-
1
-
-
0023392267
-
A method for gene disruption that allows repeated use of URA3 selection in the construction of multiply disrupted yeast strains
-
ALANI, E., L. CAO and N. KLECKNER, 1987 A method for gene disruption that allows repeated use of URA3 selection in the construction of multiply disrupted yeast strains. Genetics 116: 541-545.
-
(1987)
Genetics
, vol.116
, pp. 541-545
-
-
Alani, E.1
Cao, L.2
Kleckner, N.3
-
2
-
-
3543090451
-
Local definition of Ty1 target preference by long terminal repeats and clustered tRNA genes
-
BACHMAN, N., Y. EBY and J. D. BOEKE, 2004 Local definition of Ty1 target preference by long terminal repeats and clustered tRNA genes. Genome Res. 14: 1232-1247.
-
(2004)
Genome Res.
, vol.14
, pp. 1232-1247
-
-
Bachman, N.1
Eby, Y.2
Boeke, J.D.3
-
3
-
-
17444372794
-
TFIIIB subunit Bdp1p is required for periodic integration of the Ty1 retrotransposon and targeting of Isw2p to S. cerevisiae tDNAs
-
BACHMAN, N., M. E. GELBART, T. TSUKIYAMA and J. D. BOEKE, 2005 TFIIIB subunit Bdp1p is required for periodic integration of the Ty1 retrotransposon and targeting of Isw2p to S. cerevisiae tDNAs. Genes Dev. 19: 955-964.
-
(2005)
Genes Dev.
, vol.19
, pp. 955-964
-
-
Bachman, N.1
Gelbart, M.E.2
Tsukiyama, T.3
Boeke, J.D.4
-
4
-
-
0037318210
-
Transcriptional interactions between yeast tRNA genes, flanking genes and Ty elements: A genomic point of view
-
BOLTON, E. C., and J. D. BOEKE, 2003 Transcriptional interactions between yeast tRNA genes, flanking genes and Ty elements: a genomic point of view. Genome Res. 13: 254-263.
-
(2003)
Genome Res.
, vol.13
, pp. 254-263
-
-
Bolton, E.C.1
Boeke, J.D.2
-
5
-
-
0032579440
-
Designer deletion strains derived from Saccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCR-mediated gene disruption and other applications
-
BRACHMANN, C. B., A. DAVIES, G. J. COST, E. CAPUTO, J. LI et al., 1998 Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast 14: 115-132.
-
(1998)
Yeast
, vol.14
, pp. 115-132
-
-
Brachmann, C.B.1
Davies, A.2
Cost, G.J.3
Caputo, E.4
Li, J.5
-
6
-
-
0142227237
-
Targeting survival: Integration site selection by retroviruses and LTR-retrotransposons
-
BUSHMAN, F. D., 2003 Targeting survival: integration site selection by retroviruses and LTR-retrotransposons. Cell 115: 135-138.
-
(2003)
Cell
, vol.115
, pp. 135-138
-
-
Bushman, F.D.1
-
7
-
-
0026518979
-
Ty3 integrates within the region of RNA polymerase III transcription initiation
-
CHALKER, D. L., and S. B. SANDMEYER, 1992 Ty3 integrates within the region of RNA polymerase III transcription initiation. Genes Dev. 6: 117-128.
-
(1992)
Genes Dev.
, vol.6
, pp. 117-128
-
-
Chalker, D.L.1
Sandmeyer, S.B.2
-
8
-
-
0026082573
-
Single-step selection for Ty1 element retrotransposition
-
USA
-
CURCIO, M. J., and D. J. GARFINKEL, 1991 Single-step selection for Ty1 element retrotransposition. Proc. Natl. Acad. Sci. USA 88: 936-940.
-
(1991)
Proc. Natl. Acad. Sci.
, vol.88
, pp. 936-940
-
-
Curcio, M.J.1
Garfinkel, D.J.2
-
9
-
-
0026636672
-
Posttranslational control of Ty1 retrotransposition occurs at the level of protein processing
-
CURCIO, M. J., and D. J. GARFINKEL, 1992 Posttranslational control of Ty1 retrotransposition occurs at the level of protein processing. Mol. Cell. Biol. 12: 2813-2825.
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 2813-2825
-
-
Curcio, M.J.1
Garfinkel, D.J.2
-
10
-
-
0028222894
-
Heterogeneous functional Ty1 elements are abundant in the Saccharomyces cerevisiae genome
-
CURCIO, M. J., and D. J. GARFINKEL, 1994 Heterogeneous functional Ty1 elements are abundant in the Saccharomyces cerevisiae genome. Genetics 136: 1245-1259.
-
(1994)
Genetics
, vol.136
, pp. 1245-1259
-
-
Curcio, M.J.1
Garfinkel, D.J.2
-
11
-
-
0029879536
-
Integration of the yeast retrotransposon Ty1 is targeted to regions upstream of genes transcribed by RNA polymerase III
-
DEVINE, S. E., and J. D. BOEKE, 1996 Integration of the yeast retrotransposon Ty1 is targeted to regions upstream of genes transcribed by RNA polymerase III. Genes Dev. 10: 620-633.
-
(1996)
Genes Dev.
, vol.10
, pp. 620-633
-
-
Devine, S.E.1
Boeke, J.D.2
-
12
-
-
0021250005
-
Preferential integration of yeast transposable element Ty into a promoter region
-
EIBEL, H., and P. PHILIPPSEN, 1984 Preferential integration of yeast transposable element Ty into a promoter region. Nature 307: 386-388.
-
(1984)
Nature
, vol.307
, pp. 386-388
-
-
Eibel, H.1
Philippsen, P.2
-
13
-
-
0032086911
-
A single amino acid change in the yeast retrotransposon Ty5 abolishes targeting to silent chromatin
-
GAI, X., and D. F. VOYTAS, 1998 A single amino acid change in the yeast retrotransposon Ty5 abolishes targeting to silent chromatin. Mol. Cell 1: 1051-1055.
-
(1998)
Mol. Cell
, vol.1
, pp. 1051-1055
-
-
Gai, X.1
Voytas, D.F.2
-
14
-
-
0141455106
-
Post-transcriptional cosuppression of Ty1 retrotransposition
-
GARFINKEL, D. J., K. NYSWANER, J. WANG and J. Y. CHO, 2003 Post-transcriptional cosuppression of Ty1 retrotransposition. Genetics 165: 83-99.
-
(2003)
Genetics
, vol.165
, pp. 83-99
-
-
Garfinkel, D.J.1
Nyswaner, K.2
Wang, J.3
Cho, J.Y.4
-
15
-
-
17444373568
-
Genome-wide identification of Isw2 chromatin-remodeling targets by localization of a catalytically inactive mutant
-
GELBART, M. E., N. BACHMAN, J. DELROW, J. D. BOEKE and T. TSUKIYAMA, 2005 Genome-wide identification of Isw2 chromatin-remodeling targets by localization of a catalytically inactive mutant. Genes Dev. 19: 942-954.
-
(2005)
Genes Dev.
, vol.19
, pp. 942-954
-
-
Gelbart, M.E.1
Bachman, N.2
Delrow, J.3
Boeke, J.D.4
Tsukiyama, T.5
-
16
-
-
0042208453
-
Functional genomics reveals relationships between the retrovirus-like Ty1 element and its host Saccharomyces cerevisiae
-
GRIFFITH, J. L., L. E. COLEMAN, A. S. RAYMOND, S. G. GOODSON, W. S. PITTARD et al., 2003 Functional genomics reveals relationships between the retrovirus-like Ty1 element and its host Saccharomyces cerevisiae. Genetics 164: 867-879.
-
(2003)
Genetics
, vol.164
, pp. 867-879
-
-
Griffith, J.L.1
Coleman, L.E.2
Raymond, A.S.3
Goodson, S.G.4
Pittard, W.S.5
-
17
-
-
0032004369
-
RNA genes and retroelements in the yeast genome
-
HANI, J., and H. FELDMANN, 1998 tRNA genes and retroelements in the yeast genome. Nucleic Acids Res. 26: 689-696.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 689-696
-
-
Hani, J.1
Feldmann, H.2
-
18
-
-
0032567081
-
Dissecting the regulatory circuitry of a eukaryotic genome
-
HOLSTEGE, F. C., E. G. JENNINGS, J. J. WYRICK, T. I. LEE, C. J. HENGARTNER et al., 1998 Dissecting the regulatory circuitry of a eukaryotic genome. Cell 95: 717-728.
-
(1998)
Cell
, vol.95
, pp. 717-728
-
-
Holstege, F.C.1
Jennings, E.G.2
Wyrick, J.J.3
Lee, T.I.4
Hengartner, C.J.5
-
19
-
-
0345059358
-
Host genes that affect the target-site distribution of the yeast retrotransposon Ty1
-
HUANG, H., J. Y. HONG, C. L. BURCK and S. W. LIEBMAN, 1999 Host genes that affect the target-site distribution of the yeast retrotransposon Ty1. Genetics 151: 1393-1407.
-
(1999)
Genetics
, vol.151
, pp. 1393-1407
-
-
Huang, H.1
Hong, J.Y.2
Burck, C.L.3
Liebman, S.W.4
-
20
-
-
0027192351
-
Hotspots for unselected Ty1 transposition events on yeast chromosome III are near tRNA genes and LTR sequences
-
JI, H., D. P. MOORE, M. A. BLOMBERG, L. T. BRAITERMAN, D. F. VOYTAS et al., 1993 Hotspots for unselected Ty1 transposition events on yeast chromosome III are near tRNA genes and LTR sequences. Cell 73: 1007-1018.
-
(1993)
Cell
, vol.73
, pp. 1007-1018
-
-
Ji, H.1
Moore, D.P.2
Blomberg, M.A.3
Braiterman, L.T.4
Voytas, D.F.5
-
21
-
-
0343776143
-
The yeast retrotransposons Ty1 and Ty3 require the RNA Lariat debranching enzyme, Dbr1p, for efficient accumulation of reverse transcripts
-
KARST, S. M., M. L. RUTZ and T. M. MENEES, 2000 The yeast retrotransposons Ty1 and Ty3 require the RNA Lariat debranching enzyme, Dbr1p, for efficient accumulation of reverse transcripts. Biochem. Biophys. Res. Commun. 268: 112-117.
-
(2000)
Biochem. Biophys. Res. Commun.
, vol.268
, pp. 112-117
-
-
Karst, S.M.1
Rutz, M.L.2
Menees, T.M.3
-
22
-
-
0031832807
-
Transposable elements and genome organization: A comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence
-
KIM, J. M., S. VANGURI, J. D. BOEKE, A. GABRIEL and D. F. VOYTAS, 1998 Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res. 8: 464-478.
-
(1998)
Genome Res.
, vol.8
, pp. 464-478
-
-
Kim, J.M.1
Vanguri, S.2
Boeke, J.D.3
Gabriel, A.4
Voytas, D.F.5
-
23
-
-
0028936732
-
Requirement of RNA polymerase III transcription factors for in vitro position-specific integration of a retroviruslike element
-
KIRCHNER, J., C. M. CONNOLLY and S. B. SANDMEYER, 1995 Requirement of RNA polymerase III transcription factors for in vitro position-specific integration of a retroviruslike element. Science 267: 1488-1491.
-
(1995)
Science
, vol.267
, pp. 1488-1491
-
-
Kirchner, J.1
Connolly, C.M.2
Sandmeyer, S.B.3
-
25
-
-
0027398975
-
A ubiquitin-conjugating enzyme, RAD6, affects the distribution of Ty1 retrotransposon integration positions
-
LIEBMAN, S. W., and G. NEWNAM, 1993 A ubiquitin-conjugating enzyme, RAD6, affects the distribution of Ty1 retrotransposon integration positions. Genetics 133: 499-508.
-
(1993)
Genetics
, vol.133
, pp. 499-508
-
-
Liebman, S.W.1
Newnam, G.2
-
26
-
-
0024746178
-
Ty1 transposition in Saccharomyces cerevisiae is non-random
-
NATSOULIS, G., W. THOMAS, M. C. ROGHMANN, F. WINSTON and J. D. BOEKE, 1989 Ty1 transposition in Saccharomyces cerevisiae is non-random. Genetics 123: 269-279.
-
(1989)
Genetics
, vol.123
, pp. 269-279
-
-
Natsoulis, G.1
Thomas, W.2
Roghmann, M.C.3
Winston, F.4
Boeke, J.D.5
-
27
-
-
0035890135
-
The S. cerevisiae SET3 complex includes two histone deacetylases, Hos2 and Hst1, and is a meiotic-specific repressor of the sporulation gene program
-
PIJNAPPEL, W. W., D. SCHAFT, A. ROGUEV, A. SHEVCHENKO, H. TEKOTTE et al., 2001 The S. cerevisiae SET3 complex includes two histone deacetylases, Hos2 and Hst1, and is a meiotic-specific repressor of the sporulation gene program. Genes Dev. 15: 2991-3004.
-
(2001)
Genes Dev.
, vol.15
, pp. 2991-3004
-
-
Pijnappel, W.W.1
Schaft, D.2
Roguev, A.3
Shevchenko, A.4
Tekotte, H.5
-
28
-
-
0029670586
-
Influences of histone stoichiometry on the target site preference of retrotransposons Ty1 and Ty2 in Saccharomyces cerevisiae
-
RINCKEL, L. A., and D. J. GARFINKEL, 1996 Influences of histone stoichiometry on the target site preference of retrotransposons Ty1 and Ty2 in Saccharomyces cerevisiae. Genetics 142: 761-776.
-
(1996)
Genetics
, vol.142
, pp. 761-776
-
-
Rinckel, L.A.1
Garfinkel, D.J.2
-
29
-
-
8844265508
-
Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins
-
RINGROSE, L., and R. PARO, 2004 Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins. Annu. Rev. Genet. 38: 413-443.
-
(2004)
Annu. Rev. Genet.
, vol.38
, pp. 413-443
-
-
Ringrose, L.1
Paro, R.2
-
30
-
-
0037123767
-
Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases
-
ROBYR, D., Y. SUKA, I. XENARIOS, S. K. KURDISTANI, A. WANG et al., 2002 Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases. Cell 109: 437-446.
-
(2002)
Cell
, vol.109
, pp. 437-446
-
-
Robyr, D.1
Suka, Y.2
Xenarios, I.3
Kurdistani, S.K.4
Wang, A.5
-
31
-
-
0038286220
-
Integration by design
-
USA
-
SANDMEYER, S., 2003 Integration by design. Proc. Natl. Acad. Sci. USA 100: 5586-5588.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 5586-5588
-
-
Sandmeyer, S.1
-
32
-
-
0035692614
-
Multiple regulators of Ty1 transposition in Saccharomyces cerevisiae have conserved roles in genome maintenance
-
SCHOLES, D. T., M. BANERJEE, B. BOWEN and M. J. CURCIO, 2001 Multiple regulators of Ty1 transposition in Saccharomyces cerevisiae have conserved roles in genome maintenance. Genetics 159: 1449-1465.
-
(2001)
Genetics
, vol.159
, pp. 1449-1465
-
-
Scholes, D.T.1
Banerjee, M.2
Bowen, B.3
Curcio, M.J.4
-
33
-
-
0037162715
-
HIV-1 integration in the human genome favors active genes and local hotspots
-
SCHRODER, A. R., P. SHINN, H. CHEN, C. BERRY, J. R. ECKER et al., 2002 HIV-1 integration in the human genome favors active genes and local hotspots. Cell 110: 521-529.
-
(2002)
Cell
, vol.110
, pp. 521-529
-
-
Schroder, A.R.1
Shinn, P.2
Chen, H.3
Berry, C.4
Ecker, J.R.5
-
34
-
-
0027939848
-
Efficient homologous recombination of Ty1 element cDNA when integration is blocked
-
SHARON, G., T. J. BURKETT and D. J. GARFINKEL, 1994 Efficient homologous recombination of Ty1 element cDNA when integration is blocked. Mol. Cell. Biol. 14: 6540-6551.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 6540-6551
-
-
Sharon, G.1
Burkett, T.J.2
Garfinkel, D.J.3
-
35
-
-
0024669291
-
A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae
-
SIKORSKI, R. S., and P. HIETER, 1989 A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122: 19-27.
-
(1989)
Genetics
, vol.122
, pp. 19-27
-
-
Sikorski, R.S.1
Hieter, P.2
-
36
-
-
0345541427
-
Ty-mediated gene expression of the LYS2 and HIS4 genes of Saccharomyces cerevisiae is controlled by the same SPT genes
-
USA
-
SIMCHEN, G., F. WINSTON, C. A. STYLES and G. R. FINK, 1984 Ty-mediated gene expression of the LYS2 and HIS4 genes of Saccharomyces cerevisiae is controlled by the same SPT genes. Proc. Natl. Acad. Sci. USA 81: 2431-2434.
-
(1984)
Proc. Natl. Acad. Sci.
, vol.81
, pp. 2431-2434
-
-
Simchen, G.1
Winston, F.2
Styles, C.A.3
Fink, G.R.4
-
37
-
-
0037019333
-
Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast
-
SUN, Z. W., and C. D. ALLIS, 2002 Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast. Nature 418: 104-108.
-
(2002)
Nature
, vol.418
, pp. 104-108
-
-
Sun, Z.W.1
Allis, C.D.2
-
38
-
-
0037111879
-
Requirement of Hos2 histone deacetylase for gene activity in yeast
-
WANG, A., S. K. KURDISTANI and M. GRUNSTEIN, 2002 Requirement of Hos2 histone deacetylase for gene activity in yeast. Science 298: 1412-1414.
-
(2002)
Science
, vol.298
, pp. 1412-1414
-
-
Wang, A.1
Kurdistani, S.K.2
Grunstein, M.3
-
39
-
-
0024368680
-
Analysis of yeast retrotransposon Ty insertions at the CAN1 locus
-
WILKE, C. M., S. H. HEIDLER, N. BROWN and S. W. LIEBMAN, 1989 Analysis of yeast retrotransposon Ty insertions at the CAN1 locus. Genetics 123: 655-665.
-
(1989)
Genetics
, vol.123
, pp. 655-665
-
-
Wilke, C.M.1
Heidler, S.H.2
Brown, N.3
Liebman, S.W.4
-
40
-
-
0037841763
-
Transcription start regions in the human genome are favored targets for MLV integration
-
WU, X., Y. LI, B. CRISE and S. M. BURGESS, 2003 Transcription start regions in the human genome are favored targets for MLV integration. Science 300: 1749-1751.
-
(2003)
Science
, vol.300
, pp. 1749-1751
-
-
Wu, X.1
Li, Y.2
Crise, B.3
Burgess, S.M.4
-
41
-
-
0034816496
-
Targeting of the yeast Ty5 retrotransposon to silent chromatin is mediated by interactions between integrase and Sir4p
-
XIE, W., X. GAI, Y. ZHU, D. C. ZAPPULLA, R. STERNGLANZ et al., 2001 Targeting of the yeast Ty5 retrotransposon to silent chromatin is mediated by interactions between integrase and Sir4p. Mol. Cell. Biol. 21: 6606-6614.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 6606-6614
-
-
Xie, W.1
Gai, X.2
Zhu, Y.3
Zappulla, D.C.4
Sternglanz, R.5
-
42
-
-
0034703073
-
The Brf and TATA-binding protein subunits of the RNA polymerase III transcription factor IIIB mediate position-specific integration of the gypsy-like element, Ty3
-
YIEH, L., G. KASSAVETIS, E. P. GEIDUSCHEK and S. B. SANDMEYER, 2000 The Brf and TATA-binding protein subunits of the RNA polymerase III transcription factor IIIB mediate position-specific integration of the gypsy-like element, Ty3. J. Biol. Chem. 275: 29800-29807.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 29800-29807
-
-
Yieh, L.1
Kassavetis, G.2
Geiduschek, E.P.3
Sandmeyer, S.B.4
-
43
-
-
0037135522
-
Mutational analysis of the transcription factor IIIB-DNA target of Ty3 retroelement integration
-
YIEH, L., H. HATZIS, G. KASSAVETIS and S. B. SANDMEYER, 2002 Mutational analysis of the transcription factor IIIB-DNA target of Ty3 retroelement integration. J. Biol. Chem. 277: 25920-25928.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 25920-25928
-
-
Yieh, L.1
Hatzis, H.2
Kassavetis, G.3
Sandmeyer, S.B.4
-
44
-
-
0033569685
-
Tagging chromatin with retrotransposons: Target specificity of the Saccharomyces Ty5 retrotransposon changes with the chromosomal localization of Sir3p and Sir4p
-
ZHU, Y., S. ZOU, D. A. WRIGHT and D. F. VOYTAS, 1999 Tagging chromatin with retrotransposons: target specificity of the Saccharomyces Ty5 retrotransposon changes with the chromosomal localization of Sir3p and Sir4p. Genes Dev. 13: 2738-2749.
-
(1999)
Genes Dev.
, vol.13
, pp. 2738-2749
-
-
Zhu, Y.1
Zou, S.2
Wright, D.A.3
Voytas, D.F.4
-
45
-
-
0038612981
-
Controlling integration specificity of a yeast retrotransposon
-
USA
-
ZHU, Y., J. DAI, P. G. FUERST and D. F. VOYTAS, 2003 Controlling integration specificity of a yeast retrotransposon. Proc. Natl. Acad. Sci. USA 100: 5891-5895.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 5891-5895
-
-
Zhu, Y.1
Dai, J.2
Fuerst, P.G.3
Voytas, D.F.4
-
46
-
-
0028855624
-
The Saccharomyces Ty5 retrotransposon family is associated with origins of DNA replication at the telomeres and the silent mating locus HMR
-
USA
-
ZOU, S., D. A. WRIGHT and D. F. VOYTAS, 1995 The Saccharomyces Ty5 retrotransposon family is associated with origins of DNA replication at the telomeres and the silent mating locus HMR. Proc. Natl. Acad. Sci. USA 92: 920-924.
-
(1995)
Proc. Natl. Acad. Sci.
, vol.92
, pp. 920-924
-
-
Zou, S.1
Wright, D.A.2
Voytas, D.F.3
-
47
-
-
0029985540
-
The Saccharomyces retrotransposon Ty5 integrates preferentially into regions of silent chromatin at the telomeres and mating loci
-
ZOU, S., N. KE, J. M. KIM and D. F. VOYTAS, 1996 The Saccharomyces retrotransposon Ty5 integrates preferentially into regions of silent chromatin at the telomeres and mating loci. Genes Dev. 10: 634-645.
-
(1996)
Genes Dev.
, vol.10
, pp. 634-645
-
-
Zou, S.1
Ke, N.2
Kim, J.M.3
Voytas, D.F.4
|