Inhibitor affinity chromatography: Profiling the specific reactivity of the proteome with immobilized molecules

Proteomics

Volumn 3, Issue 7, 2003, Pages 1287-1298

  Lolli, Graziano ^a   Thaler, Florian ^a   Valsasina, Barbara ^a   Roletto, Fulvia ^a   Knapp, Stefan ^a   Uggeri, Mauro ^a   Bachi, Angela ^b   Matafora, Vittoria ^b   Storici, Paola ^a   Stewart, Albert ^a,d   Kalisz, Henryk M ^a   Isacchi, Antonella ^a,c  

^a Discovery Research Oncology   (Italy)

^b SAN RAFFAELE HOSPITAL   (Italy)

^c PFIZER INC   (United States)

^d SUGEN INC   (United States)

Author keywords

Affinity chromatography; Cyclin dependent kinase; Functional proteomics; Immobilized inhibitor

Indexed keywords

CYCLIN DEPENDENT KINASE 2; CYCLIN DEPENDENT KINASE INHIBITOR; HEAT SHOCK PROTEIN 27; HEAT SHOCK PROTEIN 70; POLYMERIC RESIN; PROTEOME; RESIN; UNCLASSIFIED DRUG;

ACINAR CELL; AFFINITY CHROMATOGRAPHY; AMINO ACID SEQUENCE; BINDING AFFINITY; CALORIMETRY; CANCER CELL CULTURE; CELL LYSATE; CONFERENCE PAPER; CONTROLLED STUDY; HUMAN; HUMAN CELL; INHIBITOR AFFINITY CHROMATOGRAPHY; ISOTHERMAL CALORIMETRY; MASS SPECTROMETRY; MOLECULAR INTERACTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN EXPRESSION; PROTEIN PROTEIN INTERACTION; TWO DIMENSIONAL ELECTROPHORESIS; VALIDATION PROCESS;

ANIMALS; BLOTTING, WESTERN; CALORIMETRY; CDC2-CDC28 KINASES; CELL LINE; CELL LINE, TUMOR; CHROMATOGRAPHY; CYCLIN A; CYCLIN-DEPENDENT KINASE 2; DOSE-RESPONSE RELATIONSHIP, DRUG; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; HEAT-SHOCK PROTEINS; HSP70 HEAT-SHOCK PROTEINS; HUMANS; INSECTS; LIGANDS; MASS SPECTROMETRY; MODELS, CHEMICAL; NEOPLASM PROTEINS; POLYMERS; PROTEIN BINDING; PROTEOME; RATS; SPECTROMETRY, FLUORESCENCE; THERMODYNAMICS; TRYPSIN;

EID: 12444264868     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/pmic.200300431     Document Type: Conference Paper

References (40)

1. Schena, M., Heller, R. A., Theriault, T. P., Konrad, K. et al., Trends Biotechnol. 1998, 16, 301-306.
2. Johnston, M., Curr. Biol. 1998, 8, R171-R174.
3. Anderson, L., Seilhamer, J., Electrophoresis 1997, 18, 533-537.
4. Gygi, S. P., Rochon, Y., Franz, B. R., Aebersold, R., Mol. Cell. Biol. 1999, 19, 1720-1730.
5. Harry, J. L., Wilkins, M. R., Herbert, B. R., Packer, N. H. et al., Electrophoresis 2000, 21, 1071-1081.
6. Gygi, S. P., Corthals, G. L., Zhang, Y., Rochon, Y., Aebersold, R., Proc. Natl. Acad. Sci. USA 2000, 97, 9390-9395.
7. Liu, Y., Patricelli, M. P., Cravatt, B. F., Proc. Natl. Acad. Sci. USA 1999, 96, 14694-14699.
8. Greenbaum, D., Medzihradszky, K. F., Burlingame, A., Bogyo, M., Chem. Biol. 2000, 7, 569-581.
9. Adam, G. C., Cravatt, B. F., Sorensen, E. J., Chem. Biol. 2001, 8, 81-95.
10. Klinz, F. J., Eur. J. Biochem. 1994, 225, 99-105.
11. Schnier, J. B., Kaur, G., Kaiser, A., Stinson, S. F. et al., FEBS Letters 1999, 454, 100-104.
12. Knockaert, M., Gray, N., Damiens, E., Chang, Y. T. et al., Chem. Biol. 2000, 7, 411-422.
13. Kaiser, A., Nishi, K., Gorin, F. A., Walsh, D. A. et al., Arch. Biochem. Biophys. 2001, 386, 179-187.
14. Shapiro, G. I., Harper, J. W., J. Clin. Invest. 1999, 104, 1645-1653.
15. Bradford, M. M., Anal. Biochem 1976, 72, 248-254.
16. Wessel, D., Flügge, U. I., Anal. Biochem. 1984, 138, 141-143.
17. Laemmli, U. K., Nature 1970, 227, 680-685.
18. Towbin, H., Staehelin, T., Gordon, J., Proc. Natl. Acad. Sci. USA 1979, 76, 4350-4354.
19. Shevchenko, A., Wilm, M., Vorm, O., Mann, M., Anal. Chem. 1996, 68, 850-858.
20. Zhang, W., Chait, B. T., Anal. Chem. 2000, 72, 2482-2489.
21. Wilm, M., Shevchenko, A., Houthaeve, T., Breit, S. et al., Nature 1996, 379, 466-469.
22. Theyssen, H., Schuster, H. P., Packschies, L., Bukau, B., Reinstein, J., J. Mol. Biol. 1996, 263, 657-670.
23. Bermingham, A., Bottomley, J. R., Primrose, W. U., Derrick, J. P., J. Biol. Chem. 2000, 275, 17962-17967.
24. Lu, K., Shih, C., Teicher, B. A., Cancer Chemother Pharmacol. 2000, 46, 293-304.
25. Mishina, T., Dosaka-Akita, H., Hommura, F., Nishi, M. et al., Clin. Cancer Res. 2000, 6, 11-16.
26. Catzavelos, C., Tsao, M. S., DeBoer, G., Bhattacharya, N. et al., Cancer Res. 1999, 59, 684-688.
27. Garrett, M. D., Fattaey, A., Curr. Opin. Genet. Dev. 1999, 9, 104-111.
28. Hung, D. T., Jamison, T. F., Schreiber, S. L., Chem. Biol. 1996, 3, 623-639.
29. Cohen, P., Curr. Opin. Chem. Biol. 1999, 3, 459-465.
30. Crews, C. M., Mohan, R., Curr. Opin. Chem. Biol. 2000, 4, 47-53.
31. Knockaert, M., Greengard, P., Meijer, L., Trends Pharmacol. Sci. 2002, 23, 417-425.
32. Bridges, A. J., Chem. Rev. 2001, 101, 2541-2572.
33. Huse, M., Kuriyan, J., Cell 2002, 109, 275-282.
34. Sausville, E. A., Trends Mol. Med. 2002, 8, 32-37.
35. Knockaert, M., Wieking, K., Schmitt, S., Leost, M. et al., J. Biol. Chem. 2002, 277, 25493-25501.
36. Gurbuxani, S., Ravagnan, L., Kroemer, G., Biochem. Biophys. Res. Commun. 2001, 286, 433-442.
37. Supino-Rosin, L., Yoshimura, A., Yarden, Y., Elazar, Z., Neumann, D. J., Biol. Chem. 2000, 275, 21850-21855.
38. Hamel, E., Vaughns, J., Getahun, Z., Johnson, R., Lin, C. M., Arch. Biochem. Biophys. 1995, 322, 486-499.
39. He, L., Liu, J., Collins, I. Sanford, S. et al., EMBO J. 2000, 19, 1034-1044.
40. Dai, R. M., Li, C. H., Nat. Cell Biol. 2001, 3, 740-744.