Comparative analysis of iron regulated genes in mycobacteria

FEBS Letters

Volumn 580, Issue 11, 2006, Pages 2567-2576

  Yellaboina, Sailu ^a   Ranjan, Sarita ^a   Vindal, Vaibhav ^a   Ranjan, Akash ^a  

^a CENTRE FOR DNA FINGERPRINTING AND DIAGNOSTICS   (India)

Author keywords

Bacteria; Iron; Modules; Mycobacterium; Pathogen; Prediction; Regulon

Indexed keywords

4 HYDROXYBENZOYL COENZYME A HYDROLASE; HYDROLASE; IRON; NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN; PROTEINASE; UNCLASSIFIED DRUG;

ARTICLE; IRON DEPENDENT REGULATOR; MYCOBACTERIUM; MYCOBACTERIUM AVIUM; MYCOBACTERIUM SMEGMATIS; NONHUMAN; OPERON; PARATUBERCULOSIS; PRIORITY JOURNAL; REGULATOR GENE;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BINDING SITES; COMPUTATIONAL BIOLOGY; CONSERVED SEQUENCE; GENE EXPRESSION REGULATION, BACTERIAL; IRON; MOLECULAR SEQUENCE DATA; MYCOBACTERIUM; OPERON; PROTEIN BINDING; REPRESSOR PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID;

CORYNEBACTERINEAE; MYCOBACTERIUM; MYCOBACTERIUM AVIUM; MYCOBACTERIUM AVIUM SUBSP. PARATUBERCULOSIS; MYCOBACTERIUM SMEGMATIS; MYCOBACTERIUM TUBERCULOSIS;

EID: 33646198530     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2006.03.090     Document Type: Article

References (26)

1. Castagnetto J.M., Hennessy S.W., Roberts V.A., Getzoff E.D., Tainer J.A., and Pique M.E. MDB: the Metalloprotein Database and Browser at The Scripps Research Institute. Nucleic Acids Res. 30 (2002) 379-382
2. Ho W.L., Yu R.C., and Chou C.C. Effect of iron limitation on the growth and cytotoxin production of Salmonella choleraesuis SC-5. Int. J. Food Microbiol. 3 (2004) 295-302
3. Martinez A., and Kolter R. Protection of DNA during oxidative stress by the non specific DNA-binding protein Dps. J. Bacteriol. 179 (1997) 5188-5194
4. Smith J.L. The physiological role of ferritin-like compounds in bacteria. Crit. Rev. Microbiol. 30 3 (2004) 173-185
5. Ratledge C. Iron, mycobacteria and tuberculosis. Tuberculosis 84 (2004) 110-130
6. Litwin C.M., and Calderwood S.B. Role of iron in regulation of virulence genes. Clin. Microbiol. Rev. 6 (1993) 137-149 (review)
7. Schmitt M.P., Predich M., Doukhan L., Smith I., and Holmes R.K. Characterization of an iron-dependent regulatory protein (IdeR) of Mycobacterium tuberculosis as a functional homolog of the diphtheria toxin repressor (DtxR) from Corynebacterium diphtheriae. Infect Immun. 11 (1995) 4284-4289
8. Rodriguez G.M., Gold B., Gomez M., Dussurget O., and Smith I. Identification and characterization of two divergently transcribed iron regulated genes in Mycobacterium tuberculosis. Tuber Lung Dis. 5 (1999) 287-298 Erratum in: Tuber Lung Dis. 6, 382
9. Gold B., Rodriguez G.M., Marras S.A., Pentecost M., and Smith I. The Mycobacterium tuberculosis IdeR is a dual functional regulator that controls transcription of genes involved in iron acquisition, iron storage and survival in macrophages. Mol. Microbiol. 3 (2001) 851-865
10. Rodriguez G.M., Voskuil M.I., Gold B., Schoolnik G.K., and Smith I. IdeR, An essential gene in mycobacterium tuberculosis: role of IdeR in iron-dependent gene expression, iron metabolism, and oxidative stress response. Infect Immun. 7 (2002) 3371-3381
11. Yellaboina S., Seshadri J., Kumar M.S., and Ranjan A. PredictRegulon: a webserver for the prediction of the regulatory protein binding sites and operons in prokaryote genomes. Nucleic Acids Res. 32 (2004) W318-W320
12. Yellaboina S., Ranjan S., Chakhaiyar P., Hasnain S.E., and Ranjan A. Prediction of DtxR regulon: identification of binding sites and operons controlled by Diphtheria toxin repressor in Corynebacterium diphtheriae. BMC Microbiol. 4 (2004) 1471-2180
13. Prakash P., Yellaboina S., Ranjan A., and Hasnain S.E. Computational prediction and experimental verification of novel IdeR binding sites in the upstream sequences of Mycobacterium tuberculosis open reading frames. Bioinformatics 21 (2005) 2161-2166
14. Marchler-Bauer A., Anderson J.B., DeWeese-Scott C., Fedorova N.D., Geer L.Y., He S., Hurwitz D.I., Jackson J.D., Jacobs A.R., Lanczycki C.J., Liebert C.A., Liu C., Madej T., Marchler G.H., Mazumder R., Nikolskaya A.N., Panchenko A.R., Rao B.S., Shoemaker B.A., Simonyan V., Song J.S., Thiessen P.A., Vasudevan S., Wang Y., Yamashita R.A., Yin J.J., and Bryant S.H. CDD a curated Entrez database of conserved domain alignments. Nucleic Acids Res. 31 (2003) 383-387
15. Quadri L.E., Sello J., Keating T.A., Weinreb P.H., and Walsh C.T. Identification of a Mycobacterium tuberculosis gene cluster encoding the biosynthetic enzymes for assembly of the virulence-conferring siderophore mycobactin. Chem. Biol. 5 (1998) 631-645
16. Pelludat C., Brem D., and Heesemann J. Irp9, encoded by the high-pathogenicity island of Yersinia enterocolitica, is able to convert chorismate into salicylate, the precursor of the siderophore yersiniabactin. J. Bacteriol. 18 (2003) 5648-5653
17. Begg K.J., Dewar S.J., and Donachie W.D. A new Escherichia coli cell division gene, ftsK. J. Bacteriol. 21 (1995) 6211-6222
18. Daniel R.A., Williams A.M., and Errington J. A complex four-gene operon containing essential cell division gene pbpB in Bacillus subtilis. J. Bacteriol. 8 (1996) 2343-2450
19. Frickey T., and Lupas A.N. Phylogenetic analysis of AAA proteins. J. Struct. Biol. 1-2 (2004) 2-10
20. Hanique S., Colombo M.L., Goormaghtigh E., Soumillion P., Frere J.M., and Joris B. Evidence of an intramolecular interaction between the two domains of the BlaR1 penicillin receptor during the signal transduction. J. Biol. Chem. 14 (2004) 14264-14272
21. Wilke M.S., Hills T.L., Zhang H.Z., Chambers H.F., and Strynadka N.C. Crystal structures of the Apo and penicillin-acylated forms of the BlaR1 β lactam sensor of Staphylococcus aureus. J. Biol. Chem. 45 (2004) 47278-47287
22. Stearman R., Yuan D.S., Yamaguchi-Iwai Y., Klausner R.D., and Dancis A. A permease-oxidase complex involved in high-affinity iron uptake in yeast. Science 271 (1996) 1552-1557
23. Ramanan N., and Wang Y. A high-affinity iron permease essential for Candida albicans virulence. Science 288 (2000) 1062-1064
24. Butterton J.R., and Calderwood S.B. Identification, cloning, and sequencing of a gene required for ferric vibriobactin utilization by Vibrio cholerae. J. Bacteriol. 18 (1994) 5631-5638
25. Agranoff D., Monahan I.M., Mangan J.A., Butcher P.D., and Krishna S. Mycobacterium tuberculosis expresses a novel pH-dependent divalent cation transporter belonging to the Nramp family. J. Exp. Med. 5 (1999) 717-724
26. Domenech P., Reed M.B., and Barry C.E. Contribution of the Mycobacterium tuberculosis MmpL protein family to virulence and drug resistance. Infect Immun. 6 (2005) 3492-34501