Molecular phylogeny and historical biogeography of the land snail genus Solatopupa (Pulmonata) in the peri-Tyrrhenian area

Molecular Phylogenetics and Evolution

Volumn 39, Issue 2, 2006, Pages 439-451

  Ketmaier, Valerio ^a,b,c   Giusti, Folco ^d   Caccone, Adalgisa ^b  

^a UNIVERSITY OF POTSDAM   (Germany)

^b YALE UNIVERSITY   (United States)

^c SAPIENZA UNIVERSITY OF ROME   (Italy)

^d UNIVERSITY OF SIENA   (Italy)

Author keywords

12s; 16s; COI; H3; Land snail; Molecular clock; Molecular phylogeny; Solatopupa

Indexed keywords

CYTOCHROME C OXIDASE; HISTONE; MITOCHONDRIAL DNA; RIBOSOME RNA; RNA 16S; RNA, RIBOSOMAL, 12S;

ANIMAL; ARTICLE; BIODIVERSITY; CELL NUCLEUS; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; FRANCE; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; ITALY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SNAIL; SOUTHERN EUROPE; SPECIES DIFFERENTIATION; TIME;

ANIMALS; BIODIVERSITY; CELL NUCLEUS; DNA, MITOCHONDRIAL; ELECTRON TRANSPORT COMPLEX IV; FRANCE; GENETIC SPECIATION; GEOGRAPHY; HISTONES; ITALY; MEDITERRANEAN ISLANDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SNAILS; TIME FACTORS; VARIATION (GENETICS);

GASTROPODA; PULMONATA; SOLATOPUPA; STYLOMMATOPHORA;

EID: 33646025498     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2005.12.008     Document Type: Article

References (69)

1. Alvarez W. Rotation of the Corsica-Sardinia microplate. Nature 235 (1972) 103-105
2. Alvarez W. Sardinia and Corsica, one microplate or two? Rendiconti del Seminario della Facoltà di Scienze dell'Università di Cagliari (1974), Libreria Cocco, Cagliari
3. Bellon H., Coulon C., and Edel J.B. Le déplacement de la Sardigne: synthèse des donnees géochronologiques, magmatiques et paléomagnétiques. Bull. Soc. Géol. Fr. 7 (1977) 825-831
4. Boato A. A preliminary karyological analysis of five species of Solatopupa (Pulmonata, Chondrinidae). Boll. Zool. 53 (1986) 15-22
5. Boato A. Microevolution in Solatopupa landsnails (Pulmonata Chondrinidae): genetic diversity and founder effects. Biol. J. Linn. Soc. 34 (1988) 327-348
6. Boato A. Allozyme versus discrete morphologic characters in the phylogenetic analysis of the land snail Solatopupa (Pulmonata, Chondrinidae). Boll. Zool. 58 (1991) 345-354
7. Boato A., and Rodinò E. Genetic diversity and microevolutionary processes within the genus Solatopupa Pilsbry (Pulmonata, Chondrinidae). Boll. Zool. 53 (1986) 63
8. Boccaletti M., Ciaranfi N., Cosentino D., Deiana G., Gelati R., Lentini F., Massari F., Moratti G., Pescatore T., Ricci Lucchi F., and Tortorici L. Palinspatic restoration and paleogeographic reconstruction of the peri-Tyrrhenian area during the Neogene. Palaeogeogr. Palaeoclimatol. Palaeoecol. 77 (1990) 41-50
9. Bonin B., Chotin P., Giret A., and Orsini J.B. Etude du bloc corso-sarde sur documents satellites: Le problème des mouvements différentiels entre les deux iles. Rev. Geogr. Phys. Geol. Dynam. 21 (1979) 147-154
10. Caccone A., Milinkovitch M.C., Sbordoni V., and Powell J.R. Molecular biogeography: using the Corsica-Sardinia microplate disjunction to calibrate mithocondrial rDNA evolutionary rates in mountain newts (Euproctus). J. Evol. Biol. 7 (1994) 227-245
11. Caccone A., Milinkovitch M.C., Sbordoni V., and Powell J.R. Mithocondrial DNA rates and biogeography in European newts (genus Euproctus). Syst. Biol. 46 (1997) 126-144
12. Caccone A., and Sbordoni V. Molecular biogeography of cave life: a study using mitochondrial DNA from Bathysciine beetles. Evolution 55 (2001) 122-130
13. Carmignani L., Decandia F.A., Disperati L., Fantozzi P.L., Lazzarotto A., Liotta D., and Oggiano G. Relationships between the tertiary structural evolution of the Sardinia-Corsica-provencal domain and the Northern Apennines. Terra Nova 7 (1995) 128-137
14. Chamot-Rooke N., Gaulier J.M., and Jestin F. Constraints on Moho depth and crustal thickness in the Liguro-Provençal basin from a 3D gravity inversion: geodynamic implications. Geol. Soc. London Spec. Publ. 156 (1999) 37-61
15. Cherchi A., and Montadert L. Oligo-Miocene rift of Sardinia and the early history of the western Mediterranean basin. Nature 298 (1982) 736-739
16. Chiba S. Accelerated evolution of land snails Mandarina in the oceanic Bonin islands: evidence from mitochondrial DNA sequences. Evolution 53 (1999) 460-471
17. Cobolli Sbordoni M., De Matthaeis E., Alonzi A., Mattoccia M., Omodeo P., and Rota E. Speciation, genetic divergence and palaeogeography in the Hormogastridae. Soil Biol. Biochem. 24 (1992) 1213-1221
18. Colgan D.J., Ponder W.F., and Eggler P.E. Gastropod evolutionary rates and phylogenetic relationships assessed using partial 28S rDNA and histone H3 sequences. Zool. Scr. 29 (2000) 29-63
19. Edel J.B., Dubois D., Marchant R., Hernandez J., and Cosca M. La rotation miocène inférieur du bloc corso-sarde. Nouvelles contraintes paléomagnétiques sur la fin du mouvement. Bull. Soc. Géol. Fr. 172 (2001) 275-283
20. Esu D., and Kotsakis T. Les vertebres et les mollusques continentaux du Tertiarire de la Sardaigne: Paleobiogeographie et biostratigraphie. Geol. Romana 22 (1983) 177-206
21. Farris J.S. Methods for computing Wagner trees. Syst. Zool. 18 (1970) 374-385
22. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17 (1981) 368-376
23. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
24. Fochetti R. Biochemical systematics and biogeographical patterns of the Italian and Corsican species of the Protonemura corsicana species group. Aquat. Insect 16 (1994) 1-15
25. Fochetti R., Ketmaier V., Oliverio M., Tierno de Figueroa J.M., and Sezzi E. Biochemical systematics and biogeography of the Mediterranean genus Tyrrhenoleuctra (Plecoptera, Insecta). Insect Syst. Evol. 35 (2004) 299-306
26. Folmer O., Black M., Hoeh W., Lutz R., and Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 3 (1994) 294-299
27. Gillooly J.F., Allen P.A., West G.B., and Brown J.H. Metabolic rate calibrates the molecular clock: reconciling molecular and fossil estimates of evolutionary divergence. Proc. Natl. Acad. Sci. USA 102 (2005) 140-145
28. Giokas S. Congruence and conflict in Albinaria (Gastropoda, Clausiliidae). A review of morphological and molecular phylogenetic approaches. Belg. J. Zool. 130 (2000) 93-100
29. Gittenberger E. Vicariantists and dispersalists among the Chondrininae (Gastropoda, Pulmonata). In: Solem A., and Van Bruggen A.C. (Eds). World-wide snail. Biogeographical studies on non-marine Mollusca (1984), Brill and Backhuys, Leiden 56-69
30. Giusti F., Grappelli C., Manganelli G., Fondi R., and Bullini L. An attempt of natural classification of the genus Medora in Italy and Yugoslavia, on the basis of conchological, anatomical and allozymic characters (Pulmonata: Clausiliidae). Lav. Soc. Ital. Malacol. 22 (1986) 259-362
31. Giusti, F., Manganelli, G., 1988. The problem of the species in Malacology after clear evidence of the limits of morphological systematics. In: Proceedings of the Ninth International Malacological Congress, pp. 153-172.
32. Goldman N. Statistical tests of models of DNA substitution. J. Mol. Evol. 36 (1993) 182-198
33. Goodfriend G.A. Variation in land snail shell form and size and its causes: a review. Syst. Zool. 35 (1986) 204-223
34. Govindarajan A.F., Halanych K.M., and Cunningham C.W. Mitochondrial evolution and phylogeography in the hydrozoan Obelia geniculata (Cnidaria). Mar. Biol. 146 (2005) 213-222
35. Huelsenbeck, J.P., 2000. MrBayes: Bayesian inference of phylogeny. Distributed by the author. Department of Biology, University of Rochester, Rochester, NY.
36. Ketmaier V., Argano R., and Caccone A. Phylogeography and molecular rates of subterranean aquatic Stenasellid Isopod with a peri-Tyrrhenian distribution. Mol. Ecol. 12 (2003) 547-555
37. Ketmaier V., Argano R., Cobolli M., and De Matthaeis E. Genetic divergence and evolutionary times: calibrating a protein clock for South-European Stenasellus species (Crustacea, Isopoda). Int. J. Speleol. 26 (1999) 63-74
38. Ketmaier V., Messana G., Cobolli M., De Matthaeis E., and Argano R. Biochemical biogeography and evolutionary relationships among the six known populations of Stenasellus racovitzai (Crustacea, Isopoda) from Corsica, Tuscany and Sardinia. Arch. Hydrobiol. 147 (2000) 297-309
39. Lanza B. Sul significato biogeografico delle isole fossili, con particolare riferimento all'Arcipelago pliocenico della Toscana. Atti Soc. it. Sc. Nat. 125 (1984) 145-158
40. Larget B., and Simon D. Markov chain Monte Carlo algorithm for Bayesian analysis of phylogenetic trees. Mol. Biol. Evol. 16 (1999) 750-759
41. Maddison, W.P., Maddison, D.R., 2003. Mesquite: a modular system for evolutionary analysis. Version 1.0. .
42. Marko P. Fossil calibration of molecular clocks and divergence times of geminate species pairs separated by the Isthmus of Panama. Mol. Biol. Evol. 19 (2002) 2005-2021
43. Mau B., and Newton M. Phylogenetic inference for binary data on dendrograms using Markov chain Monte Carlo. J. Comput. Graph. Stat. 6 (1997) 122-131
44. Mau B., Newton M., and Larget B. Bayesian phylogenetic inference via Markov chain Monte Carlo methods. Biometrics 55 (1999) 1-12
45. Meulenkamp J.E., and Sissingh W. Tertiary palaeogeography and tectonostratigraphic evolution of the Northern and Southern Peri-Tethys platforms and the intermediate domains of the African-Eurasian convergent plate boundary zone. Palaeogeogr. Palaeoclimatol. Palaeoecol. 196 (2003) 209-228
46. Oosterbroek P., and Arntzen J.W. Area-cladograms of Circum-Mediterranean taxa in relation to Mediterranean palaeogeography. J. Biogeogr. 19 (1992) 3-20
47. Ozawa T., and Okamoto K. Implication of molecular phylogeny: analysis of mitochondrial DNA of Umbonium. Chikyu 15 (1993) 589-595
48. Palumbi S., Martin A., Romano S., McMillan W.O., Stice L., and Grabowski G. The Simple Fool's Guide to PCR. Version 2.0 (1991), University of Hawaii, Honolulu
49. Pfenninger M., Eppenstein A., and Magnin F. Evidence for geological speciation in the sister species Candidula unifasciata (Poiret, 1801) and C.rugosiuscula (Michaud, 1831) (Helicellinae, Gastropoda). Biol. J. Linn. Soc. 79 (2003) 611-628
50. Pfenninger M., and Magnin F. Phenotypic evolution and hidden speciation in Candidula unifasciata ssp. (Helicellinae, Gastropoda) inferred by 16s variation and quantitative shell traits. Mol. Ecol. 10 (2001) 2541-2554
51. Posada D., and Crandall K. Modeltest: testing the model of DNA substitutions. Bioinformatics 14 (1998) 817-818
52. Rannala B., and Yang H. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J. Mol. Evol. 43 (1996) 304-311
53. Riesenberg L.H. Chromosomal rearrangements and speciation. Trends Ecol. Evol. 16 (2001) 351-358
54. Robertson A.H.F., and Grasso M. Overview of the late Tertiary-Recent tectonic and palaeo-environmental development of the Mediterranean region. Terra Nova 7 (1995) 114-127
55. Rumbak E., Reid D.G., and Thomas R.H. Reconstruction of phylogeny of 11 species of Littorina (Gastropoda, Littrinidae) using mitochondrial DNA sequence data. Nautilus 2 (1994) 91-97
56. Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
57. Sanderson M.J. A non-parametric approach to estimating divergence times in the absence of rate constancy. Mol. Biol. Evol. 14 (1997) 1218-1231
58. Sanderson M.J. Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach. Mol. Biol. Evol. 19 (2002) 101-109
59. Sanderson M.J. R8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics Appl. Notes 19 (2003) 301-302
60. Shearer T.L., Van Oppen M.J.H., Romano L., and Wörheide G. Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria). Mol. Ecol. 11 (2002) 2475-2487
61. Shimodaira H. An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 51 (2002) 492-508
62. Shimodaira H., and Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16 (1999) 1114-1116
63. Shimodaira H., and Hasegawa M. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics Appl. Notes 17 (2001) 1246-1247
64. Steininger F.F., and Rögl F. Paleogeography and palinspatic reconstruction of the Neogene of the Mediterranean and Paratethys. In: Dixon J.E., and Robertson A.H.F. (Eds). The geological evolution of the eastern Mediterranean (1984), Blackwell Scientific Publications, Oxford 659-668
65. Strimmer K., and Rambaut A. Inferring confidence sets of possibly misspecified gene trees. Proc. R. Soc. Lond. B. 269 (2002) 137-142
66. Swofford D.L. PAUP* β-version 4.10 (2003), Sinauer Associates Inc., Sunderland
67. Thomaz D., Guiller D., and Clarke A.. Extreme divergence of mitochondrial DNA within species of pulmonate land snails. Proc. R. Soc. B. 263 (1996) 363-368
68. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The ClustalX-Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acid. Res. 25 (1997) 4876-4882
69. Van der Meulen M.J. Slab detachment and the evolution of the Apenninic arc (Italy). Geol. Ultraiectina 170 (1999) 1-136