.R.3    Peebles, C.L.4
  • 14
    • 0024995219 scopus 로고
    • Self-splicing group-II and nuclear pre-messenger RNA introns - How similar are they?
    • Jacquier, A. 1990. Self-splicing group-II and nuclear pre-messenger RNA introns - how similar are they? Trends Biochem. Sci. 15:351-354.
    • (1990) Trends Biochem. Sci. , vol.15 , pp. 351-354
    • Jacquier, A.1
  • 15
    • 0025755708 scopus 로고
    • Splice site selection and role of the lariat in a group II intron
    • Jacquier, A., and N. Jacquesson-Breuleux. 1991. Splice site selection and role of the lariat in a group II intron. J. Mol. Biol. 219:415-428.
    • (1991) J. Mol. Biol. , vol.219 , pp. 415-428
    • Jacquier, A.1    Jacquesson-Breuleux, N.2
  • 16
    • 0023643081 scopus 로고
    • Multiple exon-binding sites in class II self-splicing introns
    • Jacquier, A., and F. Michel. 1987. Multiple exon-binding sites in class II self-splicing introns. Cell 50:17-29.
    • (1987) Cell , vol.50 , pp. 17-29
    • Jacquier, A.1    Michel, F.2
  • 17
    • 0025344901 scopus 로고
    • Base-pairing interactions involving the 5′ and 3′ terminal nucleotides of group II self-splicing introns
    • Jacquier, A., and F. Michel. 1990. Base-pairing interactions involving the 5′ and 3′ terminal nucleotides of group II self-splicing introns. J. Mol. Biol. 213:437-447.
    • (1990) J. Mol. Biol. , vol.213 , pp. 437-447
    • Jacquier, A.1    Michel, F.2
  • 18
    • 0024022167 scopus 로고
    • Group II intron domain 5 facilitates a trans-splicing reaction
    • Jarrell, K. A., R. C. Dietrich, and P. S. Perlman. 1988. Group II intron domain 5 facilitates a trans-splicing reaction. Mol. Cell. Biol. 8:2361-2366.
    • (1988) Mol. Cell. Biol. , vol.8 , pp. 2361-2366
    • Jarrell, K.A.1    Dietrich, R.C.2    Perlman, P.S.3
  • 19
    • 0023850025 scopus 로고
    • Group II intron self-splicing: Alternative reaction conditions yield novel products
    • Jarrell, K. A., C. L. Peebles, R. C. Dietrich, S. L. Romiti, and P. S. Perlman. 1988. Group II intron self-splicing: alternative reaction conditions yield novel products. J. Biol. Chem. 263:3432-3439.
    • (1988) J. Biol. Chem. , vol.263 , pp. 3432-3439
    • Jarrell, K.A.1    Peebles, C.L.2    Dietrich, R.C.3    Romiti, S.L.4    Perlman, P.S.5
  • 21
    • 0026695012 scopus 로고
    • Group II introns deleted for multiple substructures retain self-splicing activity
    • Koch, J. L., S. C. Boulanger, S. D. Dib-Hajj, S. K. Hebbar, and P. S. Perlman. 1992. Group II introns deleted for multiple substructures retain self-splicing activity. Mol. Cell. Biol. 12:1950-1958.
    • (1992) Mol. Cell. Biol. , vol.12 , pp. 1950-1958
    • Koch, J.L.1    Boulanger, S.C.2    Dib-Hajj, S.D.3    Hebbar, S.K.4    Perlman, P.S.5
  • 22
    • 0026486883 scopus 로고
    • A novel base-pairing interaction between U2 and U6 snRNAs suggest a mechanism for the catalytic activation of the spliceosome
    • Madhani, H. D., and C. Guthrie. 1992. A novel base-pairing interaction between U2 and U6 snRNAs suggest a mechanism for the catalytic activation of the spliceosome. Cell 71:803-817.
    • (1992) Cell , vol.71 , pp. 803-817
    • Madhani, H.D.1    Guthrie, C.2
  • 23
    • 0029066770 scopus 로고
    • Structure and activities of group II introns
    • Michel, F., and J. L. Ferat. 1995. Structure and activities of group II introns. Annu. Rev. Biochem. 64:435-461.
    • (1995) Annu. Rev. Biochem. , vol.64 , pp. 435-461
    • Michel, F.1    Ferat, J.L.2
  • 24
    • 0024428420 scopus 로고
    • Comparative and functional anatomy of group II catalytic introns - A review
    • Michel, F., K. Umesono, and H. Ozeki. 1989. Comparative and functional anatomy of group II catalytic introns - a review. Gene 82:5-30.
    • (1989) Gene , vol.82 , pp. 5-30
    • Michel, F.1    Umesono, K.2    Ozeki, H.3
  • 25
    • 0024819449 scopus 로고
    • Synthesis of small RNAs using T7 RNA polymerase
    • Milligan, J. F., and O. C. Uhlenbeck. 1989. Synthesis of small RNAs using T7 RNA polymerase. Methods Enzymol. 180:51-62.
    • (1989) Methods Enzymol. , vol.180 , pp. 51-62
    • Milligan, J.F.1    Uhlenbeck, O.C.2
  • 26
    • 0027985820 scopus 로고
    • Coaxially stacked RNA helices in the catalytic center of the Tetrahymena ribozyme
    • Murphy, F. L., Y.-H. Wang, J. D. Griffith, and T. R. Cech. 1994. Coaxially stacked RNA helices in the catalytic center of the Tetrahymena ribozyme. Science 265:1709-1712.
    • (1994) Science , vol.265 , pp. 1709-1712
    • Murphy, F.L.1    Wang, Y.-H.2    Griffith, J.D.3    Cech, T.R.4
  • 27
    • 0028769660 scopus 로고
    • The stereochemical course of group II intron self-splicing
    • Padgett, R. A., M. Podar, S. C. Boulanger, and P. S. Perlman. 1994. The stereochemical course of group II intron self-splicing. Science 266:1685-1688.
    • (1994) Science , vol.266 , pp. 1685-1688
    • Padgett, R.A.1    Podar, M.2    Boulanger, S.C.3    Perlman, P.S.4
  • 28
    • 0027156992 scopus 로고
    • Mutation of the conserved first nucleotide of a group II intron from yeast mitochondrial DNA reduces the rate but allows accurate splicing
    • Peebles, C. L., S. M. Belcher, M. Zhang, R. C. Dietrich, and P. S. Perlman. 1993. Mutation of the conserved first nucleotide of a group II intron from yeast mitochondrial DNA reduces the rate but allows accurate splicing. J. Biol. Chem. 268:11929-11938.
    • (1993) J. Biol. Chem. , vol.268 , pp. 11929-11938
    • Peebles, C.L.1    Belcher, S.M.2    Zhang, M.3    Dietrich, R.C.4    Perlman, P.S.5
  • 29
    • 0023488773 scopus 로고
    • Group II intron self-splicing: Development of alternative reaction conditions and identification of a predicted intermediate
    • Peebles, C. L., E. A. Benatan, K. A. Jarrell, and P. S. Perlman. 1987. Group II intron self-splicing: development of alternative reaction conditions and identification of a predicted intermediate. Cold Spring Harbor Symp. Quant. Biol. 52:223-232.
    • (1987) Cold Spring Harbor Symp. Quant. Biol. , vol.52 , pp. 223-232
    • Peebles, C.L.1    Benatan, E.A.2    Jarrell, K.A.3    Perlman, P.S.4
  • 32
    • 0025362611 scopus 로고
    • Genetic analysis of RNA splicing in yeast mitochondria
    • Perlman, P. S. 1990. Genetic analysis of RNA splicing in yeast mitochondria. Methods Enzymol. 181:539-558.
    • (1990) Methods Enzymol. , vol.181 , pp. 539-558
    • Perlman, P.S.1
  • 33
    • 0028063567 scopus 로고
    • Three-dimensional structure of a hammerhead ribozyme
    • Pley, H. W., K. M. Flaherty, and D. B. McKay. 1994. Three-dimensional structure of a hammerhead ribozyme. Nature (London) 372:68-74.
    • (1994) Nature (London) , vol.372 , pp. 68-74
    • Pley, H.W.1    Flaherty, K.M.2    McKay, D.B.3
  • 34
    • 0029061712 scopus 로고
    • Stereochemical selectivity of group II intron splicing, reverse splicing, and hydrolysis reactions
    • Podar, M., P. S. Perlman, and R. A. Padgett. 1995. Stereochemical selectivity of group II intron splicing, reverse splicing, and hydrolysis reactions. Mol. Cell. Biol. 15:4466-4478.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 4466-4478
    • Podar, M.1    Perlman, P.S.2    Padgett, R.A.3
  • 35
    • 0023090833 scopus 로고
    • PET111, a Saccharomyces cerevisiae nuclear gene required for the translation of the mitochondrial mRNA encoding cytochrome c oxidase subunit II
    • Poutre, C, and T. D. Fox. 1987. PET111, a Saccharomyces cerevisiae nuclear gene required for the translation of the mitochondrial mRNA encoding cytochrome c oxidase subunit II. Genetics 115:637-647.
    • (1987) Genetics , vol.115 , pp. 637-647
    • Poutre, C.1    Fox, T.D.2
  • 36
    • 0028351893 scopus 로고
    • Building a kinetic framework for group II intron ribozyme activity: Quantitation of interdomain binding and reaction rale
    • Pyle, A. M., and J. B. Green. 1994. Building a kinetic framework for group II intron ribozyme activity: quantitation of interdomain binding and reaction rale. Biochemistry 33:2716-2725.
    • (1994) Biochemistry , vol.33 , pp. 2716-2725
    • Pyle, A.M.1    Green, J.B.2
  • 37
    • 0025362399 scopus 로고
    • A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae
    • Schmitt, M. E., T. A. Brown, and B. L. Trumpower. 1990. A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae. Nucleic Acids Res. 18:3091-3092.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 3091-3092
    • Schmitt, M.E.1    Brown, T.A.2    Trumpower, B.L.3
  • 38
    • 0022550426 scopus 로고
    • Excised group II introns in yeast mitochondria are lariats and can be formed by self-splicing in vitro
    • van der Veen, R., A. C. Arnberg, G. van der Horst, L. Bonen, H. F. Tabak, and L. A. Grivell. 1986. Excised group II introns in yeast mitochondria are lariats and can be formed by self-splicing in vitro. Cell 44:225-234.
    • (1986) Cell , vol.44 , pp. 225-234
    • Van Der Veen, R.1    Arnberg, A.C.2    Van Der Horst, G.3    Bonen, L.4    Tabak, H.F.5    Grivell, L.A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.