Activity-based matrix metallo-protease enrichment using automated, inhibitor affinity extractions

Journal of Proteome Research

Volumn 5, Issue 5, 2006, Pages 1186-1194

  Freije, J Robert ^a   Klein, Theo ^a   Ooms, J A ^b   Franke, Jan Piet ^a   Bischoff, Rainer ^a  

^a UNIVERSITY MEDICAL CENTER GRONINGEN   (Netherlands)

^b Spark Holland BV ^*  (Netherlands)

Author keywords

Affinity solid phase extraction; Automation; Inhibitor; Matrix metallo proteases; Proteomics

Indexed keywords

COLLAGENASE 3; GELATIN; HYDROXAMIC ACID; INTERSTITIAL COLLAGENASE; MACROPHAGE ELASTASE; MATRILYSIN; MATRIX METALLOPROTEINASE INHIBITOR; NEUTROPHIL COLLAGENASE; SORBENT; STROMELYSIN 2;

ADSORPTION; ARTICLE; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME INACTIVATION; FLOW RATE; HUMAN; IC 50; PRIORITY JOURNAL; PROTEIN DOMAIN; RHEUMATOID ARTHRITIS; SOLID PHASE EXTRACTION; SYNOVIAL FLUID; ZYMOGRAPHY;

ADSORPTION; AUTOMATION; HUMANS; INHIBITORY CONCENTRATION 50; LIGANDS; MATRIX METALLOPROTEINASES; PROTEASE INHIBITORS; PROTEOMICS; SYNOVIAL FLUID;

EID: 33646538109     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr050483b     Document Type: Article

References (33)

1. Stocker, W.; Grams, F.; Baumann, U.; Reimener, P.; Gomis-Rth, F. X.; McKay, D. B.; Bode, W. Protein Sci. 1995, 4, 823-840.
2. Stamenkovic, I. J. Pathol. 2003, 200, 448-464.
3. Mott, J. D.; Werb, Z. Curr. Opin. Cell Biol. 2004, 16, 558-564.
4. Demerits, I. K.; Brusselle, G. G.; Bracke, K. R.; Vermaelen, K. Y.; Pauwels, R. A. Curr. Opin. Pharmacol. 2005, 5, 257-263.
5. Tchetverikov, I.; Ronday, H. K.; Van El, B.; Kiers, G. H.; Verzijl, N.; TeKoppele, J. M.; Huizinga, T. W.; DeGroot, J.; Hanemaaijer, R. Ann. Rheum. Dis. 2004, 63, 881-883.
6. Polette, M.; Nawrocki-Raby, B.; Gilles, C.; Clavel, C.; Birembaut, P. Crit. Rev. Oncol./Hematol. 2004, 49, 179-186.
7. Ala-aho, R.; Khri, V. M. Biochimie 2005, 87, 273-286.
8. Nagase, H.; Woessner, J. F. J. Biol. Chem. 1999, 274, 21491-21494.
9. Campbell, D. A.; Szardenings, A. K. Curr. Opin. Chem. Biol. 2003, 7, 296-303.
10. Saghatelian, A.; Jessani, N.; Joseph, A.; Humphrey, M.; Cravatt, B. F. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 10000-10005.
11. Szardenings, K.; Li, B.; Ma, L.; Wu, M. Drug Discov. Today Technol. 2004, 1, 9-15.
12. Freije, J. R.; Bischoff, R. J. Chromatogr. A 2003, 1009, 156-169.
13. Parkar, A. A.; Stow, M. D.; Smith, K.; Panicker, A. K.; Guilloteau, J. P.; Jupp, R.; Crowe, S. J. Protein Expr. Purif. 2000, 20, 152-161.
14. Shipley, J. M.; Doyle, G. A. R.; Fliszar, C. J.; Ye, Q. Z.; Johnson, L. L.; Shapiro, S. D.; Welgus, H. G.; Senior, R. M. J. Biol. Chem. 1996, 271, 4335-4341.
15. Burrage, P. S.; Mix, K. S.; Brinckerhof, C. E. Front. Biosci. 2006, 11, 529-543.
16. Rannou, F.; Francois, M.; Corvol, M. T.; Berenbaum, F. Joint Bone Spine, 2006, 73, 29-36.
17. Glasson, S. S.; Askew, R.; Sheppard, B.; Carito, B.; Blanchet, T.; Ma, H. L.; Flannery, C. R.; Peluso, D.; Kanki, K.; Yang, Z.; Majumdar, M. K.; Morris, E. A. Nature 2005, 434, 644-648.
18. Makowski, G. S.; Ramsby, M. L. Clin. Chim. Acta 2003, 329, 77-81.
19. Sinz, A.; Bantscheff, M.; Mikkat, S.; Ringel, B.; Drynda, S.; Kekow, J.; Thiessen, H. J.; Glocker, M. O. Electrophoresis 2002, 23, 3445-3456.
20. Yoshihara, Y.; Nakamura, H.; Obata, K.; Yamada, H.; Hayakawa, T.; Fujikawa, K.; Okada, Y. Ann. Rheum. Dis. 2000, 59, 455-461.
21. Hooper, N. M.; Karran, E. H.; Turner, A. J. Biochem. J. 1897, 327, 265-279.
22. Arribas, J.; Goodly, L.; Vollmer, P.; Kishimoto, T. K.; Rose-John, S.; Massague, J. J. Biol. Chem. 1886, 271, 11376-11382.
23. Fiorucci, S.; Antonelli, E.; Migliorati, G.; Santucci, L.; Morelli, O.; Federici, B.; Morelli, A. Aliment. Pharmacol. Ther. 1888, 12, 1139-1153.
24. Beckett, R. P.; Davidson, A. H.; Drummond, A. H.; Huxley, P.; Whittaker, M. Drug Discov. Today 1996, 1, 16-26.
25. Schechter, I.; Berger, A. Biochem. Biophys. Res. Comm. 1967, 27, 157-162.
26. Jenssen, K.; Sewald, K.; Sewald, N. Bioconjugate Chem. 2004, 15, 594-600.
27. Ratjen, F.; Hartog, C. M.; Paul, K.; Wermelt, J.; Braun, J. Thorax 2002, 57, 930-934.
28. Demedts, I. K.; Morel-Montero, A.; Lebecque, S.; Pacheco, Y.; Cataldo, D.; Joos, G. F.; Pauwels, R. A.; Brusselle, G. G. Thorax, on-line publication on November 24 2005 doi: 10.1136/thx.2005.042432.
29. Uchida, T.; Fukawa, A.; Uchida, M.; Fujita, K.; Saito, K. J. Proteome Res. 2002, 1, 495-499.
30. Wissing, J.; Godl, K.; Brehmer, D.; Blencke, S.; Weber, M.; Habenberger, P.; Stein-Gerlach, M.; Missio, A.; Cotten, M.; Muller, S.; Daub, H. Mol. Cell. Proteomics 2004, 3, 1181-1193.
31. Lolli, G.; Thaler, F.; Valsasina, B.; Roletto, F.; Knapp, S.; Uggeri, M.; Bachi, A.; Matafora, V.; Storici, P.; Stewart, A.; Kalisz, H. M.; Isacchi, A. Proteomics 2003, 3, 1287-1298.
32. Guo, L.; Eisenman, J. R.; Mahimkar, R. M.; Peschon, J. J.; Paxton, R. J.; Black, R. A.; Johnson, R. S. Mol. Cell. Proteomics 2002, 1, 30-36.
33. Qiu, R.; Regnier, F. E. Anal. Chem. 2005, 77, 2802-2809.