-
1
-
-
0003187567
-
The atomic structure of protein-protein recognition sites
-
Lo Conte, L., Chothia, C., Janin, J.: The atomic structure of protein-protein recognition sites. J. Mol. Biol. 285 (1999) 2177-2198
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 2177-2198
-
-
Lo Conte, L.1
Chothia, C.2
Janin, J.3
-
2
-
-
0242299207
-
Atomic contact vectors in protein-protein recognition
-
Mintseris, J., Weng, Z.: Atomic contact vectors in protein-protein recognition. Proteins 53 (2003) 629-639
-
(2003)
Proteins
, vol.53
, pp. 629-639
-
-
Mintseris, J.1
Weng, Z.2
-
3
-
-
0036084361
-
The PROSITE database, its status in 2002
-
Falquet, L., Pagni, M., Bucher, P., Hulo, N., Sigrist, C., Hofmann, K., Bairoch, A.: The PROSITE database, its status in 2002. Nucleic Acids Res. 30 (2002) 235-238
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 235-238
-
-
Falquet, L.1
Pagni, M.2
Bucher, P.3
Hulo, N.4
Sigrist, C.5
Hofmann, K.6
Bairoch, A.7
-
4
-
-
0029973830
-
Derivation of 3D coordinate templates for searching structural databases: Application to Ser-His-Asp catalytic triads in the serine proteinases and lipases
-
Wallace, A.C., Laskowski, R.A., Thornton, J.M.: Derivation of 3D coordinate templates for searching structural databases: application to Ser-His-Asp catalytic triads in the serine proteinases and lipases. Protein Sci. 5 (1996) 1001-1013
-
(1996)
Protein Sci.
, vol.5
, pp. 1001-1013
-
-
Wallace, A.C.1
Laskowski, R.A.2
Thornton, J.M.3
-
5
-
-
1842507022
-
A new, structurally non-reduntant, diverse dataset of protein-protein interfaces and its implications
-
Keskin, A., Tsai, C.H., Wolfson, H.J., Nussinov, R.: A new, structurally non-reduntant, diverse dataset of protein-protein interfaces and its implications. Prot. Sci. 13(4) (2004) 1043-55
-
(2004)
Prot. Sci.
, vol.13
, Issue.4
, pp. 1043-1055
-
-
Keskin, A.1
Tsai, C.H.2
Wolfson, H.J.3
Nussinov, R.4
-
6
-
-
0038128338
-
Searching for patterns of amino acids in 3d protein structures
-
Spriggs, R.V., Artymiuk, P.J., Willett, P.: Searching for patterns of amino acids in 3d protein structures. J. Chem. Inf. Comput. Sci. 43 (2003) 412-421
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, pp. 412-421
-
-
Spriggs, R.V.1
Artymiuk, P.J.2
Willett, P.3
-
7
-
-
0036406643
-
A new method to detect related function among proteins independent of sequence or fold homology
-
Schmitt, S., Kuhn, D., Klebe, G.: A new method to detect related function among proteins independent of sequence or fold homology. J. Mol. Biol. 323 (2002) 387-406
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 387-406
-
-
Schmitt, S.1
Kuhn, D.2
Klebe, G.3
-
8
-
-
0041842509
-
Identification of protein biochemical functions by similarity search using the molecular surface database eF-site
-
Kinoshita, K., Nakamura, H.: Identification of protein biochemical functions by similarity search using the molecular surface database eF-site. Protein Sci. 12 (2003) 1589-1595
-
(2003)
Protein Sci.
, vol.12
, pp. 1589-1595
-
-
Kinoshita, K.1
Nakamura, H.2
-
9
-
-
2442614144
-
Recognition of functional sites in protein structures
-
Shulman-Peleg, A., Nussinov, R., Wolfson, H.J.: Recognition of functional sites in protein structures. J. Mol. Biol. 339(3) (2004) 607-633
-
(2004)
J. Mol. Biol.
, vol.339
, Issue.3
, pp. 607-633
-
-
Shulman-Peleg, A.1
Nussinov, R.2
Wolfson, H.J.3
-
10
-
-
0032568859
-
Detection of protein three-dimensional side-chain patterns: New examples of convergent evolution
-
Russell, R.: Detection of protein three-dimensional side-chain patterns: new examples of convergent evolution. J. Mol. Biol. 279(5) (1998) 1211-1227
-
(1998)
J. Mol. Biol.
, vol.279
, Issue.5
, pp. 1211-1227
-
-
Russell, R.1
-
11
-
-
35048856940
-
Protein-protein interfaces: Recognition of similar spatial and chemical organizations
-
Jonassen, I., Kim, J., eds.: Workshop on Algorithms in Bioinformatics
-
Shulman-Peleg, A., Mintz, S., Nussinov, R., Wolfson, H.: Protein-protein interfaces: Recognition of similar spatial and chemical organizations. In Jonassen, I., Kim, J., eds.: Workshop on Algorithms in Bioinformatics. (2004) 194-205 LNCS, 3240.
-
(2004)
LNCS
, vol.3240
, pp. 194-205
-
-
Shulman-Peleg, A.1
Mintz, S.2
Nussinov, R.3
Wolfson, H.4
-
12
-
-
24344487344
-
Generation and analysis of a protein-protein interface dataset with similar chemical and spatial patterns of interactions
-
in press
-
Mintz, S., Shulman-Peleg, A., Wolfson, H.J., Nussinov, R.: Generation and analysis of a protein-protein interface dataset with similar chemical and spatial patterns of interactions. Proteins in press (2005) http://bioinfo3d.cs. tau.ac.il/Interfaces/.
-
(2005)
Proteins
-
-
Mintz, S.1
Shulman-Peleg, A.2
Wolfson, H.J.3
Nussinov, R.4
-
13
-
-
84927133610
-
Computing largest common point sets under approximate congruence
-
Springer-Verlag
-
Ambuhl, C., Chakraborty, S., Gartner, B.: Computing largest common point sets under approximate congruence. In: Proceedings of the 8th Annual European Symposium on Algorithms, Springer-Verlag (2000) 52-63
-
(2000)
Proceedings of the 8th Annual European Symposium on Algorithms
, pp. 52-63
-
-
Ambuhl, C.1
Chakraborty, S.2
Gartner, B.3
-
14
-
-
0006106313
-
Approximate decision algorithms for point set congruence
-
Heffernan, P.J., Schirra, S.: Approximate decision algorithms for point set congruence. Comput. Geom. Theory Appl. 4 (1994) 137-156
-
(1994)
Comput. Geom. Theory Appl.
, vol.4
, pp. 137-156
-
-
Heffernan, P.J.1
Schirra, S.2
-
15
-
-
0142236211
-
On the approximation of largest common subtrees and largest common point sets
-
Akutsu, T., Halldorson, M.M.: On the approximation of largest common subtrees and largest common point sets. Theoretical Computer Science 233 (2000) 33-50
-
(2000)
Theoretical Computer Science
, vol.233
, pp. 33-50
-
-
Akutsu, T.1
Halldorson, M.M.2
-
16
-
-
26444502671
-
Recognition of binding patterns common to a set of protein structures
-
Miyano, S., ed.: RECOMB 2005, Cambridge MA
-
Shatsky, M., Shulman-Peleg, A., Nussinov, R., Wolfson, H.: Recognition of binding patterns common to a set of protein structures. In Miyano, S., ed.: RECOMB 2005, Cambridge MA. Volume 3500. LNCS (2005) 440-455
-
(2005)
LNCS
, vol.3500
, pp. 440-455
-
-
Shatsky, M.1
Shulman-Peleg, A.2
Nussinov, R.3
Wolfson, H.4
-
17
-
-
0028304962
-
Satisfying hydrogen bonding potential in proteins
-
McDonald, I.K., Thornton, J.M.: Satisfying hydrogen bonding potential in proteins. J. Mol. Biol. 238 (1994) 777-793
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 777-793
-
-
McDonald, I.K.1
Thornton, J.M.2
-
18
-
-
0035756318
-
Structure of small G proteins and their regulators
-
Paduch, M., Jelen, F., Otlewski, J.: Structure of small G proteins and their regulators. Acta Biochim Pol. 48 (2001) 829-50
-
(2001)
Acta Biochim Pol.
, vol.48
, pp. 829-850
-
-
Paduch, M.1
Jelen, F.2
Otlewski, J.3
-
19
-
-
11144219896
-
Always look on the bright site of Rho: Structural implications for a conserved intermolecular interface
-
Dvorsky, R., Ahmadian, M.R.: Always look on the bright site of Rho: structural implications for a conserved intermolecular interface. EMBO Rep. 5 (2004) 1130-6
-
(2004)
EMBO Rep.
, vol.5
, pp. 1130-1136
-
-
Dvorsky, R.1
Ahmadian, M.R.2
-
20
-
-
84956971981
-
MultiProt - A multiple protein structural alignment algorithm
-
Guigo, R., Gusfield, D., eds.: Springer Verlag
-
Shatsky, M., Nussinov, R., Wolfson, H.: MultiProt - a multiple protein structural alignment algorithm. In Guigo, R., Gusfield, D., eds.: Workshop on Algorithms in Bioinformatics. Volume 2452. Springer Verlag (2002) 235-250
-
(2002)
Workshop on Algorithms in Bioinformatics
, vol.2452
, pp. 235-250
-
-
Shatsky, M.1
Nussinov, R.2
Wolfson, H.3
-
21
-
-
0142143332
-
MASS: Multiple structural alignment by secondary structures
-
Dror, O., Benyamini, H., Nussinov, R., Wolfson, H.: MASS: multiple structural alignment by secondary structures. Bioinformatics 19 Suppl. 1 (2003) i95-i104
-
(2003)
Bioinformatics
, vol.19
, Issue.1 SUPPL.
-
-
Dror, O.1
Benyamini, H.2
Nussinov, R.3
Wolfson, H.4
-
22
-
-
19544372768
-
Hydration of protein-protein interfaces
-
Rodier, F., Bahadur, R., Chakrabarti, P., Janin, J.: Hydration of protein-protein interfaces. Proteins 60 (2005) 36-45
-
(2005)
Proteins
, vol.60
, pp. 36-45
-
-
Rodier, F.1
Bahadur, R.2
Chakrabarti, P.3
Janin, J.4
-
23
-
-
0002761958
-
Measurement of protein surfaces shape by solid angles
-
Connolly, M.L.: Measurement of protein surfaces shape by solid angles. J. Mol. Graph. 4 (1986) 3-6
-
(1986)
J. Mol. Graph.
, vol.4
, pp. 3-6
-
-
Connolly, M.L.1
|