Transition in the temperature-dependence of GFP fluorescence: From proton wires to proton exit

Biophysical Journal

Volumn 90, Issue 3, 2006, Pages 1009-1018

  Leiderman, Pavel ^a   Huppert, Dan ^a   Agmon, Noam ^b  

^a TEL AVIV UNIVERSITY   (Israel)

^b HEBREW UNIVERSITY OF JERUSALEM   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

AMPHOLYTE; ANION; GREEN FLUORESCENT PROTEIN; PROTON;

ARTICLE; CONFORMATIONAL TRANSITION; DIFFUSION; FLUORESCENCE; KINETICS; QUANTITATIVE ANALYSIS; ROTATION; TEMPERATURE DEPENDENCE; TEMPERATURE MEASUREMENT;

EID: 33645693765     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.105.069393     Document Type: Article

References (37)

1. Phillips, G. N., Jr. 1997. Structure and dynamics of green fluorescent protein. Curr. Opin. Struct. Biol. 7:821-827.
2. Tsien, R. Y. 1998. The green fluorescent protein. Annu. Rev. Biochem. 67:509-544.
3. Remington, S. J. 2000. Structural basis for understanding spectral variations in green fluorescent protein. Meth. Enzymol. 305:196-210.
4. Zimmer, M. 2002. Green fluorescent protein (GFP): applications, structure, and related photophysical behavior. Chem. Rev. 102:759-781.
5. Yang, F., L. G. Moss, and G. N. Phillips, Jr. 1996. The molecular structure of green fluorescent protein. Nat. Biotechnol. 14:1246-1251.
6. Örmo, M., A. B. Cubitt, K. Kallio, L. A. Gross, R. Y. Tsien, and S. J. Remington. 1996. Crystal structure of the Aequorea victoria green fluorescent protein. Science. 273:1392-1395.
7. Chattoraj, M., B. A. King, G. U. Bublitz, and S. G. Boxer. 1996. Ultrafast excited state dynamics in green fluorescent protein: multiple states and proton transfer. Proc. Natl. Acad. Sci. USA. 93:8362-8367.
8. Lossau, H., A. Kummer, R. Heinecke, F. Pöllinger-Dammer, C. Kompa, G. Bieser, T. Jonsson, C. M. Silva, M. M. Yang, D. C. Youvan, and M. E. Michel-Beyerle. 1996. Time-resolved spectroscopy of wild-type and mutant green fluorescent proteins reveals excited state deprotonation consistent with fluorophore-protein interactions. Chem. Phys. 213:1-16.
9. Striker, G., V. Subramaniam, C. A. M. Seidel, and A. Volkmer. 1999. Photochromicity and fluorescence lifetimes of green fluorescent protein. J. Phys. Chem. B. 103:8612-8617.
10. Winkler, K., J. Lindner, H. Bürsing, and P. Vöhringer. 2002. Ultrafast Raman-induced Kerr effect of water: single molecule versus collective motions. J. Chem. Phys. 113:4674-4682.
11. Leiderman, P., M. Ben-Ziv, L. Genosar, D. Huppert, K. M. Solntsev, and L. M. Tolbert. 2004. Study of the long-time fluorescence tail of the green fluorescent protein. J. Phys. Chem. B. 108:8043-8053.
12. Pines, E., D. Huppert, and N. Agmon. 1988. Geminate recombination in excited-state proton transfer reactions: numerical solution of the Debye-Smoluchowski equation with back-reaction boundary conditions. J. Chem. Phys. 88:5620-5630.
13. Agmon, N. 2005. Elementary steps in excited-state proton transfer. J. Phys. Chem. A. 109:13-35.
14. Brejc, K., T. K. Sixma, P. A. Kitts, S. R. Kain, R. Y. Tsien, M. Ormö, and S. J. Remington. 1997. Structural basis for dual excitation and photoisomerization of the Aequorea victoria green fluorescent protein. Proc. Natl. Acad. Sci. USA. 94:2306-2311.
15. Palm, G. J., A. Zdanov, G. A. Gaitanaris, R. Stauber, G. N. Pavlakis, and A. Wlodawer. 1997. The structural basis for spectral variations in green fluorescent protein. Nat. Struct. Biol. 4:361-365.
16. Agmon, N. 2005. Proton pathways in green fluorescence protein. Biophys. J. 88:2452-2461.
17. Agmon, N. 1984. Diffusion with back-reaction. J. Chem. Phys. 81:2811-2817.
18. Krissinel', E. B. and N. Agmon. 1996. Spherical symmetric diffusion problem. J. Comput. Chem. 17:1085-1098.
19. Agmon, N. 2005. Reduced parameter set determinable from geminate kinetics. Chem. Phys. Lett. 417:530-534.
20. Abramowitz, M., and I. A. Stegun, editors. 1970. Handbook of Mathematical Functions. Dover, New York.
21. Agmon, N., E. Pines, and D. Huppert. 1988. Geminate recombination in proton-transfer reactions. II. Comparison of diffusional and kinetic schemes. J. Chem. Phys. 88:5631-5638.
22. Agmon, N., and A. Szabo. 1990. Theory of reversible diffusion-influenced reactions. J. Chem. Phys. 92:5270-5284.
23. Kim, H., K. J. Shin, and N. Agmon. 1999. Excited-state reversible geminate recombination with quenching in one dimension. J. Chem. Phys. 111:3791-3799.
24. Kim, H., K. J. Shin, and N. Agmon. 2001. Diffusion-influenced reversible geminate recombination in one dimension. II. Effect of a constant field. J. Chem. Phys. 114:3905-3912.
25. Kim, H., and K. J. Shin. 2004. Diffusion-influenced reversible geminate recombination in one dimension. III. Field effect on the excited-state reaction. J. Chem. Phys. 120:9142-9150.
26. Decoursey, T. E. 2003. Voltage-gated proton channels and other proton transfer pathways. Physiol. Rev. 83:475-579.
27. Frank, R. A. W., C. M. Titman, J. V. Pratap, B. F. Luisi, and R. N. Perham. 2004. A molecular switch and proton wire synchronize the active sites in thiamine enzymes. Science. 306:872-876.
28. a values of the green fluorescent protein chromophore from hybrid quantum-classical calculations. J. Phys. Chem. B. 108:477-489.
29. Bardez, E. 1999. Excited-state proton transfer in bifunctional compounds. Isr. J. Chem. 39:319-332.
30. Voityuk, A. A., M.-E. Michel-Beyerle, and N. Rösch. 1998. Quantum chemical modeling of structure and absorption spectra of the chromophore in green fluorescent proteins. Chem. Phys. 231:13-25.
31. Weber, W., V. Helms, J. A. McCammon, and P. W. Langhoff. 1999. Shedding light on the dark and weakly fluorescent states of green fluorescent proteins. Proc. Natl. Acad. Sci. USA. 96:6177-6182.
32. Mallik, R., J. B. Udgaonkar, and G. Krishnamoorthy. 2003. Kinetics of proton transfer in a green fluorescent protein: a laser-induced pH jump study. Proc. Indian Acad. Sci. (Chem. Sci.) 115:307-317.
33. Saxena, A. M., J. B. Udgaonkar, and G. Krishnamoorthy. 2005. Protein dynamics control proton transfer from bulk solvent to protein interior: a case study with a green fluorescent protein. Protein Sci. 14:1787-1799.
34. Stoner-Ma, D., A. A. Jaye, P. Matousek, M. Towrie, S. R. Meech, and P. J. Tonge. 2005. Observation of excited-state proton transfer in green fluorescent protein using ultrafast vibrational spectroscopy. J. Am. Chem. Soc. 127:2864-2865.
35. Kummer, A. D., J. Wiehler, H. Rehaber, C. Kompa, B. Steipe, and M. E. Michel-Beyerle. 2000. Effects of threonine 203 replacements on excited-state dynamics and fluorescence properties of the green fluorescent protein (GFP). J. Phys. Chem. B. 104:4791-4798.
36. Luo, T.-J. M., R. Soong, E. Lan, B. Dunn, and C. Montemagno. 2005. Photo-induced proton gradients and ATP biosynthesis produced by vesicles encapsulated in a silica matrix. Nature Mater. 4:220-224.
37. 2+-regulated photoproteins: structural insight into the bioluminescence mechanism. Acc. Chem. Res. 37:405-415.