Cloning and characterization of mr-s, a novel SAM domain protein, predominantly expressed in retinal photoreceptor cells

BMC Developmental Biology

Volumn 6, Issue , 2006, Pages

  Inoue, Tatsuya ^a,b,c   Terada, Koji ^a   Furukawa, Akiko ^a,d   Koike, Chieko ^a   Tamaki, Yasuhiro ^c   Araie, Makoto ^c   Furukawa, Takahisa ^a,b  

^a OSAKA BIOSCIENCE INSTITUTE   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^c UNIVERSITY OF TOKYO   (Japan)

^d OSAKA UNIVERSITY MEDICAL SCHOOL   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

HOMEODOMAIN PROTEIN; HOMEODOMAIN PROTEIN CRX; MAJOR RETINAL STERILE ALPHA MOTIF DOMAIN PROTEIN; PROTEIN; TRANSCRIPTION FACTOR GAL4; UNCLASSIFIED DRUG;

ANIMAL TISSUE; ARTICLE; CELL DIFFERENTIATION; CLONING; DNA BINDING; DNA TRANSCRIPTION; EPIGENETICS; GENE EXPRESSION REGULATION; HUMAN; HUMAN CELL; IMMUNOPRECIPITATION; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHOTORECEPTOR; PHYLOGENY; PINEAL BODY; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN INTERACTION; PROTEIN LOCALIZATION; RETINA CONE; RETINA ROD;

ANIMALIA; DANIO RERIO;

EID: 33645830231     PISSN: 1471213X     EISSN: 1471213X     Source Type: Journal    
DOI: 10.1186/1471-213X-6-15     Document Type: Article

References (50)

1. Young RW: Cell differentiation in the retina of the mouse. Anat Rec 1985, 212(2):199-205.
2. Cepko CL, Austin CP, Yang X, Alexiades M, Ezzeddine D: Cell fate determination in the vertebrate retina. Proc Natl Acad Sci U S A 1996, 93(2):589-595.
3. Furukawa T, Morrow EM, Cepko CL: Crx, a novel otx-like homeobox gene, shows photoreceptor-specific expression and regulates photoreceptor differentiation. Cell 1997, 91(4):531-541.
4. Milam AH, Rose L, Cideciyan AV, Barakat MR, Tang WX, Gupta N, Aleman TS, Wright AF, Stone EM, Sheffield VC, Jacobson SG: The nuclear receptor NR2E3 plays a role in human retinal photoreceptor differentiation and degeneration. Proc Natl Acad Sci U S A 2002, 99(1):473-478.
5. Ng L, Hurley JB, Dierks B, Srinivas M, Salto C, Vennstrom B, Reh TA, Forrest D: A thyroid hormone receptor that is required for the development of green cone photoreceptors. Nat Genet 2001, 27(1):94-98.
6. Chen S, Wang QL, Nie Z, Sun H, Lennon G, Copeland NG, Gilbert DJ, Jenkins NA, Zack DJ: Crx, a novel Otx-like paired-homeodomain protein, binds to and transactivates photoreceptor cell-specific genes. Neuron 1997, 19(5):1017-1030.
7. Mears AJ, Kondo M, Swain PK, Takada Y, Bush RA, Saunders TL, Sieving PA, Swaroop A: Nrl is required for rod photoreceptor development. Nat Genet 2001, 29(4):447-452.
8. Furukawa T, Morrow EM, Li T, Davis FC, Cepko CL: Retinopathy and attenuated circadian entrainment in Crx-deficient mice. Nat Genet 1999, 23(4):466-470.
9. Nishida A, Furukawa A, Koike C, Tano Y, Aizawa S, Matsuo I, Furukawa T: Otx2 homeobox gene controls retinal photoreceptor cell fate and pineal gland development. Nat Neurosci 2003, 6(12):1255-1263.
10. Morrow EM, Furukawa T, Raviola E, Cepko CL: Synaptogenesis and outer segment formation are perturbed in the neural retina of Crx mutant mice. BMC Neurosci 2005, 6(1):5.
11. Freund CL, Gregory-Evans CY, Furukawa T, Papaioannou M, Looser J, Ploder L, Bellingham J, Ng D, Herbrick JA, Duncan A, Scherer SW, Tsui LC, Loutradis-Anagnostou A, Jacobson SG, Cepko CL, Bhattacharya SS, McInnes RR: Cone-rod dystrophy due to mutations in a novel photoreceptor-specific homeobox gene (CRX) essential for maintenance of the photoreceptor. Cell 1997, 91(4):543-553.
12. Sohocki MM, Sullivan LS, Mintz-Hittner HA, Birch D, Heckenlively JR, Freund CL, McInnes RR, Daiger SP: A range of clinical phenotypes associated with mutations in CRX, a photoreceptor transcription-factor gene. Am J Hum Genet 1998, 63(5):1307-1315.
13. Sohocki MM, Daiger SP, Bowne SJ, Rodriquez JA, Northrup H, Heckenlively JR, Birch DG, Mintz-Hittner H, Ruiz RS, Lewis RA, Saperstein DA, Sullivan LS: Prevalence of mutations causing retinitis pigmentosa and other inherited retinopathies. Hum Mutat 2001, 17(1):42-51.
14. Swaroop A, Wang QL, Wu W, Cook J, Coats C, Xu S, Chen S, Zack DJ, Sieving PA: Leber congenital amaurosis caused by a homozygous mutation (R90W) in the homeodomain of the retinal transcription factor CRX: direct evidence for the involvement of CRX in the development of photoreceptor function. Hum Mol Genet 1999, 8(2):299-305.
15. Kim CA, Bowie JU: SAM domains: uniform structure, diversity of function. Trends Biochem Sci 2003, 28(12):625-628.
16. Ponting CP: SAM: a novel motif in yeast sterile and Drosophila polyhomeotic proteins. Protein Sci 1995, 4(9):1928-1930.
17. Qiao F, Song H, Kim CA, Sawaya MR, Hunter JB, Gingery M, Rebay I, Courey AJ, Bowie JU: Derepression by depolymerization; structural insights into the regulation of Yan by Mae. Cell 2004, 118(2):163-173.
18. Kyba M, Brock HW: The Drosophila polycomb group protein Psc contacts ph and Pc through specific conserved domains. Mol Cell Biol 1998, 18(5):2712-2720.
19. Tu H, Barr M, Dong DL, Wigler M: Multiple regulatory domains on the Byr2 protein kinase. Mol Cell Biol 1997, 17(10):5876-5887.
20. Tessier-Lavigne M: Eph receptor tyrosine kinases, axon repulsion, and the development of topographic maps. Cell 1995, 82(3):345-348.
21. Chi SW, Ayed A, Arrowsmith CH: Solution structure of a conserved C-terminal domain of p73 with structural homology to the SAM domain. Embo J 1999, 18(16):4438-4445.
22. Green JB, Gardner CD, Wharton RP, Aggarwal AK: RNA recognition via the SAM domain of Smaug. Mol Cell 2003, 11(6):1537-1548.
23. Nagaya H, Wada I, Jia YJ, Kanoh H: Diacylglycerol kinase delta suppresses ER-to-Golgi traffic via its SAM and PH domains. Mol Biol Cell 2002, 13(1):302-316.
24. Sakane F, Kai M, Wada I, Imai S, Kanoh H: The C-terminal part of diacylglycerol kinase alpha lacking zinc fingers serves as a catalytic domain. Biochem J 1996, 318 ( Pt 2):583-590.
25. Ramachander R, Kim CA, Phillips ML, Mackereth CD, Thanos CD, McIntosh LP, Bowie JU: Oligomerization-dependent association of the SAM domains from Schizosaccharomyces pombe Byr2 and Ste4. J Biol Chem 2002, 277(42):39585-39593.
26. Slupsky CM, Gentile LN, Donaldson LW, Mackereth CD, Seidel JJ, Graves BJ, McIntosh LP: Structure of the Ets-1 pointed domain and mitogen-activated protein kinase phosphorylation site. Proc Natl Acad Sci U S A 1998, 95(21):12129-12134.
27. Jousset C, Carron C, Boureux A, Quang CT, Oury C, Dusanter-Fourt I, Charon M, Levin J, Bernard O, Ghysdael J: A domain of TEL conserved in a subset of ETS proteins defines a specific oligomerization interface essential to the mitogenic properties of the TEL-PDGFR beta oncoprotein. Embo J 1997, 16(1):69-82.
28. Simon JA, Tamkun JW: Programming off and on states in chromatin: mechanisms of Polycomb and trithorax group complexes. Curr Opin Genet Dev 2002, 12(2):210-218.
29. Brock HW, van Lohuizen M: The Polycomb group - no longer an exclusive club? Curr Opin Genet Dev 2001, 11(2):175-181.
30. Francis NJ, Kingston RE: Mechanisms of transcriptional memory. Nat Rev Mol Cell Biol 2001, 2(6):409-421.
31. Kim CA, Gingery M, Pilpa RM, Bowie JU: The SAM domain of polyhomeotic forms a helical polymer. Nat Struct Biol 2002, 9(6):453-457.
32. Kozak M: Interpreting cDNA sequences: some insights from studies on translation. Mamm Genome 1996, 7(8):563-574.
33. Keen TJ, Mohamed MD, McKibbin M, Rashid Y, Jafri H, Maumenee IH, Inglehearn CF: Identification of a locus (LCA9) for Leber's congenital amaurosis on chromosome 1p36. Eur J Hum Genet 2003, 11(5):420-423.
34. Hicks D, Barnstable CJ: Different rhodopsin monoclonal antibodies reveal different binding patterns on developing and adult rat retina. J Histochem Cytochem 1987, 35(11):1317-1328.
35. Ahmad I, Redmond LJ, Barnstable CJ: Developmental and tissue-specific expression of the rod photoreceptor cGMP-gated ion channel gene. Biochem Biophys Res Commun 1990, 173(1):463-470.
36. Ni M, Yamaki K, Kikuchi T, Ferrick M, Shinohara T, Nussenblatt RB, Chan CC: Developmental expression of S-antigen in fetal human and rat eye. Curr Eye Res 1992, 11(3):219-229.
37. Stepanik PL, Lerious V, McGinnis JF: Developmental appearance, species and tissue specificity of mouse 23-kDa, a retinal calcium-binding protein (recoverin). Exp Eye Res 1993, 57(2):189-197.
38. Blackshaw S, Snyder SH: Developmental expression pattern of phototransduction components in mammalian pineal implies a light-sensing function. J Neurosci 1997, 17(21):8074-8082.
39. Peterson AJ, Kyba M, Bornemann D, Morgan K, Brock HW, Simon J: A domain shared by the Polycomb group proteins Scm and ph mediates heterotypic and homotypic interactions. Mol Cell Biol 1997, 17(11):6683-6692.
40. Yoshida S, Mears AJ, Friedman JS, Carter T, He S, Oh E, Jing Y, Farjo R, Fleury G, Barlow C, Hero AO, Swaroop A: Expression profiling of the developing and mature Nrl-/- mouse retina: identification of retinal disease candidates and transcriptional regulatory targets of Nrl. Hum Mol Genet 2004, 13(14):1487-1503.
41. Graves BJ, Gillespie ME, McIntosh LP: DNA binding by the ETS domain. Nature 1996, 384(6607):322.
42. Kehle J, Beuchle D, Treuheit S, Christen B, Kennison JA, Bienz M, Muller J: dMi-2, a hunchback-interacting protein that functions in polycomb repression. Science 1998, 282(5395):1897-1900.
43. Wood LD, Irvin BJ, Nucifora G, Luce KS, Hiebert SW: Small ubiquitin-like modifier conjugation regulates nuclear export of TEL, a putative tumor suppressor. Proc Natl Acad Sci U S A 2003, 100(6):3257-3262.
44. Roseman RR, Morgan K, Mallin DR, Roberson R, Parnell TJ, Bornemann DJ, Simon JA, Geyer PK: Long-range repression by multiple polycomb group (PcG) proteins targeted by fusion to a defined DNA-binding domain in Drosophila. Genetics 2001, 158(1):291-307.
45. Boccuni P, MacGrogan D, Scandura JM, Nimer SD: The human L(3)MBT polycomb group protein is a transcriptional repressor and interacts physically and functionally with TEL (ETV6). J Biol Chem 2003, 278(17):15412-15420.
46. Bannister AJ, Schneider R, Kouzarides T: Histone methylation: dynamic or static? Cell 2002, 109(7):801-806.
47. Shao Z, Raible F, Mollaaghababa R, Guyon JR, Wu CT, Bender W, Kingston RE: Stabilization of chromatin structure by PRC1, a Polycomb complex. Cell 1999, 98(1):37-46.
48. Morrow EM, Furukawa T, Cepko CL: Vertebrate photoreceptor cell development and disease. Trends Cell Biol 1998, 8(9):353-358.
49. Furukawa T, Kozak CA, Cepko CL: rax, a novel paired-type homeobox gene, shows expression in the anterior neural fold and developing retina. Proc Natl Acad Sci U S A 1997, 94(7):3088-3093.
50. Tanaka T, Inazu T, Yamada K, Myint Z, Keng VW, Inoue Y, Taniguchi N, Noguchi T: cDNA cloning and expression of rat homeobox gene, Hex, and functional characterization of the protein. Biochem J 1999, 339 ( Pt 1):111-117.