-
1
-
-
0035546073
-
Adaptive hitchhiking effects on genome variability
-
Andolfatto, P. 2001. Adaptive hitchhiking effects on genome variability. Curr. Opin. Genet. Dev. 11:635-641.
-
(2001)
Curr. Opin. Genet. Dev.
, vol.11
, pp. 635-641
-
-
Andolfatto, P.1
-
2
-
-
0001866374
-
Selection, recombination, and DNA polymorphism in Drosophila
-
G. B. Golding, ed. Chapman and Hall, New York
-
Aquadro, C. F., D. J. Begun, and E. C. Kindahl. 1994. Selection, recombination, and DNA polymorphism in Drosophila. Pp. 46-56 in G. B. Golding, ed. Non-neutral evolution: theories and molecular data. Chapman and Hall, New York.
-
(1994)
Non-neutral Evolution: Theories and Molecular Data
, pp. 46-56
-
-
Aquadro, C.F.1
Begun, D.J.2
Kindahl, E.C.3
-
3
-
-
0036909632
-
Estimating divergence times from molecular data on phylogenetic and population genetic timescales
-
Arbogast, B. S., S. V. Edwards, J. Wakeley, P. Beerli, and J. B. Slowinski. 2002. Estimating divergence times from molecular data on phylogenetic and population genetic timescales. Annu. Rev. Ecol. Syst. 33:707-740.
-
(2002)
Annu. Rev. Ecol. Syst.
, vol.33
, pp. 707-740
-
-
Arbogast, B.S.1
Edwards, S.V.2
Wakeley, J.3
Beerli, P.4
Slowinski, J.B.5
-
4
-
-
0034705169
-
Reduced X-linked nucleotide polymorphism in Drosophila simulas
-
USA
-
Begun, D. J., and P. Whitney. 2000. Reduced X-linked nucleotide polymorphism in Drosophila simulas. Proc. Natl. Acad. Sci. USA 97:5960-5965.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, pp. 5960-5965
-
-
Begun, D.J.1
Whitney, P.2
-
5
-
-
0034632812
-
Unexpectedly similar rates of nucleotide substitution found in male and female hominids
-
Bohossian, H. B., H. Skaletsky, and D. C. Page. 2000. Unexpectedly similar rates of nucleotide substitution found in male and female hominids. Nature 406:622-625.
-
(2000)
Nature
, vol.406
, pp. 622-625
-
-
Bohossian, H.B.1
Skaletsky, H.2
Page, D.C.3
-
6
-
-
0029800853
-
Background selection and patterns of genetic diversity in Drosophila melanogaster
-
Charlesworth, B. 1996. Background selection and patterns of genetic diversity in Drosophila melanogaster. Genet. Res. 68:131-149.
-
(1996)
Genet. Res.
, vol.68
, pp. 131-149
-
-
Charlesworth, B.1
-
7
-
-
0023501735
-
The relative rates of evolution of sex chromosomes and autosomes
-
Charlesworth, B., J. A. Coyne, and N. H. Barton. 1987. The relative rates of evolution of sex chromosomes and autosomes. Am. Nat. 130:113-146.
-
(1987)
Am. Nat.
, vol.130
, pp. 113-146
-
-
Charlesworth, B.1
Coyne, J.A.2
Barton, N.H.3
-
8
-
-
0027305597
-
The effect of deleterious mutations on neutral molecular variation
-
Charlesworth, B., M. T. Morgan, and D. Charlesworth. 1993. The effect of deleterious mutations on neutral molecular variation. Genetics 134:1289-1303.
-
(1993)
Genetics
, vol.134
, pp. 1289-1303
-
-
Charlesworth, B.1
Morgan, M.T.2
Charlesworth, D.3
-
9
-
-
0035130163
-
Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees
-
Chen, F.-C., and W.-H. Li. 2001. Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. Am. J. Hum. Genet. 68:444-456.
-
(2001)
Am. J. Hum. Genet.
, vol.68
, pp. 444-456
-
-
Chen, F.-C.1
Li, W.-H.2
-
10
-
-
24344500211
-
Initial sequence of the chimpanzee genome and comparison with the human genome
-
Chimpanzee Sequencing and Analysis Consortium. 2005. Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437:69-87.
-
(2005)
Nature
, vol.437
, pp. 69-87
-
-
-
11
-
-
3042700117
-
Evidence for substantial fine-scale variation in recombination rates across the human genome
-
Crawford, D. C., T. Bhangale, N. Li, G. Hellenthal, M. J. Rieder, D. A. Nickerson, and M. Stephens. 2004. Evidence for substantial fine-scale variation in recombination rates across the human genome. Nat. Genet. 36:700-706.
-
(2004)
Nat. Genet.
, vol.36
, pp. 700-706
-
-
Crawford, D.C.1
Bhangale, T.2
Li, N.3
Hellenthal, G.4
Rieder, M.J.5
Nickerson, D.A.6
Stephens, M.7
-
12
-
-
0036094907
-
Genomewide comparison of DNA sequences between humans and chimpanzees
-
Ebersberger, I., D. Metzler, C. Schwarz, and S. Pääbo. 2002. Genomewide comparison of DNA sequences between humans and chimpanzees. Am. J. Hum. Genet. 70:1490-1497.
-
(2002)
Am. J. Hum. Genet.
, vol.70
, pp. 1490-1497
-
-
Ebersberger, I.1
Metzler, D.2
Schwarz, C.3
Pääbo, S.4
-
13
-
-
0034496840
-
Gene divergence, population divergence, and the variance in coalescence time in phylogenographic studies
-
Edwards, S. V., and P. Beerli. 2000. Gene divergence, population divergence, and the variance in coalescence time in phylogenographic studies. Evolution 54:1839-1854.
-
(2000)
Evolution
, vol.54
, pp. 1839-1854
-
-
Edwards, S.V.1
Beerli, P.2
-
14
-
-
0037016456
-
Construction and analysis of a human-chimpanzee comparative clone map
-
Fujiyama, A., H. Watanabe, A. Toyoda, T. D. Taylor, T. Itoh, et al. (17 co-authors). 2002. Construction and analysis of a human-chimpanzee comparative clone map. Science 295:131-134.
-
(2002)
Science
, vol.295
, pp. 131-134
-
-
Fujiyama, A.1
Watanabe, H.2
Toyoda, A.3
Taylor, T.D.4
Itoh, T.5
-
15
-
-
0041317270
-
Speciation and inversion: Chimps and humans
-
Hey, J. 2003. Speciation and inversion: chimps and humans. Bioessays 25(9):825-828.
-
(2003)
Bioessays
, vol.25
, Issue.9
, pp. 825-828
-
-
Hey, J.1
-
16
-
-
3142714474
-
Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis
-
Hey, J., and R. Nielsen. 2004. Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 167:747-760.
-
(2004)
Genetics
, vol.167
, pp. 747-760
-
-
Hey, J.1
Nielsen, R.2
-
17
-
-
13844313862
-
Whole-genome patterns of common DNA variation in three human populations
-
Hinds, D. A., L. L. Stuve, G. B. Nilsen, E. Halperin, E. Eskin, D. G. Ballinger, K. A. Frazer, and D. R. Cox. 2005. Whole-genome patterns of common DNA variation in three human populations. Science 307:1072-1079.
-
(2005)
Science
, vol.307
, pp. 1072-1079
-
-
Hinds, D.A.1
Stuve, L.L.2
Nilsen, G.B.3
Halperin, E.4
Eskin, E.5
Ballinger, D.G.6
Frazer, K.A.7
Cox, D.R.8
-
18
-
-
0036184745
-
Generating samples under a Wright-Fisher neutral model of genetic variation
-
Hudson, R. R. 2002. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18:337-338.
-
(2002)
Bioinformatics
, vol.18
, pp. 337-338
-
-
Hudson, R.R.1
-
19
-
-
0038817784
-
The pattern of polymorphism on human chromosome 21
-
Innan, H., B. Padhukasahasram, and M. Nordborg. 2003. The pattern of polymorphism on human chromosome 21. Genome Res. 13:1158-1168.
-
(2003)
Genome Res.
, vol.13
, pp. 1158-1168
-
-
Innan, H.1
Padhukasahasram, B.2
Nordborg, M.3
-
20
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
International Human Genome Sequencing Consortium. 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
21
-
-
0033527718
-
Extensive nuclear DNA sequence diversity among chimpanzees
-
Kaessmann, H., V. Wiebe, and S. Pääbo. 1999. Extensive nuclear DNA sequence diversity among chimpanzees. Science 286: 1159-1162.
-
(1999)
Science
, vol.286
, pp. 1159-1162
-
-
Kaessmann, H.1
Wiebe, V.2
Pääbo, S.3
-
22
-
-
0035132473
-
Great ape DNA sequences reveal a reduced diversity and an expansion in humans
-
Kaessmann, H., V. Wiebe, G. Weiss, and S. Pääbo. 2001. Great ape DNA sequences reveal a reduced diversity and an expansion in humans. Nat. Genet. 27:155-156.
-
(2001)
Nat. Genet.
, vol.27
, pp. 155-156
-
-
Kaessmann, H.1
Wiebe, V.2
Weiss, G.3
Pääbo, S.4
-
23
-
-
0024372736
-
The "hitchhiking" effect revisited
-
Kaplan, N. L., R. R. Hudson, and C. H. Langley. 1989. The "hitchhiking" effect revisited. Genetics 123:887-899.
-
(1989)
Genetics
, vol.123
, pp. 887-899
-
-
Kaplan, N.L.1
Hudson, R.R.2
Langley, C.H.3
-
24
-
-
0042573987
-
Gene diversity patterns at 10 X-chromosomal loci in humans and chimpanzees
-
Kitano, T., C. Schwarz, B. Nickel, and S. Pääbo. 2003. Gene diversity patterns at 10 X-chromosomal loci in humans and chimpanzees. Mol. Biol. Evol. 20:1282-1289.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 1282-1289
-
-
Kitano, T.1
Schwarz, C.2
Nickel, B.3
Pääbo, S.4
-
25
-
-
0032580152
-
A molecular timescale for vertebrate evolution
-
Kumar, S., and S. B. Hedges. 1998. A molecular timescale for vertebrate evolution. Nature 392:917-920.
-
(1998)
Nature
, vol.392
, pp. 917-920
-
-
Kumar, S.1
Hedges, S.B.2
-
26
-
-
0003421005
-
-
Sinauer Associates, Inc., Sunderland, Mass.
-
Li, W.-H. 1997. Molecular evolution. Sinauer Associates, Inc., Sunderland, Mass.
-
(1997)
Molecular Evolution
-
-
Li, W.-H.1
-
27
-
-
0642285316
-
Comment on "chromosomal speciation and molecular divergence - Accelerated evolution in rearranged chromosomes."
-
Lu, J., W.-H. Li, and C.-I. Wu. 2003. Comment on "chromosomal speciation and molecular divergence - accelerated evolution in rearranged chromosomes." Science 302:988b.
-
(2003)
Science
, vol.302
-
-
Lu, J.1
Li, W.-H.2
Wu, C.-I.3
-
28
-
-
0036215045
-
Inferring the history of speciation from multilocus DNA sequence data: The case of Drosophila pseudoobscura and close relatives
-
Machado, C. A., R. M. Kliman, J. A. Markert, and J. Hey. 2002. Inferring the history of speciation from multilocus DNA sequence data: the case of Drosophila pseudoobscura and close relatives. Mol. Biol. Evol. 19:472-488.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 472-488
-
-
Machado, C.A.1
Kliman, R.M.2
Markert, J.A.3
Hey, J.4
-
29
-
-
0037061501
-
Strong male-driven evolution of DNA sequences in humans and apes
-
Makova, K. D., and W.-H. Li. 2002. Strong male-driven evolution of DNA sequences in humans and apes. Nature 416:624-626.
-
(2002)
Nature
, vol.416
, pp. 624-626
-
-
Makova, K.D.1
Li, W.-H.2
-
30
-
-
0346734143
-
Markov chain Monte Carlo without likelihoods
-
USA
-
Marjoram, P., J. Molitor, V. Plagnol, and S. Tavaré. 2003. Markov chain Monte Carlo without likelihoods. Proc. Natl. Acad. Sci. USA 100:15324-15328.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 15324-15328
-
-
Marjoram, P.1
Molitor, J.2
Plagnol, V.3
Tavaré, S.4
-
31
-
-
0016220238
-
The hitchhiking effect of a favourable gene
-
Maynard Smith, J., and J. Haigh. 1974. The hitchhiking effect of a favourable gene. Genet. Res. Camb. 23:23-35.
-
(1974)
Genet. Res. Camb.
, vol.23
, pp. 23-35
-
-
Maynard Smith, J.1
Haigh, J.2
-
33
-
-
2142773942
-
The fine-scale structure of recombination rate variation in the human genome
-
McVean, G. A. T., S. R. Myers, S. Hunt, P. Deloukas, D. R. Bentley, and P. Donnelly. 2004. The fine-scale structure of recombination rate variation in the human genome. Science 304:581-584.
-
(2004)
Science
, vol.304
, pp. 581-584
-
-
McVean, G.A.T.1
Myers, S.R.2
Hunt, S.3
Deloukas, P.4
Bentley, D.R.5
Donnelly, P.6
-
34
-
-
0023508919
-
Male-driven molecular evolution: A model and nucleotide sequence analysis
-
Miyata, T., H. Hayashida, K. Kuma, K. Mitsuyasa, and T. Yasunaga. 1987. Male-driven molecular evolution: a model and nucleotide sequence analysis. Cold Spring Harbor Symp. Quant. Biol. 52:863-867.
-
(1987)
Cold Spring Harbor Symp. Quant. Biol.
, vol.52
, pp. 863-867
-
-
Miyata, T.1
Hayashida, H.2
Kuma, K.3
Mitsuyasa, K.4
Yasunaga, T.5
-
35
-
-
0037358721
-
Accumulating postzygotic isolation genes in parapatry: A new twist on chromosomal speciation
-
Navarro, A., and N. H. Barton. 2003a. Accumulating postzygotic isolation genes in parapatry: a new twist on chromosomal speciation. Evolution 57:447-459.
-
(2003)
Evolution
, vol.57
, pp. 447-459
-
-
Navarro, A.1
Barton, N.H.2
-
36
-
-
0037432734
-
Chromosomal speciation and molecular divergence - Accelerated evolution in rearranged chromosomes
-
_. 2003b. Chromosomal speciation and molecular divergence - accelerated evolution in rearranged chromosomes. Science 300:321-324.
-
(2003)
Science
, vol.300
, pp. 321-324
-
-
-
37
-
-
13744253303
-
Inferring the mode of speciation from genomic data: A study of the great apes
-
Osada, N., and C.-I. Wu. 2005. Inferring the mode of speciation from genomic data: a study of the great apes. Genetics 169: 259-264.
-
(2005)
Genetics
, vol.169
, pp. 259-264
-
-
Osada, N.1
Wu, C.-I.2
-
38
-
-
0035400605
-
Chromosomal rearrangements and speciation
-
Rieseberg, L. H. 2001. Chromosomal rearrangements and speciation. Trends Genet. 16:351-358.
-
(2001)
Trends Genet.
, vol.16
, pp. 351-358
-
-
Rieseberg, L.H.1
-
39
-
-
0001486658
-
The relationship between coalescence times and population divergence times
-
M. Slatkin and M. Veuille, eds. Oxford University Press, Oxford
-
Rosenberg, N., and M. W. Feldman. 2002. The relationship between coalescence times and population divergence times. Pp. 130-164 in M. Slatkin and M. Veuille, eds. Modern developments in theoretical population genetics. Oxford University Press, Oxford.
-
(2002)
Modern Developments in Theoretical Population Genetics
, pp. 130-164
-
-
Rosenberg, N.1
Feldman, M.W.2
-
40
-
-
0035865322
-
A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
-
Sachidanandam, R., D. Weissman, S. C. Schmidt, J. M. Kakol, L. D. Stein, and the International SNP Map Working Group. 2001. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409: 928-933.
-
(2001)
Nature
, vol.409
, pp. 928-933
-
-
Sachidanandam, R.1
Weissman, D.2
Schmidt, S.C.3
Kakol, J.M.4
Stein, L.D.5
-
41
-
-
4644325606
-
Ancestral population sizes and species divergence times in the primate lineage on the basis of intron and BAC end sequences
-
Satta, Y., M. Hickerson, H. Watanabe, C. O'hUigin, and J. Klein. 2004. Ancestral population sizes and species divergence times in the primate lineage on the basis of intron and BAC end sequences. J. Mol. Evol. 59:478-487.
-
(2004)
J. Mol. Evol.
, vol.59
, pp. 478-487
-
-
Satta, Y.1
Hickerson, M.2
Watanabe, H.3
O'hUigin, C.4
Klein, J.5
-
42
-
-
0346728470
-
The X chromosome in population genetics
-
Schaffner, S. F. 2004. The X chromosome in population genetics. Nat. Rev. Genet. 5:43-51.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 43-51
-
-
Schaffner, S.F.1
-
43
-
-
0027179020
-
Potential problems in estimating the male-to-female mutation rate ratio from DNA sequence data
-
Shimmin, L. C., B. H.-J. Chang, D. Hewett-Emmett, and W.-H. Li. 1993. Potential problems in estimating the male-to-female mutation rate ratio from DNA sequence data. J. Mol. Evol. 37:160-166.
-
(1993)
J. Mol. Evol.
, vol.37
, pp. 160-166
-
-
Shimmin, L.C.1
Chang, B.H.-J.2
Hewett-Emmett, D.3
Li, W.-H.4
-
44
-
-
0022919117
-
An attempt to estimate the effective size of the ancestral species common to two extant species from which homologous genes sequenced
-
Takahata, N. 1986. An attempt to estimate the effective size of the ancestral species common to two extant species from which homologous genes sequenced. Genet. Res. 48:187-190.
-
(1986)
Genet. Res.
, vol.48
, pp. 187-190
-
-
Takahata, N.1
-
45
-
-
0030895289
-
Evolution of the primate lineage leading to modern humans: Phylogenetic and demographic inferences from DNA sequences
-
USA
-
Takahata, N., and Y. Satta. 1997. Evolution of the primate lineage leading to modern humans: phylogenetic and demographic inferences from DNA sequences. Proc. Natl. Acad. Sci. USA 94:4811-4815.
-
(1997)
Proc. Natl. Acad. Sci.
, vol.94
, pp. 4811-4815
-
-
Takahata, N.1
Satta, Y.2
-
46
-
-
0029415835
-
Divergence time and population size in the lineage leading to modern humans
-
Takahata, N., Y. Satta, and J. Klein. 1995. Divergence time and population size in the lineage leading to modern humans. Theor. Popul. Biol. 48:198-221.
-
(1995)
Theor. Popul. Biol.
, vol.48
, pp. 198-221
-
-
Takahata, N.1
Satta, Y.2
Klein, J.3
-
47
-
-
0036688092
-
The effect of migration during the divergence
-
Teshima, K. M., and F. Tajima. 2002. The effect of migration during the divergence. Theor. Popul. Biol. 62:81-95.
-
(2002)
Theor. Popul. Biol.
, vol.62
, pp. 81-95
-
-
Teshima, K.M.1
Tajima, F.2
-
48
-
-
0030174857
-
Distinguishing migration from isolation using the variance of pairwise differences
-
Wakeley, J. 1996. Distinguishing migration from isolation using the variance of pairwise differences. Theor. Popul. Biol. 49:369-386.
-
(1996)
Theor. Popul. Biol.
, vol.49
, pp. 369-386
-
-
Wakeley, J.1
-
49
-
-
0031018637
-
Estimating ancestral population parameters
-
Wakeley, J., and J. Hey. 1997. Estimating ancestral population parameters. Genetics 145:847-855.
-
(1997)
Genetics
, vol.145
, pp. 847-855
-
-
Wakeley, J.1
Hey, J.2
-
50
-
-
0037277564
-
Estimating ancestral population sizes and divergence times
-
Wall, J. D. 2003. Estimating ancestral population sizes and divergence times. Genetics 163:395-404.
-
(2003)
Genetics
, vol.163
, pp. 395-404
-
-
Wall, J.D.1
-
51
-
-
0003243515
-
Gene flow and natural selection in the origin of Drosophila pseudoobscura and close relatives
-
Wang, R.-L., J. Wakeley, and J. Hey. 1997. Gene flow and natural selection in the origin of Drosophila pseudoobscura and close relatives. Genetics 147:1091-1106.
-
(1997)
Genetics
, vol.147
, pp. 1091-1106
-
-
Wang, R.-L.1
Wakeley, J.2
Hey, J.3
-
52
-
-
0035677674
-
The genic view of the process of speciation
-
Wu, C.-I. 2001. The genic view of the process of speciation. J. Evol. Biol. 14:851-865.
-
(2001)
J. Evol. Biol.
, vol.14
, pp. 851-865
-
-
Wu, C.-I.1
-
54
-
-
0036961518
-
Likelihood and Bayes estimation of ancestral population sizes in hominoids using data from multiple loci
-
Yang, Z. 2002. Likelihood and Bayes estimation of ancestral population sizes in hominoids using data from multiple loci. Genetics 162:1811-1823.
-
(2002)
Genetics
, vol.162
, pp. 1811-1823
-
-
Yang, Z.1
-
55
-
-
2442687870
-
Testing the chromosomal speciation hypothesis for humans and chimpanzees
-
Zhang, J., X. Wang, and O. Podlaha. 2004. Testing the chromosomal speciation hypothesis for humans and chimpanzees. Genome Res. 14:845-851.
-
(2004)
Genome Res.
, vol.14
, pp. 845-851
-
-
Zhang, J.1
Wang, X.2
Podlaha, O.3
|