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Volumn 8, Issue 11, 2002, Pages 1416-1427

The C-terminal amino acid sequence of nascent peptide is a major determinant of SsrA tagging at all three stop codons

Author keywords

Nascent peptide; Stop codon; TmRNA; Trans translation; Translation readthrough

Indexed keywords

MESSENGER RNA;

EID: 0036850399     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1355838202020198     Document Type: Article
Times cited : (46)

References (38)
  • 1
    • 0030433928 scopus 로고    scopus 로고
    • Differential contributions of two elements of rho-independent terminator to transcription termination and mRNA stabilization
    • Abe H, Aiba H. 1996. Differential contributions of two elements of rho-independent terminator to transcription termination and mRNA stabilization. Biochimie 78:1035-1042.
    • (1996) Biochimie , vol.78 , pp. 1035-1042
    • Abe, H.1    Aiba, H.2
  • 2
    • 0343627965 scopus 로고    scopus 로고
    • SsrA-mediated tagging and proteolysis of Lacl and its role in the regulation of lac operon
    • Abo T, Inada T, Ogawa K, Aiba H. 2000. SsrA-mediated tagging and proteolysis of Lacl and its role in the regulation of lac operon. EMBO J 19:3762-3769.
    • (2000) EMBO J , vol.19 , pp. 3762-3769
    • Abo, T.1    Inada, T.2    Ogawa, K.3    Aiba, H.4
  • 3
    • 0035985042 scopus 로고    scopus 로고
    • SsrA-mediated protein tagging in the presence of miscoding drugs and its physiological role in Escherichia coli
    • Abo T, Ueda K, Sunohara T, Ogawa K, Aiba H. 2002. SsrA-mediated protein tagging in the presence of miscoding drugs and its physiological role in Escherichia coli. Genes Cells 7:629-638.
    • (2002) Genes Cells , vol.7 , pp. 629-638
    • Abo, T.1    Ueda, K.2    Sunohara, T.3    Ogawa, K.4    Aiba, H.5
  • 4
    • 0020490340 scopus 로고
    • Molecular cloning and nucleotide sequencing of the gene for E. coli cAMP receptor protein
    • Aiba H, Fujimoto S, Ozaki N. 1982. Molecular cloning and nucleotide sequencing of the gene for E. coli cAMP receptor protein. Nucleic Acids Res 10:1345-1361.
    • (1982) Nucleic Acids Res , vol.10 , pp. 1345-1361
    • Aiba, H.1    Fujimoto, S.2    Ozaki, N.3
  • 5
    • 0034637111 scopus 로고    scopus 로고
    • The complete atomic structure of the large ribosomal subunit at 2.4 A resolution
    • Ban N, Nissen P, Hansen J, Moore PB, Steitz TA. 2000. The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. Science 289:905-920.
    • (2000) Science , vol.289 , pp. 905-920
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Moore, P.B.4    Steitz, T.A.5
  • 6
    • 0029923751 scopus 로고    scopus 로고
    • Structure of the C-terminal end of the nascent peptide influences translation termination
    • Bjornsson A, Mottagui-Tabar S, Isaksson LA. 1996. Structure of the C-terminal end of the nascent peptide influences translation termination. EMBO J 15:1696-1704.
    • (1996) EMBO J , vol.15 , pp. 1696-1704
    • Bjornsson, A.1    Mottagui-Tabar, S.2    Isaksson, L.A.3
  • 7
    • 0036364355 scopus 로고    scopus 로고
    • Competition between SsrA tagging and translational termination at weak stop codons in Escherichia coli
    • Collier J, Binet E, Bouloc P. 2002. Competition between SsrA tagging and translational termination at weak stop codons in Escherichia coli. Mol Microbiol 45:745-754.
    • (2002) Mol Microbiol , vol.45 , pp. 745-754
    • Collier, J.1    Binet, E.2    Bouloc, P.3
  • 8
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko KA, Wanner BL. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 97:6640-6645.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 9
    • 0035674317 scopus 로고    scopus 로고
    • Increased sensitivity to protein synthesis inhibitors in cells lacking tmRNA
    • De La Cruz J, Vioque A. 2001. Increased sensitivity to protein synthesis inhibitors in cells lacking tmRNA. RNA 7:1708-1716.
    • (2001) RNA , vol.7 , pp. 1708-1716
    • De La Cruz, J.1    Vioque, A.2
  • 11
    • 0035171382 scopus 로고    scopus 로고
    • Emerging views on tmRNA-mediated protein tagging and ribosome rescue
    • Gillet R, Felden B. 2001. Emerging views on tmRNA-mediated protein tagging and ribosome rescue. Mol Microbiol 42:879-885.
    • (2001) Mol Microbiol , vol.42 , pp. 879-885
    • Gillet, R.1    Felden, B.2
  • 12
    • 0032079329 scopus 로고    scopus 로고
    • The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system
    • Gottesman S, Roche E, Zhou Y, Sauer, RT. 1998. The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system. Genes Dev 12:1338-1347.
    • (1998) Genes Dev , vol.12 , pp. 1338-1347
    • Gottesman, S.1    Roche, E.2    Zhou, Y.3    Sauer, R.T.4
  • 13
    • 0037133638 scopus 로고    scopus 로고
    • Stop codons preceded by rare arginine codons are efficient determinants of SsrAtagging in Escherichia coli
    • Hayes CS, Bose B, Sauer RT. 2002a. Stop codons preceded by rare arginine codons are efficient determinants of SsrAtagging in Escherichia coli. Proc Natl Acad Sci USA 99:3440-3445.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 3440-3445
    • Hayes, C.S.1    Bose, B.2    Sauer, R.T.3
  • 14
    • 0037072794 scopus 로고    scopus 로고
    • Proline residues at the C-terminus of nascent chains induce SsrA-tagging during translation termination
    • Hayes CS, Bose B, Sauer RT. 2002b. Proline residues at the C-terminus of nascent chains induce SsrA-tagging during translation termination. J Biol Chem 277:33825-33832.
    • (2002) J Biol Chem , vol.277 , pp. 33825-33832
    • Hayes, C.S.1    Bose, B.2    Sauer, R.T.3
  • 15
    • 2642666491 scopus 로고    scopus 로고
    • Degradation of carboxy-terminal-tagged cytoplasmic proteins by the Escherichia coli protease HflB (FtsH)
    • Herman C, Thevenet D, Bouloc P, Walker GC, D'Ari R. 1998. Degradation of carboxy-terminal-tagged cytoplasmic proteins by the Escherichia coli protease HflB (FtsH). Genes Dev 12:1348-1355.
    • (1998) Genes Dev , vol.12 , pp. 1348-1355
    • Herman, C.1    Thevenet, D.2    Bouloc, P.3    Walker, G.C.4    D'Ari, R.5
  • 16
    • 0027376662 scopus 로고
    • A lowered concentration of cAMP receptor protein caused by glucose is an important determinant for catabolite repression in Escherichia coli
    • Ishizuka H, Hanamura A, Kunimura T, Aiba H. 1993. A lowered concentration of cAMP receptor protein caused by glucose is an important determinant for catabolite repression in Escherichia coli. Mol Microbiol 10:341-350.
    • (1993) Mol Microbiol , vol.10 , pp. 341-350
    • Ishizuka, H.1    Hanamura, A.2    Kunimura, T.3    Aiba, H.4
  • 17
    • 0034046020 scopus 로고    scopus 로고
    • The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue
    • Karzai AW, Roche ED, Sauer RT. 2000. The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue. Nat Struct Biol 7:449-455.
    • (2000) Nat Struct Biol , vol.7 , pp. 449-455
    • Karzai, A.W.1    Roche, E.D.2    Sauer, R.T.3
  • 18
    • 0030024281 scopus 로고    scopus 로고
    • Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA
    • Keiler KC, Waller PR, Sauer RT. 1996. Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA. Science 271:990-993.
    • (1996) Science , vol.271 , pp. 990-993
    • Keiler, K.C.1    Waller, P.R.2    Sauer, R.T.3
  • 19
    • 0031056726 scopus 로고    scopus 로고
    • Regulation of the Escherichia coli tna operon: Nascent leader peptide control at the tnaC stop codon
    • Konan KV, Yanofsky C. 1997. Regulation of the Escherichia coli tna operon: Nascent leader peptide control at the tnaC stop codon. J Bacteriol 179:1774-1779.
    • (1997) J Bacteriol , vol.179 , pp. 1774-1779
    • Konan, K.V.1    Yanofsky, C.2
  • 20
    • 0033024156 scopus 로고    scopus 로고
    • Role of ribosome release in regulation of tna operon expression in Escherichia coli
    • Konan KV, Yanofsky C. 1999. Role of ribosome release in regulation of tna operon expression in Escherichia coli. J Bacteriol 181:1530-1536.
    • (1999) J Bacteriol , vol.181 , pp. 1530-1536
    • Konan, K.V.1    Yanofsky, C.2
  • 21
    • 0035137303 scopus 로고    scopus 로고
    • A tripeptide sequence within the nascent DaaP protein is required for mRNA processing of a fimbrial operon in Escherichia coli
    • Loomis WP, Koo JT, Cheung TP, Moseley SL. 2001. A tripeptide sequence within the nascent DaaP protein is required for mRNA processing of a fimbrial operon in Escherichia coli. Mol Microbiol 39:693-707.
    • (2001) Mol Microbiol , vol.39 , pp. 693-707
    • Loomis, W.P.1    Koo, J.T.2    Cheung, T.P.3    Moseley, S.L.4
  • 22
    • 0029982204 scopus 로고    scopus 로고
    • Ribosome regulation by the nascent peptide
    • Lovett PS, Rogers EJ. 1996. Ribosome regulation by the nascent peptide. Microbiol Rev 60:366-385.
    • (1996) Microbiol Rev , vol.60 , pp. 366-385
    • Lovett, P.S.1    Rogers, E.J.2
  • 24
    • 0028175762 scopus 로고
    • The second to last amino acid in the nascent peptide as a codon context determinant
    • Mottagui-Tabar S, Bjornsson A, Isaksson LA. 1994. The second to last amino acid in the nascent peptide as a codon context determinant. EMBO J 13:249-257.
    • (1994) EMBO J , vol.13 , pp. 249-257
    • Mottagui-Tabar, S.1    Bjornsson, A.2    Isaksson, L.A.3
  • 25
    • 0030828410 scopus 로고    scopus 로고
    • Only the last amino acids in the nascent peptide influence translation termination in Escherichia coli genes
    • Mottagui-Tabar S, Isaksson LA. 1997. Only the last amino acids in the nascent peptide influence translation termination in Escherichia coli genes. FEBS Lett 414:165-170.
    • (1997) FEBS Lett , vol.414 , pp. 165-170
    • Mottagui-Tabar, S.1    Isaksson, L.A.2
  • 26
    • 0033873650 scopus 로고    scopus 로고
    • Requirement of transfer-messenger RNA for the growth of Bacillus subtilis under stresses
    • Muto A, Fujihara A, Ito KI, Matsuno J, Ushida C, Himeno H. 2000. Requirement of transfer-messenger RNA for the growth of Bacillus subtilis under stresses. Genes Cells 5:627-635.
    • (2000) Genes Cells , vol.5 , pp. 627-635
    • Muto, A.1    Fujihara, A.2    Ito, K.I.3    Matsuno, J.4    Ushida, C.5    Himeno, H.6
  • 27
    • 0030592511 scopus 로고    scopus 로고
    • Emerging understanding of translation termination
    • Nakamura Y, Ito K, Isaksson LA. 1996. Emerging understanding of translation termination. Cell 87:147-150.
    • (1996) Cell , vol.87 , pp. 147-150
    • Nakamura, Y.1    Ito, K.2    Isaksson, L.A.3
  • 28
    • 0035105116 scopus 로고    scopus 로고
    • Secretion monitor, SecM, undergoes self -translation arrest in the cytosol
    • Nakatogawa H, Ito K. 2001. Secretion monitor, SecM, undergoes self -translation arrest in the cytosol. Mol Cell 7:185-192.
    • (2001) Mol Cell , vol.7 , pp. 185-192
    • Nakatogawa, H.1    Ito, K.2
  • 29
    • 0037040411 scopus 로고    scopus 로고
    • The ribosomal exit tunnel functions as a discriminating gate
    • Nakatogawa H, Ito K. 2002. The ribosomal exit tunnel functions as a discriminating gate. Cell 108:629-636.
    • (2002) Cell , vol.108 , pp. 629-636
    • Nakatogawa, H.1    Ito, K.2
  • 30
    • 0034637161 scopus 로고    scopus 로고
    • The structural basis of ribosome activity in peptide bond synthesis
    • Nissen P, Hansen J, Ban N, Moore PB, Steitz TA. 2000. The structural basis of ribosome activity in peptide bond synthesis. Science 289:920-930.
    • (2000) Science , vol.289 , pp. 920-930
    • Nissen, P.1    Hansen, J.2    Ban, N.3    Moore, P.B.4    Steitz, T.A.5
  • 31
    • 0028821311 scopus 로고
    • The identity of the base following the stop codon determines the efficiency of in vivo translational termination in Escherichia coli
    • Poole ES, Brown CM, Tate WP. 1995. The identity of the base following the stop codon determines the efficiency of in vivo translational termination in Escherichia coli. EMBO J 14:151-158.
    • (1995) EMBO J , vol.14 , pp. 151-158
    • Poole, E.S.1    Brown, C.M.2    Tate, W.P.3
  • 32
    • 0035964319 scopus 로고    scopus 로고
    • The tRNA function of SsrA contributes to controlling repression of bacteriophage Mu prophage
    • Ranquet C, Geiselmann J, Toussaint A. 2001. The tRNA function of SsrA contributes to controlling repression of bacteriophage Mu prophage. Proc Natl Acad Sci USA 98:10220-10225.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 10220-10225
    • Ranquet, C.1    Geiselmann, J.2    Toussaint, A.3
  • 33
    • 0033575660 scopus 로고    scopus 로고
    • SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity
    • Roche ED, Sauer RT. 1999. SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity. EMBO J 18:4579-4589.
    • (1999) EMBO J , vol.18 , pp. 4579-4589
    • Roche, E.D.1    Sauer, R.T.2
  • 34
    • 0035958905 scopus 로고    scopus 로고
    • Identification of endogenous SsrAtagged proteins reveals tagging at positions corresponding to stop codons
    • Roche ED, Sauer RT. 2001. Identification of endogenous SsrAtagged proteins reveals tagging at positions corresponding to stop codons. J Biol Chem 276:28509-28515.
    • (2001) J Biol Chem , vol.276 , pp. 28509-28515
    • Roche, E.D.1    Sauer, R.T.2
  • 35
    • 0029773416 scopus 로고    scopus 로고
    • Three, four or more: The translational stop signal at length
    • Tate WP, Mannering SA. 1996. Three, four or more: The translational stop signal at length. Mol Microbiol 21:213-219.
    • (1996) Mol Microbiol , vol.21 , pp. 213-219
    • Tate, W.P.1    Mannering, S.A.2
  • 36
    • 0037040406 scopus 로고    scopus 로고
    • Regulatory nascent peptides in the ribosomal tunnel
    • Tenson T, Ehrenberg M. 2002. Regulatory nascent peptides in the ribosomal tunnel. Cell 108:591-594.
    • (2002) Cell , vol.108 , pp. 591-594
    • Tenson, T.1    Ehrenberg, M.2
  • 37
    • 0036112210 scopus 로고    scopus 로고
    • Bacterial SsrA system plays a role in coping with unwanted translational readthrough caused by suppressor tRNAs
    • Ueda K, Yamamoto Y, Ogawa K, Abo T, Inokuchi H, Aiba H. 2002. Bacterial SsrA system plays a role in coping with unwanted translational readthrough caused by suppressor tRNAs. Genes Cells 7:509-519.
    • (2002) Genes Cells , vol.7 , pp. 509-519
    • Ueda, K.1    Yamamoto, Y.2    Ogawa, K.3    Abo, T.4    Inokuchi, H.5    Aiba, H.6
  • 38
    • 0036221089 scopus 로고    scopus 로고
    • The biological roles of trans-translation
    • Withey JH, Friedman DI. 2002. The biological roles of trans-translation. Curr Opin Microbiol 5:154-159.
    • (2002) Curr Opin Microbiol , vol.5 , pp. 154-159
    • Withey, J.H.1    Friedman, D.I.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.