A proteomic approach to the identification and characterisation of protein composition in wheat germ

Functional and Integrative Genomics

Volumn 6, Issue 4, 2006, Pages 322-337

  Mak, Yunxian ^a,b,c   Skylas, Daniel J ^a,b   Willows, Robert ^a   Connolly, Angela ^a   Cordwell, Stuart J ^a   Wrigley, Colin W ^b,d   Sharp, Peter J ^b,c   Copeland, Les ^c  

^a MACQUARIE UNIVERSITY   (Australia)

^b Value Added Wheat CRC Ltd   (Australia)

^c UNIVERSITY OF SYDNEY   (Australia)

^d CSIRO   (Australia)

Author keywords

Embryo; Germination; Metabolic enzymes; Nutrition

Indexed keywords

CYTOCHROME C OXIDASE; DNA DIRECTED RNA POLYMERASE III; ELONGATION FACTOR 1BETA; ENOLASE; FERREDOXIN NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE REDUCTASE; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; HOMEODOMAIN PROTEIN; HYDROLASE; MALATE DEHYDROGENASE; OXIDOREDUCTASE; PHOSPHOGLUCONATE DEHYDROGENASE; PHOSPHOGLYCERATE KINASE; POLYADENYLIC ACID BINDING PROTEIN; PROTEASOME; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE ALPHA; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE BETA; RIBOSOME PROTEIN; RNA HELICASE; SERINE CARBOXYPEPTIDASE; SERINE CARBOXYPEPTIDASE III; SIGMA FACTOR; SUCCINYL COENZYME A SYNTHETASE; TRANSCRIPTION ELONGATION FACTOR; TRANSCRIPTION FACTOR; TRANSFERASE; UBIQUITIN; UNCLASSIFIED DRUG; VEGETABLE PROTEIN; ZINC FINGER PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; CULTIVAR; ENERGY RESOURCE; GENOTYPE; GERMINATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PH MEASUREMENT; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEOMICS; SEQUENCE DATABASE; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; TWO DIMENSIONAL GEL ELECTROPHORESIS; UNINDEXED SEQUENCE; WHEAT GERM;

ELECTROPHORESIS, POLYACRYLAMIDE GEL; GERMINATION; MASS SPECTROMETRY; PEPTIDE MAPPING; PLANT PROTEINS; PROTEOME; PROTEOMICS; SEEDS; TRITICUM;

TRITICUM AESTIVUM;

EID: 33646084329     PISSN: 1438793X     EISSN: 14387948     Source Type: Journal    
DOI: 10.1007/s10142-005-0018-8     Document Type: Article

References (26)

1. Amiour N, Merlino M, Leroy P, Branlard G (2002) Proteomic analysis of amphiphilic proteins of hexaploid wheat kernels. Proteomics 2:632-641
2. Bevan M, Bancroft I et al (1998) Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana. Nature 391:485-488
3. Branlard G, Amiour N, Igrejas G, Gaborit T, Herbette S, Dardevet M, Marion D (2003) Diversity of puroindolines as revealed by two-dimensional electrophoresis. Proteomics 3:168-174
4. Clarke BC, Hobbs M, Skylas D, Appels R (2000) Genes active in developing wheat endosperm. Funct Integr Genomics 1:44-55
5. Cornish GB, Skylas DJ, Siriamornpun S, Bekes F, Wrigley CW, Wootton M (2001) Grain proteins as markers of genetic traits in wheat. Aust J Agric Res 52:1161-1171
6. Cozzolino R, DiGiorgi S, Fisichella S, Garozzo D, Lafiandra D, Palermo A (2001) Proteomics of gluten: Mapping of subunit 1 A×2* in Cheyenne cultivar by matrix-assisted laser desorption/ionisation. Rapid Commun Mass Spectrom 15:1129-1135
7. Granier F (1988) Extraction of plant proteins for two-dimensional electrophoresis. Electrophoresis 9:712-718
8. Gorg A, Obermaier C, Boguth G, Harder A, Scheibe B, Wildgruber R, Weiss W (2000) The current state of two-dimensional electrophoresis with immobilised pH gradients. Electrophoresis 21:1037-1053
9. Fu BX, Sapirstein HD (1996) Procedure for isolating monomeric and polymeric glutenin of wheat. Cereal Chem 73:143-152
10. Khatkar BS, Schofield JD (1997) Molecular and physicochemical basis of breadmaking - properties of wheat gluten proteins: A critical appraisal. J Food Sci Technol 34:85-102
11. Majoul T, Bancel E, Triboi E, Ben Hamida J, Branlard G (2004) Proteomic analysis of the effect of heat stress on hexaploid wheat grain: characterization of heat-responsive proteins from non-prolamins fraction. Proteomics 4:505-513
12. Marcus A, Efron D, Weeks DP (1974) The wheat embryo cell-free system. Methods Enzymol 30:749-754
13. Mares DJ, Mrva K (2001) Mapping quantitative trait loci associated with variation in grain dormancy in Australian wheat. Aust J Agric Res 52:1257-1265
14. Mikami S, Kishimoto T, Hori H, Mitsui T (2002) Technical improvement to 2D-PAGE of rice organelle membrane proteins. Biosci Biotechnol Biochem 66:1170-1173
15. Neuhoff V, Arold N, Taube D, Ehrhardt W (1988) Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie brilliant blue G-250 and R-250. Electrophoresis 9(6):255-262
16. Nouwens AS, Cordwell SJ, Larsen MR, Molloy MP, Gillings M, Willcox MDP, Walsh BJ (2000) Complementing genomics with proteomics: The membrane subproteome of Pseudomonas aeruginosa. Electrophoresis 21:3797-3809
17. Shimoni Y, Zhu Xz, Levanony H, Segal G, Galili G (1995) Purification, characterization, and intracellular localization of glycosylated protein disulfide isomerase from wheat grains plant. Physiology 108(1):327-334
18. Skylas DJ, Mackintosh JA, Cordwell SJ, Basseal DJ, Walsh BJ, Harry J, Blumenthal C, Copeland L, Wrigley CW, Rathmell W (2000) Proteome approach to the characterisation of protein composition in the developing and mature wheat-grain endosperm. J Cereal Sci 32:169-188
19. Skylas DJ, Van Dyk D, Wrigley CW (2005) Proteomics of wheat grain. J Cereal Sci 41:165-179
20. Tatham AS, Shewry PR, Belton PS (1990) Structural studies of cereal prolamins, including wheat gluten. In: Pomeranz Y (ed) Advances in cereal science and technology. American Association of Cereal Chemist, Cereal Chemistry Inc., St. Paul pp 1-78
21. Thiellement H, Bahrman N, Damerval C, Plomion C, Rossignol M, Santoni V, de Vienne D, Zivy M (1999) Proteomics for genetic and physiological studies in plants. Electrophoresis 20:2013-2026
22. Timothy JS, Isaiah TA (2000) Do more complex organisms have a greater proportion of membrane proteins in their genomes? Proteins 39:417-420
23. Williams KL (1999) Genomes and proteomes: Towards a multidimensional view of biology. Electrophoresis 20:678-688
24. Williams KL, Hochstrasser DF (1997) Introduction to the proteome. In: Wilkins MR, Williams KL, Appel RD, Hochstrasser DF (eds) Proteome research: New frontiers in functional genomics. Springer, Berlin Heidelberg New York, pp 1-12
25. Wong JH, Cai N, Balmer Y, Tanaka CK, Vensel WH, Hurkman WJ, Buchanan BB (2004) Thioredoxin targets of developing wheat seeds identified by complementary proteomic approaches. Phytochemistry 65:1629-1640
26. Wu G, Wilen RW, Robertson AJ, Gusta LV (1999) Isolation, chromosomal localisation, and differential expression of mitochondrial manganese superoxide dismutase and chloroplastic copper/zinc superoxide dismutase genes in wheat. Plant Physiol 120(2):513-520