Kinetic isotope effect of the L-phenylalanine oxidase from Pseudomonas sp. P-501

Journal of Biochemistry

Volumn 139, Issue 3, 2006, Pages 551-555

  Ohta, Yui ^a   Mukouyama, Etsuko B ^a   Suzuki, Haruo ^a  

^a KITASATO UNIVERSITY   (Japan)

Author keywords

Flavoprotein; H tunneling; Kinetic isotope effect; Reductive half reaction; Stopped flow

Indexed keywords

FLAVINE ADENINE NUCLEOTIDE; FLAVOPROTEIN; GLYCEROL; METHIONINE; OXIDOREDUCTASE; PHENYLALANINE; PHENYLALANINEOXIDASE; UNCLASSIFIED DRUG;

ARTICLE; CATALYSIS; DECARBOXYLATION; ENZYME ACTIVATION; ENZYME ACTIVITY; ENZYME KINETICS; ENZYME SUBSTRATE; ISOTOPE ANALYSIS; NONHUMAN; OXIDATION KINETICS; PSEUDOMONAS; SPECTROPHOTOMETRY; TEMPERATURE DEPENDENCE;

AMINO ACID OXIDOREDUCTASES; CATALYSIS; DEUTERIUM; FLAVOPROTEINS; ISOTOPES; KINETICS; MODELS, CHEMICAL; PSEUDOMONAS;

PSEUDOMONAS; PSEUDOMONAS SP.;

EID: 33646371735     PISSN: 0021924X     EISSN: None     Source Type: Journal    
DOI: 10.1093/jb/mvj049     Document Type: Article

References (30)

1. Koyama, H. (1982) Purification and characterization of a novel L-phenylalanine oxidase (deaminating and decarboxylating) from Pseudomonas sp. P-501. J. Biochem. 92, 1235-1240
2. Koyama, H. (1983) Further characterization of a novel L-phenylalanine oxidase (deaminating and decarboxylating) from Pseudomonas sp. P-501. J. Biochem. 93, 1313-1319
3. Koyama, H. (1984) Oxidation and oxygenation of L-amino acids catalyzed by a L-phenylalanine oxidase (deaminating and decarboxylating) from Pseudomonas sp. P-501. J. Biochem. 96, 421-427
4. Suzuki, H., Higashi, Y., Asano, M., Suguro, M., Kigawa, M., Maeda, M., Katayama, S., Mukouyama, E.B., and Uchiyama, K. (2004) Sequencing and expression of the L-phenylalanine oxidase gene from Pseudomonas sp. P-501. Proteolytic activation of the proenzyme. J. Biochem. 136, 617-627.
5. Mukouyama, E.B., Suzuki, H., and Koyama, H. (1994) New subunit in L-phenylalanine oxidase from Pseudomonas sp. P-501. Arch. Biochem. Biophys. 308, 400-406
6. Koyama, H. and Suzuki, H. (1986) Spectral and kinetic studies on Pseudomonas L-phenylalanine oxidase (deaminating and decarboxylating). J. Biochem. 100, 859-866
7. Nakamura, T., Nakamura, S., and Ogura, Y. (1963) Semiquinone and enzyme kinetics of D-amino acid oxidase. J. Biochem. 54, 512-519
8. Kumagai, H., Yamada, H., Suzuki, H., and Ogura, Y. (1971) Action mechanism of tyramine oxidase from Sarcina lutea. J. Biochem. 69, 137-144
9. Suzuki, H., Koyama, H., Nishina, Y., Sato, K., and Shiga, K. (1991) A resonance Raman study on a reaction intermediate of Pseudomonas L-phenylalanine oxidase (deaminating and decarboxylating). J. Biochem. 110, 169-172
10. Nishina, Y., Shiga, K., Watari, H., Miura, R., Miyake, Y., Tojo, H., and Yamano, T. (1982) Resonance Raman study of the purple intermediates of the flavoenzyme D-amino acid oxidase. Biochem. Biophys. Res. Commun. 106, 818-822
11. Miura, R., Nishina, Y., Ohta, M., Tojo, H., Shiga, K., Watari, H., Yamano, T., and Miyake, Y. (1983) Resonance Raman study of the flavin in the purple intermediates of D-amino acid oxidase Biochem. Biophys. Res. Commun. 111, 588-594
12. Nishina, Y., Shiga, K., Miura, R., Tojo, H., Ohta, M., Miyake, Y., Yamano, T., and Watari, H. (1983) On the structures of flavoprotein D-amino acid oxidase purple intermediates. A resonance Raman study. J. Biochem. 94, 1979-1990
13. Ohnishi, T., Yamamoto, S., Hayaishi, O., Izumi, T., and Shiba, T. (1976) Studies on the reaction specificity of the flavoprotein lysine monooxygenase with modified substrates. Arch. Biochem. Biophys. 176, 358-365
14. Cha, Y., Murray, C.J., and Klinman, J.P. (1989) Hydrogen tunneling in enzyme reactions. Science 243, 1325-1330
15. Liang, Z.-X. and Klinman, J.P. (2004) Structural bases of hydrogen tunneling in enzymes: progress and puzzles. Curr. Opin. Struc. Biol. 14, 648-655
16. Jonsson T., Edmondson D.E., Klinman J.P. (1994) Hydrogen tunneling in the flavoenzyme monoamine oxidase B. Biochemistry 33, 14871-14878
17. Kohen, A., Jonsson, T., and Klinman, J.P. (1997) Effect of protein glycosylation on catalysis: changes in hydrogen tunneling and enthalpy of activation in the glucose oxidase reaction. Biochemistry 36, 2603-2611
18. Harris, R.J., Meskys, R., Sutcliffe, M.J., and Scrutton, N.S. (2000) Kinetic studies of the mechanism of carbon-hydrogen bond breakage by the heterotetrameric sarcosine oxidase of Arthrobacter sp. 1-1N. Biochemistry 39, 1189-1198
19. Basran, J., Sutcliffe, M.J., and Scrutton, N.S. (2001) Deuterium isotope effects during carbon-hydrogen bond cleavage by trimethylamine dehydrogenase. J. Biol. Chem. 276, 24581-24587
20. Basran, J., Harris, R.J., Sutcliffe, M.J., and Scrutton, N.S. (2003) H-tunneling in the multiple H-transfers of the catalytic cycle of morphinone reductase and in the reductive half-reaction of the homologous pentaerythritol tetranitrate reductase. J. Biol. Chem. 278, 43973-43982
21. Laemmli, U.K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685
22. Tonomura, B., Nakatani, H., Ohnishi, M., Yamaguchi-Ito, J., and Hitomi, K. (1978) Test reactions for a stopped-flow apparatus. Reduction of 2,6-dichloro- phenolindophenol and potassium ferricyanide by L-ascorbic acid. Anal. Biochem. 84, 370-383
23. Jonsson, T., Glickman, M.H., Sun, S., and Klinman, J.P. (1996) Experimental evidence for extensive tunneling of hydrogen in the lipoxygenase reaction: Implications for enzyme catalysis. J. Am. Chem. Soc. 118, 10319-10320
24. Bruno, W.J. and Bialek, W. (1992) Vibrationally enhanced tunneling as a mechanism for enzymatic hydrogen transfer. Biophys. J. 63, 689-699
25. Cornish-Bowden, A. (1976) Principles of Enzyme Kinetics, pp. 173-177, Butterworths, London-Boston
26. Basran, J., Sutcliffe, M.J., and Scrutton, N.S. (1999) Enzymatic H-transfer requires vibration-driven extreme tunneling. Biochemistry 38, 3218-3222
27. Ansari, A., Jones, C.M., Henry, E.R., Hofrichter, J., and Eaton, W.A. (1992) The role of solvent viscosity in the dynamics of protein conformational changes. Science 256, 1796-1798
28. Feng, C., Kedia, R.V., Hazzard, J.T., Hurley, J.K., Tollin, G., and Enemark, J.H. (2002) Effect of solution viscosity on intramolecular electron transfer in sulfite oxidase. Biochemistry 41, 5816-5821
29. Khajehlpour, M., Troxlere, T., and Vanderkooi, J.M. (2003) Effect of protein dynamics upon reactions that occur in the heme pocket of horseradish peroxidase. Biochemistry 42, 2672-2679
30. Walser, R. and van Gunsteren, W.F. (2001) Viscosity dependence of protein dynamics. Proteins 42, 414-421