메뉴 건너뛰기




Volumn 185, Issue 3, 2003, Pages 1059-1070

Traffic at the tmRNA gene

Author keywords

[No Author keywords available]

Indexed keywords

GENE PRODUCT; INTEGRASE; MESSENGER RNA; TM RNA; TRANSFER RNA; UNCLASSIFIED DRUG;

EID: 0037310615     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.185.3.1059-1070.2003     Document Type: Article
Times cited : (44)

References (57)
  • 1
    • 0032741878 scopus 로고    scopus 로고
    • Unusual structure of the attB site of the site-specific recombination system of Lactobacillus delbrueckii bacteriophage mv4
    • Auvray, F., M. Coddeville, R. C. Ordonez, and P. Ritzenthaler. 1999. Unusual structure of the attB site of the site-specific recombination system of Lactobacillus delbrueckii bacteriophage mv4. J. Bacteriol. 181:7385-7389.
    • (1999) J. Bacteriol. , vol.181 , pp. 7385-7389
    • Auvray, F.1    Coddeville, M.2    Ordonez, R.C.3    Ritzenthaler, P.4
  • 3
    • 0031900395 scopus 로고    scopus 로고
    • Mosaic structure of the smpB-nrdE intergenic region of Salmonella enterica
    • Baumler, A. J., and F. Heffron. 1998. Mosaic structure of the smpB-nrdE intergenic region of Salmonella enterica. J. Bacteriol. 180:2220-2223.
    • (1998) J. Bacteriol. , vol.180 , pp. 2220-2223
    • Baumler, A.J.1    Heffron, F.2
  • 4
    • 0028215784 scopus 로고
    • Salmonella typhimurium loci involved in survival within macrophages
    • Baumler, A. J., J. G. Kusters, I. Stojiljkovic, and F. Heffron. 1994. Salmonella typhimurium loci involved in survival within macrophages. Infect. Immun. 62:1623-1630.
    • (1994) Infect. Immun. , vol.62 , pp. 1623-1630
    • Baumler, A.J.1    Kusters, J.G.2    Stojiljkovic, I.3    Heffron, F.4
  • 5
    • 0026029477 scopus 로고
    • Reference collection of strains of the Salmonella typhimurium complex from natural populations
    • Beltran, P., S. A. Plock, N. H. Smith, T. S. Whittam, D. C. Old, and R. K. Selander. 1991. Reference collection of strains of the Salmonella typhimurium complex from natural populations. J. Gen. Microbiol. 137:601-606.
    • (1991) J. Gen. Microbiol. , vol.137 , pp. 601-606
    • Beltran, P.1    Plock, S.A.2    Smith, N.H.3    Whittam, T.S.4    Old, D.C.5    Selander, R.K.6
  • 6
    • 0032976364 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the 27-kilobase virulence related locus (vrl) of Dichelobacter nodosus: Evidence for extrachromosomal origin
    • Billington, S. J., A. S. Huggins, P. A. Johanesen, P. K. Crellin, J. K. Cheung, M. E. Katz, C. L. Wright, V. Haring, and J. L. Rood. 1999. Complete nucleotide sequence of the 27-kilobase virulence related locus (vrl) of Dichelobacter nodosus: evidence for extrachromosomal origin. Infect. Immun. 67:1277-1286.
    • (1999) Infect. Immun. , vol.67 , pp. 1277-1286
    • Billington, S.J.1    Huggins, A.S.2    Johanesen, P.A.3    Crellin, P.K.4    Cheung, J.K.5    Katz, M.E.6    Wright, C.L.7    Haring, V.8    Rood, J.L.9
  • 9
    • 0026480991 scopus 로고
    • Chromosomal insertion sites for phages and plasmids
    • Campbell, A. M. 1992. Chromosomal insertion sites for phages and plasmids. J. Bacteriol. 174:7495-7499.
    • (1992) J. Bacteriol. , vol.174 , pp. 7495-7499
    • Campbell, A.M.1
  • 10
    • 0035253405 scopus 로고    scopus 로고
    • Analysis of six prophages in Lactococcus lactis IL1403: Different genetic structure of temperate and virulent phage populations
    • Chopin, A., A. Bolotin, A. Sorokin, S. D. Ehrlich, and M. C. Chopin. 2001. Analysis of six prophages in Lactococcus lactis IL1403: different genetic structure of temperate and virulent phage populations. Nucleic Acids Res. 29:644-651.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 644-651
    • Chopin, A.1    Bolotin, A.2    Sorokin, A.3    Ehrlich, S.D.4    Chopin, M.C.5
  • 11
    • 0037102137 scopus 로고    scopus 로고
    • A satellite phage-encoded antirepressor induces repressor aggregation and cholera toxin gene transfer
    • Davis, B. M., H. H. Kimsey, A. V. Kane, and M. K. Waldor. 2002. A satellite phage-encoded antirepressor induces repressor aggregation and cholera toxin gene transfer. EMBO J. 21:4240-4249.
    • (2002) EMBO J. , vol.21 , pp. 4240-4249
    • Davis, B.M.1    Kimsey, H.H.2    Kane, A.V.3    Waldor, M.K.4
  • 12
    • 0034682444 scopus 로고    scopus 로고
    • CTXφ, contains a hybrid genome derived from tandemly integrated elements
    • Davis, B. M., and M. K. Waldor. 2000. CTXφ, contains a hybrid genome derived from tandemly integrated elements. Proc. Natl. Acad. Sci. USA 97:8572-8577.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 8572-8577
    • Davis, B.M.1    Waldor, M.K.2
  • 13
    • 0036468520 scopus 로고    scopus 로고
    • Comparative genomics of closely related salmonellae
    • Edwards, R. A., G. J. Olsen, and S. R. Maloy. 2002. Comparative genomics of closely related salmonellae. Trends Microbiol. 10:94-99.
    • (2002) Trends Microbiol. , vol.10 , pp. 94-99
    • Edwards, R.A.1    Olsen, G.J.2    Maloy, S.R.3
  • 14
    • 0033783996 scopus 로고    scopus 로고
    • Assessing evolutionary relationships among microbes from whole-genome analysis
    • Eisen, J. A. 2000. Assessing evolutionary relationships among microbes from whole-genome analysis. Curr. Opin. Microbiol. 3:475-480.
    • (2000) Curr. Opin. Microbiol. , vol.3 , pp. 475-480
    • Eisen, J.A.1
  • 17
    • 0036566827 scopus 로고    scopus 로고
    • Two-piece tmRNA in cyanobacteria and its structural analysis
    • Gaudin, C., X. Zhou, K. P. Williams, and B. Felden. 2002. Two-piece tmRNA in cyanobacteria and its structural analysis. Nucleic Acids Res. 30:2018-2024.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 2018-2024
    • Gaudin, C.1    Zhou, X.2    Williams, K.P.3    Felden, B.4
  • 18
  • 19
    • 0032577563 scopus 로고    scopus 로고
    • S. typhimurium encodes an activator of Rho GTPases that induces membrane ruffling and nuclear responses in host cells
    • Hardt, W. D., L. M. Chen, K. E. Schuebel, X. R. Bustelo, and J. E. Galan. 1998. S. typhimurium encodes an activator of Rho GTPases that induces membrane ruffling and nuclear responses in host cells. Cell 93:815-826.
    • (1998) Cell , vol.93 , pp. 815-826
    • Hardt, W.D.1    Chen, L.M.2    Schuebel, K.E.3    Bustelo, X.R.4    Galan, J.E.5
  • 20
    • 0026760447 scopus 로고
    • Site-specific integration of the Haemophilus influenzae bacteriophage HP1. Identification of the points of recombinational strand exchange and the limits of the host attachment site
    • Hauser, M. A., and J. J. Scocca. 1992. Site-specific integration of the Haemophilus influenzae bacteriophage HP1. Identification of the points of recombinational strand exchange and the limits of the host attachment site. J. Biol. Chem. 267:6859-6864.
    • (1992) J. Biol. Chem. , vol.267 , pp. 6859-6864
    • Hauser, M.A.1    Scocca, J.J.2
  • 22
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • Henikoff, S., and J. G. Henikoff. 1992. Amino acid substitution matrices from protein blocks. Proc. Natl. Acad. Sci. USA 89:10915-10919.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 23
    • 0033179042 scopus 로고    scopus 로고
    • Transfer RNAs and pathogenicity islands
    • Hou, Y. M. 1999. Transfer RNAs and pathogenicity islands. Trends Biochem. Sci. 24:295-298.
    • (1999) Trends Biochem. Sci. , vol.24 , pp. 295-298
    • Hou, Y.M.1
  • 24
    • 0022006792 scopus 로고
    • Hin-mediated site-specific recombination requires two 26 bp recombination sites and a 60-bp recombinational enhancer
    • Johnson, R. C., and M. I. Simon. 1985. Hin-mediated site-specific recombination requires two 26 bp recombination sites and a 60-bp recombinational enhancer. Cell 41:781-791.
    • (1985) Cell , vol.41 , pp. 781-791
    • Johnson, R.C.1    Simon, M.I.2
  • 25
    • 0034056347 scopus 로고    scopus 로고
    • ssrA (tmRNA) plays a role in Salmonella enterica serovar Typhimurium pathogenesis
    • Julio, S. M., D. M. Heithoff, and M. J. Mahan. 2000. ssrA (tmRNA) plays a role in Salmonella enterica serovar Typhimurium pathogenesis. J. Bacteriol. 182:1558-1563.
    • (2000) J. Bacteriol. , vol.182 , pp. 1558-1563
    • Julio, S.M.1    Heithoff, D.M.2    Mahan, M.J.3
  • 27
    • 0034046020 scopus 로고    scopus 로고
    • The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue
    • Karzai, A. W., E. D. Roche, and R. T. Sauer. 2000. The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue. Nat. Struct. Biol. 7:449-455.
    • (2000) Nat. Struct. Biol. , vol.7 , pp. 449-455
    • Karzai, A.W.1    Roche, E.D.2    Sauer, R.T.3
  • 28
    • 0345465673 scopus 로고    scopus 로고
    • SmpB, a unique RNA-binding protein essential for the peptide-tagging activity, of SsrA (tmRNA)
    • Karzai, A. W., M. M. Susskind, and R. T. Sauer. 1999. SmpB, a unique RNA-binding protein essential for the peptide-tagging activity, of SsrA (tmRNA). EMBO J. 18:3793-3799.
    • (1999) EMBO J. , vol.18 , pp. 3793-3799
    • Karzai, A.W.1    Susskind, M.M.2    Sauer, R.T.3
  • 29
    • 0034608854 scopus 로고    scopus 로고
    • tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter
    • Keiler, K. C., L. Shapiro, and K. P. Williams. 2000. tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter. Proc. Natl. Acad. Sci. USA 97:7778-7783.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 7778-7783
    • Keiler, K.C.1    Shapiro, L.2    Williams, K.P.3
  • 30
    • 0028266653 scopus 로고
    • Excision of a P4-like cryptic prophage leads to Alp protease expression in Escherichia coli
    • Kirby, J. E., J. E. Trempy, and S. Gottesman. 1994. Excision of a P4-like cryptic prophage leads to Alp protease expression in Escherichia coli. J. Bacteriol. 176:2068-2081.
    • (1994) J. Bacteriol. , vol.176 , pp. 2068-2081
    • Kirby, J.E.1    Trempy, J.E.2    Gottesman, S.3
  • 32
    • 0036719291 scopus 로고    scopus 로고
    • Imbroglios of viral taxonomy: Genetic exchange and failings of phenetic approaches
    • Lawrence, J. G., G. F. Hatfull, and R. W. Hendrix. 2002. Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approaches. J. Bacteriol. 184:4891-4905.
    • (2002) J. Bacteriol. , vol.184 , pp. 4891-4905
    • Lawrence, J.G.1    Hatfull, G.F.2    Hendrix, R.W.3
  • 33
    • 0027208795 scopus 로고
    • Mechanisms of genome propagation and helper exploitation by satellite phage P4
    • Lindqvist, B. H., G. Deho, and R. Calendar. 1993. Mechanisms of genome propagation and helper exploitation by satellite phage P4. Microbiol. Rev. 57:683-702.
    • (1993) Microbiol. Rev. , vol.57 , pp. 683-702
    • Lindqvist, B.H.1    Deho, G.2    Calendar, R.3
  • 34
    • 0031015544 scopus 로고    scopus 로고
    • Bacteriophage T12 of Streptococcus pyogenes integrates into the gene encoding a serine tRNA
    • McShan, W. M., Y. F. Tang, and J. J. Ferretti. 1997. Bacteriophage T12 of Streptococcus pyogenes integrates into the gene encoding a serine tRNA. Mol. Microbiol. 23:719-728.
    • (1997) Mol. Microbiol. , vol.23 , pp. 719-728
    • McShan, W.M.1    Tang, Y.F.2    Ferretti, J.J.3
  • 36
    • 0033578311 scopus 로고    scopus 로고
    • Isolation of a temperate bacteriophage encoding the type III effector protein SopE from an epidemic Salmonella typhimurium strain
    • Mirold, S., W. Rabsch, M. Rohde, S. Stender, H. Tschape, H. Russmann, E. Igwe, and W. D. Hardt. 1999. Isolation of a temperate bacteriophage encoding the type III effector protein SopE from an epidemic Salmonella typhimurium strain. Proc. Natl. Acad. Sci. USA 96:9845-9850.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 9845-9850
    • Mirold, S.1    Rabsch, W.2    Rohde, M.3    Stender, S.4    Tschape, H.5    Russmann, H.6    Igwe, E.7    Hardt, W.D.8
  • 37
    • 0035843908 scopus 로고    scopus 로고
    • Genes lost and genes found: Evolution of bacterial pathogenesis and symbiosis
    • Ochman, H., and N. A. Moran. 2001. Genes lost and genes found: evolution of bacterial pathogenesis and symbiosis. Science 292:1096-1099.
    • (2001) Science , vol.292 , pp. 1096-1099
    • Ochman, H.1    Moran, N.A.2
  • 39
    • 0035847043 scopus 로고    scopus 로고
    • Selfish DNA and the origin of genes
    • Ogata, H., S. Audic, and J. M. Claverie. 2001. Selfish DNA and the origin of genes. Science 291:252-253.
    • (2001) Science , vol.291 , pp. 252-253
    • Ogata, H.1    Audic, S.2    Claverie, J.M.3
  • 40
    • 0035477452 scopus 로고    scopus 로고
    • Diversification of Escherichia coli genomes: Are bacteriophages the major contributors?
    • Ohnishi, M., K. Kurokawa, and T. Hayashi. 2001. Diversification of Escherichia coli genomes: are bacteriophages the major contributors? Trends Microbiol. 9:481-485.
    • (2001) Trends Microbiol. , vol.9 , pp. 481-485
    • Ohnishi, M.1    Kurokawa, K.2    Hayashi, T.3
  • 42
    • 0029830068 scopus 로고    scopus 로고
    • Positions of strand exchange in mycobacteriophage L5 integration and characterization of the attB site
    • Pena, C. E., J. E. Stoner, and G. F. Hatfull. 1996. Positions of strand exchange in mycobacteriophage L5 integration and characterization of the attB site. J. Bacteriol. 178:5533-5536.
    • (1996) J. Bacteriol. , vol.178 , pp. 5533-5536
    • Pena, C.E.1    Stoner, J.E.2    Hatfull, G.F.3
  • 44
    • 0032529341 scopus 로고    scopus 로고
    • The late-expressed region of the temperate coliphage 186 genome
    • Portelli, R., I. B. Dodd, Q. Xue, and J. B. Egan. 1998. The late-expressed region of the temperate coliphage 186 genome. Virology 248:117-130.
    • (1998) Virology , vol.248 , pp. 117-130
    • Portelli, R.1    Dodd, I.B.2    Xue, Q.3    Egan, J.B.4
  • 45
    • 0028215041 scopus 로고
    • Role for 10Sa RNA in the growth of lambda-P22 hybrid phage
    • Retallack, D. M., L. L. Johnson, and D. I. Friedman. 1994. Role for 10Sa RNA in the growth of lambda-P22 hybrid phage. J. Bacteriol. 176:2082-2089.
    • (1994) J. Bacteriol. , vol.176 , pp. 2082-2089
    • Retallack, D.M.1    Johnson, L.L.2    Friedman, D.I.3
  • 46
    • 0017794180 scopus 로고
    • Evolution of the bacterial genome
    • Riley, M., and A. Anilionis. 1978. Evolution of the bacterial genome. Annu. Rev. Microbiol. 32:519-560.
    • (1978) Annu. Rev. Microbiol. , vol.32 , pp. 519-560
    • Riley, M.1    Anilionis, A.2
  • 47
    • 0028338908 scopus 로고
    • Acquisition and rearrangement of sequence motifs in the evolution of bacteriophage tail fibres
    • Sandmeier, H. 1994. Acquisition and rearrangement of sequence motifs in the evolution of bacteriophage tail fibres. Mol. Microbiol. 12:343-350.
    • (1994) Mol. Microbiol. , vol.12 , pp. 343-350
    • Sandmeier, H.1
  • 48
    • 0027941644 scopus 로고
    • Structure of the P22 att site: Conservation and divergence in the lambda motif of recombinogenic complexes
    • Smith-Mungo, L., I. T. Chan, and A. Landy. 1994. Structure of the P22 att site: conservation and divergence in the lambda motif of recombinogenic complexes. J. Biol. Chem. 269:20798-20805.
    • (1994) J. Biol. Chem. , vol.269 , pp. 20798-20805
    • Smith-Mungo, L.1    Chan, I.T.2    Landy, A.3
  • 49
    • 0030848871 scopus 로고    scopus 로고
    • Primary structure requirements for in vivo activity and bidirectional function of the transcription terminator shared by the oppositely oriented skc/rel-orf1 genes of Streptococcus equisimilis H46A
    • Steiner, K., and H. Malke. 1997. Primary structure requirements for in vivo activity and bidirectional function of the transcription terminator shared by the oppositely oriented skc/rel-orf1 genes of Streptococcus equisimilis H46A. Mol. Gen. Genet. 255:611-618.
    • (1997) Mol. Gen. Genet. , vol.255 , pp. 611-618
    • Steiner, K.1    Malke, H.2
  • 50
    • 0017864518 scopus 로고
    • Molecular genetics of bacteriophage P22
    • Susskind, M. M., and D. Botstein. 1978. Molecular genetics of bacteriophage P22. Microbiol. Rev. 42:385-413.
    • (1978) Microbiol. Rev. , vol.42 , pp. 385-413
    • Susskind, M.M.1    Botstein, D.2
  • 51
    • 0018926629 scopus 로고
    • Invertible DNA determines host specificity of bacteriophage mu
    • van de Putte, P., S. Cramer, and M. Giphart-Gassler. 1980. Invertible DNA determines host specificity of bacteriophage mu. Nature 286:218-222.
    • (1980) Nature , vol.286 , pp. 218-222
    • Van de Putte, P.1    Cramer, S.2    Giphart-Gassler, M.3
  • 52
    • 0030722947 scopus 로고    scopus 로고
    • Evolutionary genetics of the isocitrate dehydrogenase gene (icd) in Escherichia coli and Salmonella enterica
    • Wang, F. S., T. S. Whittam, and R. K. Selander. 1997. Evolutionary genetics of the isocitrate dehydrogenase gene (icd) in Escherichia coli and Salmonella enterica. J. Bacteriol. 179:6551-6559.
    • (1997) J. Bacteriol. , vol.179 , pp. 6551-6559
    • Wang, F.S.1    Whittam, T.S.2    Selander, R.K.3
  • 53
    • 0035395606 scopus 로고    scopus 로고
    • Identification of novel small RNAs using comparative genomics and microarrays
    • Wassarman, K. M., F. Repoila, C. Rosenow, G. Storz, and S. Gottesman. 2001. Identification of novel small RNAs using comparative genomics and microarrays. Genes Dev. 15:1637-1651.
    • (2001) Genes Dev. , vol.15 , pp. 1637-1651
    • Wassarman, K.M.1    Repoila, F.2    Rosenow, C.3    Storz, G.4    Gottesman, S.5
  • 54
    • 0036567510 scopus 로고    scopus 로고
    • Descent of a split RNA
    • Williams, K. P. 2002. Descent of a split RNA. Nucleic Acids Res. 30:2025-2030.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 2025-2030
    • Williams, K.P.1
  • 55
    • 0037082414 scopus 로고    scopus 로고
    • Integration sites for genetic elements in prokaryotic tRNA and tmRNA genes: Sublocation preference of integrase subfamilies
    • Williams, K. P. 2002. Integration sites for genetic elements in prokaryotic tRNA and tmRNA genes: sublocation preference of integrase subfamilies. Nucleic Acids Res. 30:866-875.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 866-875
    • Williams, K.P.1
  • 57
    • 0029806327 scopus 로고    scopus 로고
    • SopE, a secreted protein of Salmonella dublin, is translocated into the target eukaryotic cell via a sip-dependent mechanism and promotes bacterial entry
    • Wood, M. W., R. Rosqvist, P. B. Mullan, M. H. Edwards, and E. E. Galyov. 1996. SopE, a secreted protein of Salmonella dublin, is translocated into the target eukaryotic cell via a sip-dependent mechanism and promotes bacterial entry. Mol. Microbiol. 22:327-338.
    • (1996) Mol. Microbiol. , vol.22 , pp. 327-338
    • Wood, M.W.1    Rosqvist, R.2    Mullan, P.B.3    Edwards, M.H.4    Galyov, E.E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.