-
1
-
-
0023754154
-
In vivo and in vitro structural analysis of the rplJ mRNA leader of Escherichia coli. Protection by bound L10-L7/L12
-
Climie,S.C. and Friesen,J.D. (1988) In vivo and in vitro structural analysis of the rplJ mRNA leader of Escherichia coli. Protection by bound L10-L7/L12. J. Biol. Chem., 263, 15166-15175.
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 15166-15175
-
-
Climie, S.C.1
Friesen, J.D.2
-
2
-
-
0036232115
-
Lead(II) as a probe for investigating RNA structure in vivo
-
Lindell,M., Romby,P. and Wagner,E.G. (2002) Lead(II) as a probe for investigating RNA structure in vivo. RNA, 8, 534-541.
-
(2002)
RNA
, vol.8
, pp. 534-541
-
-
Lindell, M.1
Romby, P.2
Wagner, E.G.3
-
3
-
-
0024814177
-
Conformational alterations in the ermC transcript in vivo during induction
-
Mayford,M. and Weisblum,B. (1989) Conformational alterations in the ermC transcript in vivo during induction. EMBO J., 8, 4307-4314.
-
(1989)
EMBO J.
, vol.8
, pp. 4307-4314
-
-
Mayford, M.1
Weisblum, B.2
-
4
-
-
0029312758
-
Analysis of the structure of Tetrahymena nuclear RNAs in vivo: Telomerase RNA, the self-splicing rRNA intron, and U2 snRNA
-
Zaug,A.J. and Cech,T.R. (1995) Analysis of the structure of Tetrahymena nuclear RNAs in vivo: Telomerase RNA, the self-splicing rRNA intron, and U2 snRNA. RNA, 1, 363-374.
-
(1995)
RNA
, vol.1
, pp. 363-374
-
-
Zaug, A.J.1
Cech, T.R.2
-
5
-
-
0033648805
-
Use of dimethyl sulfate to probe RNA structure in vivo
-
Wells,S.E., Hughes,J.M., Igel,A.H. and Ares,M.,Jr (2000) Use of dimethyl sulfate to probe RNA structure in vivo. Methods Enzymol., 318, 479-493.
-
(2000)
Methods Enzymol.
, vol.318
, pp. 479-493
-
-
Wells, S.E.1
Hughes, J.M.2
Igel, A.H.3
Ares Jr., M.4
-
6
-
-
0032519508
-
A chemical modification method for the structural analysis of RNA and RNA-protein complexes within living cells
-
Balzer,M. and Wagner,R. (1998) A chemical modification method for the structural analysis of RNA and RNA-protein complexes within living cells. Anal. Biochem., 256, 240-242.
-
(1998)
Anal. Biochem.
, vol.256
, pp. 240-242
-
-
Balzer, M.1
Wagner, R.2
-
7
-
-
0036712305
-
RNA chaperone StpA loosens interactions of the tertiary structure in the td group I intron in vivo
-
Waldsich,C., Grossberger,R. and Schroeder,R. (2002) RNA chaperone StpA loosens interactions of the tertiary structure in the td group I intron in vivo. Genes Dev., 16, 2300-2312.
-
(2002)
Genes Dev.
, vol.16
, pp. 2300-2312
-
-
Waldsich, C.1
Grossberger, R.2
Schroeder, R.3
-
8
-
-
0024474697
-
KMnO4 as a probe for lac promoter DNA melting and mechanism in vivo
-
Sasse-Dwight,S. and Gralla,J.D. (1989) KMnO4 as a probe for lac promoter DNA melting and mechanism in vivo. J. Biol. Chem., 264, 8074-8081.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 8074-8081
-
-
Sasse-Dwight, S.1
Gralla, J.D.2
-
9
-
-
0035515226
-
A versatile in vivo footprinting technique using 1,10-phenanthroline-copper complex to study important cellular processes
-
Basak,S. and Nagaraja,V. (2001) A versatile in vivo footprinting technique using 1,10-phenanthroline-copper complex to study important cellular processes. Nucleic Acids Res., 29, E105-E105.
-
(2001)
Nucleic Acids Res.
, vol.29
-
-
Basak, S.1
Nagaraja, V.2
-
10
-
-
16244389281
-
Mapping nucleic acid structure by hydroxyl radical cleavage
-
Tullius,T.D. and Greenbaum,J.A. (2005) Mapping nucleic acid structure by hydroxyl radical cleavage. Curr. Opin. Chem. Biol., 9, 127-134.
-
(2005)
Curr. Opin. Chem. Biol.
, vol.9
, pp. 127-134
-
-
Tullius, T.D.1
Greenbaum, J.A.2
-
11
-
-
0032549780
-
RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting
-
Sclavi,B., Sullivan,M., Chance,M.R., Brenowitz,M. and Woodson,S.A. (1998) RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting. Science, 279, 1940-1943.
-
(1998)
Science
, vol.279
, pp. 1940-1943
-
-
Sclavi, B.1
Sullivan, M.2
Chance, M.R.3
Brenowitz, M.4
Woodson, S.A.5
-
12
-
-
0002193871
-
Primary products in radiation chemistry
-
Farhatazis,I. and Rodgers,M.A. (eds), VCH Publications, TX
-
Klassen,N.V. (1987) Primary products in radiation chemistry. In Farhatazis,I. and Rodgers,M.A. (eds), Radiation Chemistry: Principles and Applications. VCH Publications, TX, pp. 29-61.
-
(1987)
Radiation Chemistry: Principles and Applications
, pp. 29-61
-
-
Klassen, N.V.1
-
13
-
-
0022461871
-
Characterization of free radical-induced base damage in DNA at biologically relevant levels
-
Dizdaroglu,M. and Bergtold,D.S. (1986) Characterization of free radical-induced base damage in DNA at biologically relevant levels. Anal. Biochem., 156, 182-188.
-
(1986)
Anal. Biochem.
, vol.156
, pp. 182-188
-
-
Dizdaroglu, M.1
Bergtold, D.S.2
-
14
-
-
0026295112
-
The chemistry of free-radical-mediated DNA damage
-
Discussion 317-221
-
von Sonntag,C. (1991) The chemistry of free-radical-mediated DNA damage. Basic Life Sci., 58, 287-317; Discussion 317-221.
-
(1991)
Basic Life Sci.
, vol.58
, pp. 287-317
-
-
von Sonntag, C.1
-
15
-
-
0032544035
-
DNA strand breaking by the hydroxyl radical is governed by the accessible surface areas of the hydrogen atoms of the DNA backbone
-
Balasubramanian,B., Pogozelski,W.K. and Tullius,T.D. (1998) DNA strand breaking by the hydroxyl radical is governed by the accessible surface areas of the hydrogen atoms of the DNA backbone. Proc. Natl Acad. Sci. USA, 95, 9738-9743.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 9738-9743
-
-
Balasubramanian, B.1
Pogozelski, W.K.2
Tullius, T.D.3
-
16
-
-
0024359787
-
Defining the inside and outside of a catalytic RNA molecule
-
Latham,J.A. and Cech,T.R. (1989) Defining the inside and outside of a catalytic RNA molecule. Science, 245, 276-282.
-
(1989)
Science
, vol.245
, pp. 276-282
-
-
Latham, J.A.1
Cech, T.R.2
-
17
-
-
0029820625
-
Crystal structure of a group I ribozyme domain: Principles of RNA packing
-
Cate,J.H., Gooding,A.R., Podell,E., Zhou,K., Golden,B.L., Kundrot,C.E., Cech,T.R. and Doudna,J.A. (1996) Crystal structure of a group I ribozyme domain: Principles of RNA packing. Science, 273, 1678-1685.
-
(1996)
Science
, vol.273
, pp. 1678-1685
-
-
Cate, J.H.1
Gooding, A.R.2
Podell, E.3
Zhou, K.4
Golden, B.L.5
Kundrot, C.E.6
Cech, T.R.7
Doudna, J.A.8
-
18
-
-
9344232753
-
Crystal structure of a group I intron splicing intermediate
-
Adams,P.L., Stahley,M.R., Gill,M.L., Kosek,A.B., Wang,J. and Strobel,S.A. (2004) Crystal structure of a group I intron splicing intermediate. RNA, 10, 1867-1887.
-
(2004)
RNA
, vol.10
, pp. 1867-1887
-
-
Adams, P.L.1
Stahley, M.R.2
Gill, M.L.3
Kosek, A.B.4
Wang, J.5
Strobel, S.A.6
-
19
-
-
0034697671
-
High resolution in vivo footprinting of a protein-DNA complex using gamma radiation
-
Ottinger,L.M. and Tullius,T.D. (2000) High resolution in vivo footprinting of a protein-DNA complex using gamma radiation. J. Am. Chem. Soc., 122, 5901-5902.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 5901-5902
-
-
Ottinger, L.M.1
Tullius, T.D.2
-
20
-
-
4444235862
-
Kinetics analysis of DNA-protein interactions by time resolved synchrotron X-ray footprinting
-
Johnson,K.A. (ed.), IRL Press at Oxford University, Oxford
-
Dhavan,G.M., Chance,M.R. and Brenowitz,M. (2003) Kinetics analysis of DNA-protein interactions by time resolved synchrotron X-ray footprinting. In Johnson,K.A. (ed.), Kinetic Analysis of Macromolecules: A Practical Approach. IRL Press at Oxford University, Oxford, pp. 75-86.
-
(2003)
Kinetic Analysis of Macromolecules: A Practical Approach
, pp. 75-86
-
-
Dhavan, G.M.1
Chance, M.R.2
Brenowitz, M.3
-
21
-
-
0016369454
-
Total reconstitution of functionally active 50S ribosomal subunits from Escherichia coli
-
Nierhaus,K.H. and Dohme,F. (1974) Total reconstitution of functionally active 50S ribosomal subunits from Escherichia coli. Proc. Natl Acad. Sci. USA, 71, 4713-4717.
-
(1974)
Proc. Natl Acad. Sci. USA
, vol.71
, pp. 4713-4717
-
-
Nierhaus, K.H.1
Dohme, F.2
-
22
-
-
0033534197
-
Nucleotides in 16S rRNA protected by the association of 30S and 50S ribosomal subunits
-
Merryman,C., Moazed,D., McWhirter,J. and Noller,H.F. (1999) Nucleotides in 16S rRNA protected by the association of 30S and 50S ribosomal subunits. J. Mol. Biol., 285, 97-105.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 97-105
-
-
Merryman, C.1
Moazed, D.2
McWhirter, J.3
Noller, H.F.4
-
23
-
-
0022470564
-
Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension
-
Moazed,D., Stern,S. and Noller,H.F. (1986) Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension. J. Mol. Biol., 187, 399-416.
-
(1986)
J. Mol. Biol.
, vol.187
, pp. 399-416
-
-
Moazed, D.1
Stern, S.2
Noller, H.F.3
-
24
-
-
0003098935
-
Footprinting and modification-interference analysis of binding sites on RNA
-
Smith,C.W.J. (ed.), Oxford University Press, NY
-
Merryman,C. and Noller,H.F. (1998) Footprinting and modification-interference analysis of binding sites on RNA. In Smith,C.W.J. (ed.), RNA-Protein Interactions. Oxford University Press, NY, pp. 237-253.
-
(1998)
RNA-Protein Interactions
, pp. 237-253
-
-
Merryman, C.1
Noller, H.F.2
-
25
-
-
24044530426
-
Lead(II) cleavage analysis of RNase P RNA in vivo
-
Lindell,M., Brannvall,M., Wagner,E.G. and Kirsebom,L.A. (2005) Lead(II) cleavage analysis of RNase P RNA in vivo. RNA, 11, 1348-1354.
-
(2005)
RNA
, vol.11
, pp. 1348-1354
-
-
Lindell, M.1
Brannvall, M.2
Wagner, E.G.3
Kirsebom, L.A.4
-
26
-
-
27644491082
-
Structures of the bacterial ribosome at 3.5 A resolution
-
Schuwirth,B.S., Borovinskaya,M.A., Hau,C.W., Zhang,W., Vila-Sanjurjo,A., Holton,J.M. and Cate,J.H. (2005) Structures of the bacterial ribosome at 3.5 A resolution. Science, 310, 827-834.
-
(2005)
Science
, vol.310
, pp. 827-834
-
-
Schuwirth, B.S.1
Borovinskaya, M.A.2
Hau, C.W.3
Zhang, W.4
Vila-Sanjurjo, A.5
Holton, J.M.6
Cate, J.H.7
-
27
-
-
0001073978
-
A resolution-sensitive procedure for comparing protein surfaces and its application to the comparison of antigen-combining sites
-
Gerstein,M. (1992) A resolution-sensitive procedure for comparing protein surfaces and its application to the comparison of antigen-combining sites. Acta Cryst. A, 48, 271-276.
-
(1992)
Acta Cryst. A
, vol.48
, pp. 271-276
-
-
Gerstein, M.1
-
28
-
-
0021202164
-
Freezing of living cells: Mechanisms and implications
-
Mazur,P. (1984) Freezing of living cells: Mechanisms and implications. Am. J. Physiol., 247, C125-142.
-
(1984)
Am. J. Physiol.
, vol.247
-
-
Mazur, P.1
-
29
-
-
0029143136
-
Thiazolidine prodrugs of cysteamine and cysteine as radioprotective agents
-
Roberts,J.C., Koch,K.E., Detrick,S.R., Warters,R.L. and Lubec,G. (1995) Thiazolidine prodrugs of cysteamine and cysteine as radioprotective agents. Radiat. Res., 143, 203-213.
-
(1995)
Radiat. Res.
, vol.143
, pp. 203-213
-
-
Roberts, J.C.1
Koch, K.E.2
Detrick, S.R.3
Warters, R.L.4
Lubec, G.5
-
30
-
-
0026526993
-
Free radicals from irradiated lyophilized DNA: Influence of water of hydration
-
Huttermann,J., Rohrig,M. and Kohnlein,W. (1992) Free radicals from irradiated lyophilized DNA: Influence of water of hydration. Int. J. Radiat. Biol., 61, 299-313.
-
(1992)
Int. J. Radiat. Biol.
, vol.61
, pp. 299-313
-
-
Huttermann, J.1
Rohrig, M.2
Kohnlein, W.3
-
31
-
-
0030228822
-
Damage induced by hydroxyl radicals generated in the hydration layer of gamma-irradiated frozen aqueous solution of DNA
-
Ohshima,H., Iida,Y., Matsuda,A. and Kuwabara,M. (1996) Damage induced by hydroxyl radicals generated in the hydration layer of gamma-irradiated frozen aqueous solution of DNA. J. Radiat. Res. (Tokyo), 37, 199-207.
-
(1996)
J. Radiat. Res. (Tokyo)
, vol.37
, pp. 199-207
-
-
Ohshima, H.1
Iida, Y.2
Matsuda, A.3
Kuwabara, M.4
-
33
-
-
12144290543
-
Radiation-induced DNA damage: Formation, measurement, and biochemical features
-
Cadet,J., Bellon,S., Douki,T., Frelon,S., Gasparutto,D., Muller,E., Pouget,J.P., Ravanat,J.L., Romieu,A. and Sauvaigo,S. (2004) Radiation-induced DNA damage: Formation, measurement, and biochemical features. J. Environ. Pathol. Toxicol. Oncol., 23, 33-43.
-
(2004)
J. Environ. Pathol. Toxicol. Oncol.
, vol.23
, pp. 33-43
-
-
Cadet, J.1
Bellon, S.2
Douki, T.3
Frelon, S.4
Gasparutto, D.5
Muller, E.6
Pouget, J.P.7
Ravanat, J.L.8
Romieu, A.9
Sauvaigo, S.10
-
34
-
-
13844296708
-
Bumps in the road: How replicative DNA polymerases see DNA damage
-
Hogg,M., Wallace,S.S. and Doublie,S. (2005) Bumps in the road: How replicative DNA polymerases see DNA damage. Curr. Opin. Struct. Biol., 15, 86-93.
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 86-93
-
-
Hogg, M.1
Wallace, S.S.2
Doublie, S.3
-
35
-
-
0035805213
-
Crystal structure of the ribosome at 5.5 A resolution
-
Yusupov,M.M., Yusupova,G.Z., Baucom,A., Lieberman,K., Earnest,T.N., Cate,J.H. and Noller,H.F. (2001) Crystal structure of the ribosome at 5.5 A resolution. Science, 292, 883-896.
-
(2001)
Science
, vol.292
, pp. 883-896
-
-
Yusupov, M.M.1
Yusupova, G.Z.2
Baucom, A.3
Lieberman, K.4
Earnest, T.N.5
Cate, J.H.6
Noller, H.F.7
-
36
-
-
0036303417
-
Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: Structure of the proteins and their interactions with 16 S RNA
-
Brodersen,D.E., Clemons,W.M.,Jr, Carter,A.P., Wimberly,B.T. and Ramakrishnan,V. (2002) Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: Structure of the proteins and their interactions with 16 S RNA. J. Mol. Biol., 316, 725-768.
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 725-768
-
-
Brodersen, D.E.1
Clemons Jr., W.M.2
Carter, A.P.3
Wimberly, B.T.4
Ramakrishnan, V.5
-
37
-
-
0021100156
-
S1 nuclease mapping analysis of ribosomal RNA processing in wild type and processing deficient Escherichia coli
-
King,T.C. and Schlessinger,D. (1983) S1 nuclease mapping analysis of ribosomal RNA processing in wild type and processing deficient Escherichia coli. J. Biol. Chem., 258, 12034-12042.
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 12034-12042
-
-
King, T.C.1
Schlessinger, D.2
-
38
-
-
0030598998
-
Growth rate regulation of 4.5 S RNA and M1 RNA the catalytic subunit of Escherichia coli RNase P
-
Dong,H., Kirsebom,L.A. and Nilsson,L. (1996) Growth rate regulation of 4.5 S RNA and M1 RNA the catalytic subunit of Escherichia coli RNase P. J. Mol. Biol., 261, 303-308.
-
(1996)
J. Mol. Biol.
, vol.261
, pp. 303-308
-
-
Dong, H.1
Kirsebom, L.A.2
Nilsson, L.3
-
39
-
-
25644433566
-
Crystal structure of the RNA component of bacterial ribonuclease P
-
Torres-Larios,A., Swinger,K.K., Krasilnikov,A.S., Pan,T. and Mondragon,A. (2005) Crystal structure of the RNA component of bacterial ribonuclease P. Nature, 437, 584-587.
-
(2005)
Nature
, vol.437
, pp. 584-587
-
-
Torres-Larios, A.1
Swinger, K.K.2
Krasilnikov, A.S.3
Pan, T.4
Mondragon, A.5
-
40
-
-
0029866752
-
Mapping in three dimensions of regions in a catalytic RNA protected from attack by an Fe(II)-EDTA reagent
-
Westhof,E., Wesolowski,D. and Altman,S. (1996) Mapping in three dimensions of regions in a catalytic RNA protected from attack by an Fe(II)-EDTA reagent. J. Mol. Biol., 258, 600-613.
-
(1996)
J. Mol. Biol.
, vol.258
, pp. 600-613
-
-
Westhof, E.1
Wesolowski, D.2
Altman, S.3
-
41
-
-
0020050364
-
Radiolytic pathways in gamma-irradiated DNA: Influence of chemical and conformational factors
-
Gregoli,S., Olast,M. and Bertinchamps,A. (1982) Radiolytic pathways in gamma-irradiated DNA: Influence of chemical and conformational factors. Radiat. Res., 89, 238-254.
-
(1982)
Radiat. Res.
, vol.89
, pp. 238-254
-
-
Gregoli, S.1
Olast, M.2
Bertinchamps, A.3
-
42
-
-
0033568535
-
Millisecond radiolytic modification of peptides by synchrotron X-rays identified by mass spectrometry
-
Maleknia,S.D., Brenowitz,M. and Chance,M.R. (1999) Millisecond radiolytic modification of peptides by synchrotron X-rays identified by mass spectrometry. Anal. Chem., 71, 3965-3973.
-
(1999)
Anal. Chem.
, vol.71
, pp. 3965-3973
-
-
Maleknia, S.D.1
Brenowitz, M.2
Chance, M.R.3
-
43
-
-
0031079883
-
In vivo footprinting of the interaction of proteins with DNA and RNA
-
Grange,T., Bertrand,E., Espinas,M.L., Fromont-Racine,M., Rigaud,G., Roux,J. and Pictet,R. (1997) In vivo footprinting of the interaction of proteins with DNA and RNA. Methods, 11, 151-163.
-
(1997)
Methods
, vol.11
, pp. 151-163
-
-
Grange, T.1
Bertrand, E.2
Espinas, M.L.3
Fromont-Racine, M.4
Rigaud, G.5
Roux, J.6
Pictet, R.7
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