-
1
-
-
17444387503
-
Comparative analysis of the Saccharomyces cerevisiae and Caenorhabditis elegans protein interaction networks
-
AGRAFIOTI, I., J. SWIRE, J. ABBOTT, D. HUNTLEY, S. BUTCHER et al., 2005 Comparative analysis of the Saccharomyces cerevisiae and Caenorhabditis elegans protein interaction networks. BMC Evol. Biol. 5: 23.
-
(2005)
BMC Evol. Biol.
, vol.5
, pp. 23
-
-
Agrafioti, I.1
Swire, J.2
Abbott, J.3
Huntley, D.4
Butcher, S.5
-
2
-
-
0028220048
-
Synonymous codon usage in Drosophila melanogaster: Natural selection and translational accuracy
-
AKASHI, H., 1994 Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy. Genetics 136: 927-935.
-
(1994)
Genetics
, vol.136
, pp. 927-935
-
-
Akashi, H.1
-
3
-
-
0035546157
-
Gene expression and molecular evolution
-
AKASHI, H., 2001 Gene expression and molecular evolution. Curr. Opin. Genet. Dev.t 11: 660-666.
-
(2001)
Curr. Opin. Genet. Dev.t
, vol.11
, pp. 660-666
-
-
Akashi, H.1
-
4
-
-
0027484278
-
An accuracy center in the ribosome conserved over 2 billion years
-
USA
-
ALKSNE, L. E., R. A. ANTHONY, S. W. LIEBMAN and J. R. WARNER, 1993 An accuracy center in the ribosome conserved over 2 billion years. Proc. Natl. Acad. Sci. USA 90: 9538-9541.
-
(1993)
Proc. Natl. Acad. Sci.
, vol.90
, pp. 9538-9541
-
-
Alksne, L.E.1
Anthony, R.A.2
Liebman, S.W.3
Warner, J.R.4
-
5
-
-
2942624159
-
Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in protein-protein interactions data sets
-
BLOOM, J. D., and C. ADAMI, 2003 Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in protein-protein interactions data sets. BMC Evol. Biol. 3: 21.
-
(2003)
BMC Evol. Biol.
, vol.3
, pp. 21
-
-
Bloom, J.D.1
Adami, C.2
-
6
-
-
14144251690
-
Thermodynamic prediction of protein neutrality
-
USA
-
BLOOM, J. D., J. J. SILBERG, C. O. WILKE, D. A. DRUMMOND, C. ADAMI et al., 2005 Thermodynamic prediction of protein neutrality. Proc. Natl. Acad. Sci. USA 102: 606-611.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 606-611
-
-
Bloom, J.D.1
Silberg, J.J.2
Wilke, C.O.3
Drummond, D.A.4
Adami, C.5
-
7
-
-
0037041420
-
Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseases
-
BUCCIANTINI, M., E. GIANNONI, F. CHITI, F. BARONI, L. FORMIGLI et al., 2002 Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseases. Nature 416: 507-511.
-
(2002)
Nature
, vol.416
, pp. 507-511
-
-
Bucciantini, M.1
Giannoni, E.2
Chiti, F.3
Baroni, F.4
Formigli, L.5
-
8
-
-
33644747335
-
Why are phenotypic mutation rates much higher than genotypic mutation rates?
-
BÜRGER, R., M. WILLENSDORFER and M. A. NOWAK, 2006 Why are phenotypic mutation rates much higher than genotypic mutation rates? Genetics 172: 197-206.
-
(2006)
Genetics
, vol.172
, pp. 197-206
-
-
Bürger, R.1
Willensdorfer, M.2
Nowak, M.A.3
-
9
-
-
26444621352
-
Why highly expressed proteins evolve slowly
-
USA
-
DRUMMOND, D. A., J. D. BLOOM, C. ADAMI, C. O. WILKE and F. H. ARNOLD, 2005 Why highly expressed proteins evolve slowly. Proc. Natl. Acad. Sci. USA 102: 14338-14343.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 14338-14343
-
-
Drummond, D.A.1
Bloom, J.D.2
Adami, C.3
Wilke, C.O.4
Arnold, F.H.5
-
10
-
-
30744441602
-
A single determinant dominates the rate of yeast protein evolution
-
DRUMMOND, D. A., A. RAVAL and C. O. WILKE, 2006 A single determinant dominates the rate of yeast protein evolution. Mol. Biol. Evol. 23: 327-337.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 327-337
-
-
Drummond, D.A.1
Raval, A.2
Wilke, C.O.3
-
11
-
-
0037177560
-
Evolutionary rate in the protein interaction network
-
FRASER, H. B., A. E. HIRSH, L. M. STEINMETZ, C. SCHARFE and M. W. FELDMAN, 2002 Evolutionary rate in the protein interaction network. Science 296: 750-752.
-
(2002)
Science
, vol.296
, pp. 750-752
-
-
Fraser, H.B.1
Hirsh, A.E.2
Steinmetz, L.M.3
Scharfe, C.4
Feldman, M.W.5
-
12
-
-
0032573217
-
Directed evolution of a thermostable esterase
-
USA
-
GIVER, L., A. GERSHENSON, P.-O. FRESKGARD and F. H. ARNOLD, 1998 Directed evolution of a thermostable esterase. Proc. Natl. Acad. Sci. USA 95: 12809-12813.
-
(1998)
Proc. Natl. Acad. Sci.
, vol.95
, pp. 12809-12813
-
-
Giver, L.1
Gershenson, A.2
Freskgard, P.-O.3
Arnold, F.H.4
-
13
-
-
0141920354
-
Comparing protein abundance and mRNA expression levels on a genomic scale
-
GREENBAUM, D., C. COLANGELO, K. WILLIAMS and M. GERSTEIN, 2003 Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol. 4: 117.
-
(2003)
Genome Biol.
, vol.4
, pp. 117
-
-
Greenbaum, D.1
Colangelo, C.2
Williams, K.3
Gerstein, M.4
-
14
-
-
16344381521
-
Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks
-
HAHN, M. W., and A. D. KERN, 2005 Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks. Mol. Biol. Evol. 22: 803-806.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 803-806
-
-
Hahn, M.W.1
Kern, A.D.2
-
15
-
-
0842290925
-
Molecular evolution in large genetic networks: Does connectivity equal constraint?
-
HAHN, M. W., G. C. CONANT and A. WAGNER, 2004 Molecular evolution in large genetic networks: Does connectivity equal constraint? J. Mol. Evol. 58: 203-211.
-
(2004)
J. Mol. Evol.
, vol.58
, pp. 203-211
-
-
Hahn, M.W.1
Conant, G.C.2
Wagner, A.3
-
16
-
-
0024456475
-
The role of mRNA and protein stability in gene expression
-
HARGROVE, J. L., and F. H. SCHMIDT, 1989 The role of mRNA and protein stability in gene expression. FASEB J. 3: 2360-2370.
-
(1989)
FASEB J.
, vol.3
, pp. 2360-2370
-
-
Hargrove, J.L.1
Schmidt, F.H.2
-
17
-
-
0035963414
-
Protein dispensability and rate of evolution
-
HIRSH, A. E., and H. B. FRASER, 2001 Protein dispensability and rate of evolution. Nature 411: 1046-1049.
-
(2001)
Nature
, vol.411
, pp. 1046-1049
-
-
Hirsh, A.E.1
Fraser, H.B.2
-
18
-
-
0033565762
-
Do essential genes evolve slowly?
-
HURST, L. D., and N. G. C. SMITH, 1999 Do essential genes evolve slowly? Curr. Biol. 9: 747-750.
-
(1999)
Curr. Biol.
, vol.9
, pp. 747-750
-
-
Hurst, L.D.1
Smith, N.G.C.2
-
19
-
-
0036078078
-
Essential genes are more evolutionarily conserved than are nonessential genes in bacteria
-
JORDAN, I. K., I. B. ROGOZIN, Y. I. WOLF and E. V. KOONIN, 2002 Essential genes are more evolutionarily conserved than are nonessential genes in bacteria. Genome Res. 12: 962-968.
-
(2002)
Genome Res.
, vol.12
, pp. 962-968
-
-
Jordan, I.K.1
Rogozin, I.B.2
Wolf, Y.I.3
Koonin, E.V.4
-
20
-
-
0842291785
-
No simple dependence between protein evolution rate and the number of protein-protein interactions: Only the most prolific interactors tend to evolve slowly
-
JORDAN, I. K., Y. I. WOLF and E. V. KOONIN, 2003 No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly. BMC Evol. Biol. 3: 1.
-
(2003)
BMC Evol. Biol.
, vol.3
, pp. 1
-
-
Jordan, I.K.1
Wolf, Y.I.2
Koonin, E.V.3
-
21
-
-
0030946680
-
The structure and function of RuBisCO and their implications for systematic studies
-
KELLOGG, E., and N. JULIANO, 1997 The structure and function of RuBisCO and their implications for systematic studies. Am. J. Bot. 84: 413-428.
-
(1997)
Am. J. Bot.
, vol.84
, pp. 413-428
-
-
Kellogg, E.1
Juliano, N.2
-
23
-
-
0027104840
-
Translational accuracy and the fitness of bacteria
-
KURLAND, C. G., 1992 Translational accuracy and the fitness of bacteria. Annu. Rev. Genet. 26: 29-50.
-
(1992)
Annu. Rev. Genet.
, vol.26
, pp. 29-50
-
-
Kurland, C.G.1
-
24
-
-
0035012056
-
Synonymous codon usage, accuracy of translation, and gene length in Caenorhabditis elegans
-
MARAIS, G., and L. DURET, 2001 Synonymous codon usage, accuracy of translation, and gene length in Caenorhabditis elegans. J. Mol. Evol. 52: 275-280.
-
(2001)
J. Mol. Evol.
, vol.52
, pp. 275-280
-
-
Marais, G.1
Duret, L.2
-
25
-
-
0027020232
-
The nearly neutral theory of molecular evolution
-
OHTA, T., 1992 The nearly neutral theory of molecular evolution. Annu. Rev. Ecol. Syst. 23: 263-286.
-
(1992)
Annu. Rev. Ecol. Syst.
, vol.23
, pp. 263-286
-
-
Ohta, T.1
-
26
-
-
0034978556
-
Highly expressed genes in yeast evolve slowly
-
PAL, C., B. PAPP and L. D. HURST, 2001 Highly expressed genes in yeast evolve slowly. Genetics 158: 927-931.
-
(2001)
Genetics
, vol.158
, pp. 927-931
-
-
Pal, C.1
Papp, B.2
Hurst, L.D.3
-
27
-
-
0037472928
-
Rate of evolution and gene dispensability
-
PAL, C., B. PAPP and L. D. HURST, 2003 Rate of evolution and gene dispensability. Nature 421: 496-497.
-
(2003)
Nature
, vol.421
, pp. 496-497
-
-
Pal, C.1
Papp, B.2
Hurst, L.D.3
-
28
-
-
0023655732
-
Missense misreading of asparagine codons as a function of codon identity and context
-
PRECUP, J., and J. PARKER, 1987 Missense misreading of asparagine codons as a function of codon identity and context. J. Biol. Chem. 262: 11351-11355.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 11351-11355
-
-
Precup, J.1
Parker, J.2
-
29
-
-
0037342270
-
Quantitating protein synthesis, degradation, and endogenous antigen processing
-
PRINCIOTTA, M. F., D. FINZI, S. B. QIAN, J. GIBBS, S. SCHUCHMANN et al., 2003 Quantitating protein synthesis, degradation, and endogenous antigen processing. Immunity 18: 343-354.
-
(2003)
Immunity
, vol.18
, pp. 343-354
-
-
Princiotta, M.F.1
Finzi, D.2
Qian, S.B.3
Gibbs, J.4
Schuchmann, S.5
-
30
-
-
1242284655
-
An analysis of determinants of amino acids substitution rates in bacterial proteins
-
ROCHA, E. P. C., and A. DANCHIN, 2004 An analysis of determinants of amino acids substitution rates in bacterial proteins. Mol. Biol. Evol. 21: 108-116.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 108-116
-
-
Rocha, E.P.C.1
Danchin, A.2
-
31
-
-
22144437325
-
The application of statistical physics to evolutionary biology
-
USA
-
SELLA, G., and A. E. HIRSH, 2005 The application of statistical physics to evolutionary biology. Proc. Natl. Acad. Sci. USA 102: 9541-9546.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 9541-9546
-
-
Sella, G.1
Hirsh, A.E.2
-
33
-
-
17244367886
-
Functional genomic analysis of the rates of protein evolution
-
USA
-
WALL, D. P., A. E. HIRSH, H. B. FRASER, J. KUMM, G. GIAEVER et al., 2005 Functional genomic analysis of the rates of protein evolution. Proc. Natl. Acad. Sci. USA 102: 5483-5488.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 5483-5488
-
-
Wall, D.P.1
Hirsh, A.E.2
Fraser, H.B.3
Kumm, J.4
Giaever, G.5
-
34
-
-
25444496759
-
Molecular clock in neutral protein evolution
-
WILKE, C. O., 2004 Molecular clock in neutral protein evolution. BMC Genet. 5: 25.
-
(2004)
BMC Genet.
, vol.5
, pp. 25
-
-
Wilke, C.O.1
-
35
-
-
28444461529
-
Predicting the tolerance of proteins to random amino acid substitution
-
WILKE, C. O., J. D. BLOOM, D. A. DRUMMOND and A. RAVAL, 2005 Predicting the tolerance of proteins to random amino acid substitution. Biophys. J. 89: 3714-3720.
-
(2005)
Biophys. J.
, vol.89
, pp. 3714-3720
-
-
Wilke, C.O.1
Bloom, J.D.2
Drummond, D.A.3
Raval, A.4
-
36
-
-
16344369543
-
Significant impact of protein dispensability on the instantaneous rate of protein evolution
-
ZHANG, J., and X. HE, 2005 Significant impact of protein dispensability on the instantaneous rate of protein evolution. Mol. Biol. Evol. 22: 1147-1155.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1147-1155
-
-
Zhang, J.1
He, X.2
|