Site-specific fluorescent and affinity labelling of RNA by using a small engineered twin ribozyme

ChemBioChem

Volumn 6, Issue 12, 2005, Pages 2158-2162

  Vauléon, Stéphanie ^a   Ivanov, Sergei A ^a   Gwiazda, Slawomir ^a   Müller, Sabine ^a  

^a RUHR UNIVERSITY BOCHUM   (Germany)

Author keywords

Engineering; Labeling; Modified nucleotides; Ribozymes; RNA

Indexed keywords

FLUORESCENT DYE; RIBOZYME; CARBOCYANINE; CYANINE DYE 5; FLUORESCEIN; RNA;

AFFINITY LABELING; ARTICLE; CHEMICAL LABELING; GENETIC ENGINEERING; PRIORITY JOURNAL; RNA ANALYSIS; RNA LABELING; RNA SEQUENCE; RNA SYNTHESIS; CHEMISTRY; GENETICS; SITE DIRECTED MUTAGENESIS;

AFFINITY LABELS; CARBOCYANINES; FLUORESCEIN; FLUORESCENT DYES; GENETIC ENGINEERING; MUTAGENESIS, SITE-DIRECTED; RNA; RNA, CATALYTIC;

EID: 33646544650     PISSN: 14394227     EISSN: 14397633     Source Type: Journal    
DOI: 10.1002/cbic.200500215     Document Type: Article

References (24)

1. a) M. Menger, F. Eckstein, D. Porschke, Nucleic Acids Res. 2000, 28, 4428-4434;
2. b) S. K. Silverman, T. R. Cech, Biochemistry 1999, 38, 14224-14237;
3. c) D. A. Lafontaine, D. G. Norman, D. M. J. Lilley, EMBO J. 2002, 21, 2461-2471;
4. d) D. J. Earnshaw, B. Masquida, S. Müller, S. T. Sigurdsson, F. Eckstein, E. Westhof, M. J. Gait, J. Mol. Biol. 1997, 274, 197-212;
5. e) A. A. Szewczak, A. B. Kosek, J. A. Piccirilli, S. A. Strobel, Biochemistry 2002, 41, 2516-2525;
6. f) J. Rappsilber, U. Ryder, A. I. Lamond, M. Mann, Genome Res. 2002, 12, 1231-1245;
7. g) O. Schiemann, A. Weber, T. E. Edwards, T. F. Prisner, S. T. Sigurdsson, J. Am. Chem. Soc. 2003, 125, 3434-3435.
8. a) R. Welz, K. Bossmann, C. Klug, C. Schmidt, H.-J. Fritz, S. Müller, Angew. Chem. 2003, 115, 2526-2530;
9. Angew. Chem. Int. Ed. 2003, 42, 2424-2427;
10. b) S. A. Ivanov, S. Vauléon, S. Müller, FEBS J. 2005, 272, 4464-4474.
11. a) J. R. Sampson, O. C. Uhlenbeck, Proc. Natl. Acad. Sci. USA 1988, 85, 1033-1037;
12. b) B. K. Oh, N. R. Pace, Nucleic Acids Res. 1994, 22, 4087-4094.
13. Y. L. Chiu, T. M. Rana, RNA 2003, 9, 1034-1048.
14. a) G. Smith, T. R. Sosnick, N. F. Scherer, T. Pan, RNA 2005, 11, 234-239;
15. b) M. Dorywalska, S. C. Blanchard, R. L. Gonzalez, Jr, H. D. Kim, S. Chu, J. D. Puglisi, Nucleic Acids Res. 2005, 33, 182-189.
16. a) X. Zhuang, H. Kim, M. J. Pereira, H. P. Babcock, N. G. Walter, S. Chu, Science 2002, 296, 1473-1476;
17. b) M. K. Nahas, T. J. Wilson, S. Hohng, K. Jarvie, D. M. J. Lilley, T. Ha, Nat. Struct. Mol. Biol. 2004, 11, 1107-1113.
18. a) J. M. Ogle, F. V. Murphy, M. J. Tarry, V. Ramakrishnan, Cell 2002, 111, 721-732;
19. b) D. Klostermeier, P. Sears, C. H. Wong, D. P. Millar, J. R. Williamson, Nucleic Acids Res. 2004, 32, 2707-2715.
20. a) C. L. Will, R. Lührmann, Curr. Opin. Cell Biol. 2001, 13, 290-301;
21. b) M. M. Golas, B. Sander, C. L. Will, R. Lührmann, H. Stark, Mol. Cell 2005, 17, 869-883.
22. a) B. Fürtig, C. Richter, J. Wöhnert, H. Schwalbe, ChemBioChem 2003, 4, 936-962;
23. b) P. Z. Qin, T. Dieckmann, Curr. Opin. Struct. Biol. 2004, 14, 350-359.
24. A. Berzal-Herranz, S. Joseph, B. M. Chowrira, S. E. Butcher, J. M. Burke, EMBO J. 1993, 12, 2567-2573.