Intra- and intermolecular interactions between cyclic-AMP receptor protein and DNA: Ab initio fragment molecular orbital study

Journal of Computational Chemistry

Volumn 27, Issue 8, 2006, Pages 948-960

  Fukuzawa, Kaori ^a,b   Komeiji, Yuto ^c   Mochizuki, Yuji ^b,d   Kato, Akifumi ^a   Nakano, Tatsuya ^b,e   Tanaka, Shigenori ^b,f  

^a MIZUHO INFORMATION AND RESEARCH INSTITUTE   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^c NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^d INSTITUTE OF INDUSTRIAL SCIENCE   (Japan)

^e NATIONAL INSTITUTE OF HEALTH SCIENCES   (Japan)

^f KOBE UNIVERSITY   (Japan)

Author keywords

Ab initio fragment molecular orbital (FMO) method; Charge transfer; Cyclic amp receptor protein; DNA; Dna stacking and hydrogen bonding; Molecular interaction; Protein dna binding

Indexed keywords

AB INITIO FRAGMENT MOLECULAR ORBITAL (FMO) METHOD; CYCLIC-AMP RECEPTOR PROTEINS; DNA STACKING AND HYDROGEN BONDING; MOLECULAR INTERACTIONS; PROTEIN-DNA BINDING;

AMINO ACIDS; CHARGE TRANSFER; DNA; ELECTROSTATICS; HYDROGEN BONDS; PROTEINS; QUANTUM THEORY; STACKING FAULTS;

MOLECULAR DYNAMICS;

CYCLIC AMP BINDING PROTEIN; DNA; DNA BINDING PROTEIN;

ALGORITHM; ARTICLE; BASE PAIRING; CHEMICAL STRUCTURE; CHEMISTRY; HYDROGEN BOND; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; QUANTUM THEORY;

ALGORITHMS; BASE PAIRING; BASE SEQUENCE; CYCLIC AMP RECEPTOR PROTEIN; DNA; DNA-BINDING PROTEINS; HYDROGEN BONDING; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; QUANTUM THEORY;

EID: 33646586407     PISSN: 01928651     EISSN: 1096987X     Source Type: Journal    
DOI: 10.1002/jcc.20399     Document Type: Article

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