-
1
-
-
24644481914
-
Regulation of a Bacillus subtilis mobile genetic element by intercellular signalling and the global DNA damage response
-
. .
-
Auchtung J.M. Lee C.A. Monson R.E. Lehman A.P. Grossman A.D. 2005 Regulation of a Bacillus subtilis mobile genetic element by intercellular signalling and the global DNA damage response. Proc Natl Acad Sci USA 102 12554 12559.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 12554-12559
-
-
Auchtung, J.M.1
Lee, C.A.2
Monson, R.E.3
Lehman, A.P.4
Grossman, A.D.5
-
2
-
-
0036223625
-
Microarray analysis of the Bacillus subtilis K-state: Genome-wide expression changes dependent on ComK
-
.
-
Berka R.M. Hahn J. Albano M. Draskovic I. Persuh M. Cui X. et al. 2002 Microarray analysis of the Bacillus subtilis K-state: genome-wide expression changes dependent on ComK. Mol Microbiol 43 1331 1345.
-
(2002)
Mol Microbiol
, vol.43
, pp. 1331-1345
-
-
Berka, R.M.1
Hahn, J.2
Albano, M.3
Draskovic, I.4
Persuh, M.5
Cui, X.6
-
3
-
-
21144458703
-
Synergistic regulation of competence development in Bacillus subtilis by two Rap-Phr systems
-
.
-
Bongiorni C. Ishikawa S. Stephenson S. Ogasawara N. Perego M. 2005 Synergistic regulation of competence development in Bacillus subtilis by two Rap-Phr systems. J Bacteriol 187 4353 4361.
-
(2005)
J Bacteriol
, vol.187
, pp. 4353-4361
-
-
Bongiorni, C.1
Ishikawa, S.2
Stephenson, S.3
Ogasawara, N.4
Perego, M.5
-
5
-
-
0026495787
-
A series of shuttle vectors for Bacillus subtilis and Escherichia coli
-
.
-
Bruckner R. 1992 A series of shuttle vectors for Bacillus subtilis and Escherichia coli. Gene 122 187 192.
-
(1992)
Gene
, vol.122
, pp. 187-192
-
-
Bruckner, R.1
-
6
-
-
0035205302
-
Correlation between Bacillus subtilis scoC phenotype and gene expression determined using microarrays for transcriptome analysis
-
.
-
Caldwell R. Sapolsky R. Weyler W. Maile R.R. Causey S.C. Ferrari E. 2001 Correlation between Bacillus subtilis scoC phenotype and gene expression determined using microarrays for transcriptome analysis. J Bacteriol 183 7329 7340.
-
(2001)
J Bacteriol
, vol.183
, pp. 7329-7340
-
-
Caldwell, R.1
Sapolsky, R.2
Weyler, W.3
Maile, R.R.4
Causey, S.C.5
Ferrari, E.6
-
7
-
-
0141454873
-
TPR-mediated interaction of RapC with ComA inhibits response regulator-DNA binding for competence development in Bacillus subtilis
-
.
-
Core L. Perego M. 2003 TPR-mediated interaction of RapC with ComA inhibits response regulator-DNA binding for competence development in Bacillus subtilis. Mol Microbiol 49 1509 1522.
-
(2003)
Mol Microbiol
, vol.49
, pp. 1509-1522
-
-
Core, L.1
Perego, M.2
-
10
-
-
0035900752
-
The Bacillus subtilis competence transcription factor, ComK, overrides LexA-imposed transcriptional inhibition without physically displacing LexA
-
.
-
Hamoen L.W. Haijema B. Bijlsma J.J. Venema G. Lovett C.M. 2001 The Bacillus subtilis competence transcription factor, ComK, overrides LexA-imposed transcriptional inhibition without physically displacing LexA. J Biol Chem 276 42901 42907.
-
(2001)
J Biol Chem
, vol.276
, pp. 42901-42907
-
-
Hamoen, L.W.1
Haijema, B.2
Bijlsma, J.J.3
Venema, G.4
Lovett, C.M.5
-
11
-
-
0037115816
-
Improving the predictive value of the competence transcription factor (ComK) binding site in Bacillus subtilis using a genomic approach
-
.
-
Hamoen L.W. Smits W.K. de Jong A. Holsappel S. Kuipers O.P. 2002 Improving the predictive value of the competence transcription factor (ComK) binding site in Bacillus subtilis using a genomic approach. Nucleic Acids Res 30 5517 5528.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 5517-5528
-
-
Hamoen, L.W.1
Smits, W.K.2
De Jong, A.3
Holsappel, S.4
Kuipers, O.P.5
-
12
-
-
0034943360
-
Involvement of stringent factor RelA in expression of the alkaline protease gene aprE in Bacillus subtilis
-
.
-
Hata M. Ogura M. Tanaka T. 2001 Involvement of stringent factor RelA in expression of the alkaline protease gene aprE in Bacillus subtilis. J Bacteriol 183 4648 4651.
-
(2001)
J Bacteriol
, vol.183
, pp. 4648-4651
-
-
Hata, M.1
Ogura, M.2
Tanaka, T.3
-
13
-
-
0037323928
-
Differential analysis of DNA microarray gene expression data
-
.
-
Hatfield G.W. Hung S.P. Baldi P. 2003 Differential analysis of DNA microarray gene expression data. Mol Microbiol 47 871 877.
-
(2003)
Mol Microbiol
, vol.47
, pp. 871-877
-
-
Hatfield, G.W.1
Hung, S.P.2
Baldi, P.3
-
15
-
-
0034118606
-
Proteomics, DNA arrays and the analysis of still unknown regulons and unknown proteins of Bacillus subtilis and pathogenic gram-positive bacteria
-
.
-
Hecker M. Engelmann S. 2000 Proteomics, DNA arrays and the analysis of still unknown regulons and unknown proteins of Bacillus subtilis and pathogenic gram-positive bacteria. Int J Med Microbiol 290 123 134.
-
(2000)
Int J Med Microbiol
, vol.290
, pp. 123-134
-
-
Hecker, M.1
Engelmann, S.2
-
16
-
-
0036197675
-
Rok (YkuW) regulates genetic competence in Bacillus subtilis by directly repressing comK
-
.
-
Hoa T.T. Tortosa P. Albano M. Dubnau D. 2002 Rok (YkuW) regulates genetic competence in Bacillus subtilis by directly repressing comK. Mol Microbiol 43 15 26.
-
(2002)
Mol Microbiol
, vol.43
, pp. 15-26
-
-
Hoa, T.T.1
Tortosa, P.2
Albano, M.3
Dubnau, D.4
-
17
-
-
0037036398
-
Biochemical characterization of aspartyl phosphate phosphatase interaction with a phosphorylated response regulator and its inhibition by a pentapeptide
-
.
-
Ishikawa S. Core L. Perego M. 2002 Biochemical characterization of aspartyl phosphate phosphatase interaction with a phosphorylated response regulator and its inhibition by a pentapeptide. J Biol Chem 277 20483 20489.
-
(2002)
J Biol Chem
, vol.277
, pp. 20483-20489
-
-
Ishikawa, S.1
Core, L.2
Perego, M.3
-
18
-
-
0033985918
-
Differential processing of propeptide inhibitors of Rap phosphatase in Bacillus subtilis
-
.
-
Jiang M. Grau R. Perego M. 2000 Differential processing of propeptide inhibitors of Rap phosphatase in Bacillus subtilis. J Bacteriol 182 303 310.
-
(2000)
J Bacteriol
, vol.182
, pp. 303-310
-
-
Jiang, M.1
Grau, R.2
Perego, M.3
-
19
-
-
0041664046
-
Swarming motility in undomesticated Bacillus subtilis
-
.
-
Kearns D.B. Losick R. 2003 Swarming motility in undomesticated Bacillus subtilis. Mol Microbiol 49 581 590.
-
(2003)
Mol Microbiol
, vol.49
, pp. 581-590
-
-
Kearns, D.B.1
Losick, R.2
-
20
-
-
1942468855
-
Genes governing swarming in Bacillus subtilis and evidence for a phase variation mechanism controlling surface motility
-
.
-
Kearns D.B. Chu F. Rudner R. Losick R. 2004 Genes governing swarming in Bacillus subtilis and evidence for a phase variation mechanism controlling surface motility. Mol Microbiol 52 357 369.
-
(2004)
Mol Microbiol
, vol.52
, pp. 357-369
-
-
Kearns, D.B.1
Chu, F.2
Rudner, R.3
Losick, R.4
-
22
-
-
0042838043
-
Rapid surface motility in Bacillus subtilis is dependent on extracellular surfactin and potassium ion
-
.
-
Kinsinger R.F. Shirk M.C. Fall R. 2003 Rapid surface motility in Bacillus subtilis is dependent on extracellular surfactin and potassium ion. J Bacteriol 185 5627 5631.
-
(2003)
J Bacteriol
, vol.185
, pp. 5627-5631
-
-
Kinsinger, R.F.1
Shirk, M.C.2
Fall, R.3
-
24
-
-
0029006115
-
Salt stress is an environmental signal affecting degradative enzyme synthesis in Bacillus subtilis
-
.
-
Kunst F. Rapoport G. 1995 Salt stress is an environmental signal affecting degradative enzyme synthesis in Bacillus subtilis. J Bacteriol 177 2403 2407.
-
(1995)
J Bacteriol
, vol.177
, pp. 2403-2407
-
-
Kunst, F.1
Rapoport, G.2
-
25
-
-
0000885909
-
Signal transduction network controlling degradative enzyme synthesis and competence in Bacillus subtilis
-
. In. American Society for Microbiology Press Washington, DC pp.
-
Kunst F. Msadek T. Rapoport G. 1994 Signal transduction network controlling degradative enzyme synthesis and competence in Bacillus subtilis. In Regulation of Bacterial Differentiation. Piggot P.J. Moran C.P. Jr Youngman P. eds Washington, DC American Society for Microbiology Press pp. 1 20.
-
(1994)
Regulation of Bacterial Differentiation.*Piggot P.J.*Moran C.P. Jr*Youngman P. Eds
, pp. 1-20
-
-
Kunst, F.1
Msadek, T.2
Rapoport, G.3
-
27
-
-
0030830216
-
An exported peptide functions intracellularly to contribute to cell density signaling in B. subtilis
-
.
-
Lazazzera B.A. Solomon J.M. Grossman A.D. 1997 An exported peptide functions intracellularly to contribute to cell density signaling in B. subtilis. Cell 89 917 925.
-
(1997)
Cell
, vol.89
, pp. 917-925
-
-
Lazazzera, B.A.1
Solomon, J.M.2
Grossman, A.D.3
-
28
-
-
0032833083
-
An autoregulatory circuit affecting peptide signaling in Bacillus subtilis
-
.
-
Lazazzera B.A. Kurtser I.G. McQuade R.S. Grossman A.D. 1999 An autoregulatory circuit affecting peptide signaling in Bacillus subtilis. J Bacteriol 181 5193 5200.
-
(1999)
J Bacteriol
, vol.181
, pp. 5193-5200
-
-
Lazazzera, B.A.1
Kurtser, I.G.2
McQuade, R.S.3
Grossman, A.D.4
-
29
-
-
0028071783
-
Overproduction, isolation, and DNA-binding characteristics of Xre, the repressor protein from the Bacillus subtilis defective prophage PBSX
-
.
-
McDonnell G.E. McConnell D.J. 1994 Overproduction, isolation, and DNA-binding characteristics of Xre, the repressor protein from the Bacillus subtilis defective prophage PBSX. J Bacteriol 176 5831 5834.
-
(1994)
J Bacteriol
, vol.176
, pp. 5831-5834
-
-
McDonnell, G.E.1
McConnell, D.J.2
-
30
-
-
0034903176
-
Control of a family of phosphatase regulatory genes (phr) by the alternate sigma factor sigma-H of Bacillus subtilis
-
.
-
McQuade R.S. Comella N. Grossman A.D. 2001 Control of a family of phosphatase regulatory genes (phr) by the alternate sigma factor sigma-H of Bacillus subtilis. J Bacteriol 183 4905 4909.
-
(2001)
J Bacteriol
, vol.183
, pp. 4905-4909
-
-
McQuade, R.S.1
Comella, N.2
Grossman, A.D.3
-
31
-
-
0347126296
-
DBTBS: Database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics
-
.
-
Makita Y. Nakao M. Ogasawara N. Nakai K. 2004 DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics. Nucleic Acids Res 32 D75 D77.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Makita, Y.1
Nakao, M.2
Ogasawara, N.3
Nakai, K.4
-
32
-
-
0025243444
-
Isolation and phosphorylation of the Bacillus subtilis degS and degU gene products
-
.
-
Mukai K. Kawata M. Tanaka T. 1990 Isolation and phosphorylation of the Bacillus subtilis degS and degU gene products. J Biol Chem 265 20000 20006.
-
(1990)
J Biol Chem
, vol.265
, pp. 20000-20006
-
-
Mukai, K.1
Kawata, M.2
Tanaka, T.3
-
33
-
-
0027318149
-
Mutational analysis of the regulatory region of the srfA operon in Bacillus subtilis
-
.
-
Nakano M.M. Zuber P. 1993 Mutational analysis of the regulatory region of the srfA operon in Bacillus subtilis. J Bacteriol 175 3188 3191.
-
(1993)
J Bacteriol
, vol.175
, pp. 3188-3191
-
-
Nakano, M.M.1
Zuber, P.2
-
35
-
-
0030809022
-
A new Bacillus subtilis gene, med, encodes a positive regulator of comK
-
.
-
Ogura M. Ohshiro Y. Hirao S. Tanaka T. 1997 A new Bacillus subtilis gene, med, encodes a positive regulator of comK. J Bacteriol 179 6244 6253.
-
(1997)
J Bacteriol
, vol.179
, pp. 6244-6253
-
-
Ogura, M.1
Ohshiro, Y.2
Hirao, S.3
Tanaka, T.4
-
36
-
-
0035883922
-
DNA microarray analysis of Bacillus subtilis DegU, ComA and PhoP regulons: An approach to comprehensive analysis of B. subtilis two-component regulatory systems
-
.
-
Ogura M. Yamaguchi H. Yoshida K. Fujita Y. Tanaka T. 2001 DNA microarray analysis of Bacillus subtilis DegU, ComA and PhoP regulons: an approach to comprehensive analysis of B. subtilis two-component regulatory systems. Nucleic Acids Res 29 3804 3813.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 3804-3813
-
-
Ogura, M.1
Yamaguchi, H.2
Yoshida, K.3
Fujita, Y.4
Tanaka, T.5
-
37
-
-
0036229860
-
Whole-genome analysis of genes regulated by the Bacillus subtilis competence transcription factor ComK
-
.
-
Ogura M. Yamaguchi H. Fujita Y. Kobayasi K. Ogasawara N. Tanaka T. 2002 Whole-genome analysis of genes regulated by the Bacillus subtilis competence transcription factor ComK. J Bacteriol 184 6244 6253.
-
(2002)
J Bacteriol
, vol.184
, pp. 6244-6253
-
-
Ogura, M.1
Yamaguchi, H.2
Fujita, Y.3
Kobayasi, K.4
Ogasawara, N.5
Tanaka, T.6
-
38
-
-
0141677727
-
Binding of response regulator DegU to the aprE promoter is inhibited by RapG, which is counteracted by extracellular PhrG in Bacillus subtilis
-
.
-
Ogura. M. Shimane K. Asai K. Ogasawara N. Tanaka T. 2003 Binding of response regulator DegU to the aprE promoter is inhibited by RapG, which is counteracted by extracellular PhrG in Bacillus subtilis. Mol Microbiol 49 1685 1697.
-
(2003)
Mol Microbiol
, vol.49
, pp. 1685-1697
-
-
Ogura., M.1
Shimane, K.2
Asai, K.3
Ogasawara, N.4
Tanaka, T.5
-
39
-
-
0030844587
-
A peptide export-import control circuit modulating bacterial development regulates protein phosphatases of the phosphorelay
-
.
-
Perego M. 1997 A peptide export-import control circuit modulating bacterial development regulates protein phosphatases of the phosphorelay. Proc Natl Acad Sci USA 94 8612 8617.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 8612-8617
-
-
Perego, M.1
-
40
-
-
0003111321
-
Self-signalling by Phr peptides modulates Bacillus subtilis development
-
. In. American Society for Microbiology Press Washington, DC pp.
-
Perego M. 1999 Self-signalling by Phr peptides modulates Bacillus subtilis development. In Cell-Cell Signaling in Bacteria. Dunny G.M. Winans S.C. (eds). Washington, DC American Society for Microbiology Press pp. 243 258.
-
(1999)
Cell-Cell Signaling in Bacteria.*Dunny G.M.*Winans S.C. (Eds) .
, pp. 243-258
-
-
Perego, M.1
-
41
-
-
0029883587
-
Cell-cell communication regulates the effects of protein aspartate phosphatases on the phosphorelay controlling development in Bacillus subtilis
-
.
-
Perego M. Hoch J.A. 1996 Cell-cell communication regulates the effects of protein aspartate phosphatases on the phosphorelay controlling development in Bacillus subtilis. Proc Natl Acad Sci USA 93 1549 1553.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 1549-1553
-
-
Perego, M.1
Hoch, J.A.2
-
42
-
-
0026031219
-
The oligopeptide transport system of Bacillus subtilis plays a role in the initiation of sporulation
-
.
-
Perego M. Higgins C.F. Pearce S.R. Gallagher M.P. Hoch J.A. 1991 The oligopeptide transport system of Bacillus subtilis plays a role in the initiation of sporulation. Mol Microbiol 5 173 185.
-
(1991)
Mol Microbiol
, vol.5
, pp. 173-185
-
-
Perego, M.1
Higgins, C.F.2
Pearce, S.R.3
Gallagher, M.P.4
Hoch, J.A.5
-
43
-
-
0141735901
-
The extracellular Phr peptide-Rap phosphatase signaling circuit of Bacillus subtilis
-
.
-
Pottathil M. Lazazzera B. 2003 The extracellular Phr peptide-Rap phosphatase signaling circuit of Bacillus subtilis. Front Biosci 8 32 45.
-
(2003)
Front Biosci
, vol.8
, pp. 32-45
-
-
Pottathil, M.1
Lazazzera, B.2
-
44
-
-
0027318148
-
ComA, a phosphorylated response regulator protein of Bacillus subtilis, binds to the promoter region of srfA
-
.
-
Roggiani M. Dubnau D. 1993 ComA, a phosphorylated response regulator protein of Bacillus subtilis, binds to the promoter region of srfA. J Bacteriol 175 3182 3187.
-
(1993)
J Bacteriol
, vol.175
, pp. 3182-3187
-
-
Roggiani, M.1
Dubnau, D.2
-
45
-
-
12244264445
-
Sequence-independent upstream DNA-α-CTD interactions strongly stimulate Escherichia coli RNA polymerase-lacUV5 promoter association
-
.
-
Ross W. Gourse L. 2005 Sequence-independent upstream DNA-α-CTD interactions strongly stimulate Escherichia coli RNA polymerase-lacUV5 promoter association. Proc Natl Acad Sci USA 102 291 296.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 291-296
-
-
Ross, W.1
Gourse, L.2
-
46
-
-
0025971265
-
The spo0K locus of Bacillus subtilis is homologous to the oligopeptide permease locus and is required for sporulation and competence
-
.
-
Rudner D.Z. LeDeaux J.R. Ireton K. Grossman A.D. 1991 The spo0K locus of Bacillus subtilis is homologous to the oligopeptide permease locus and is required for sporulation and competence. J Bacteriol 173 1388 1398.
-
(1991)
J Bacteriol
, vol.173
, pp. 1388-1398
-
-
Rudner, D.Z.1
Ledeaux, J.R.2
Ireton, K.3
Grossman, A.D.4
-
47
-
-
9144249626
-
Mutational analysis of the helix-turn-helix region of Bacillus subtilis response regulator DegU, and identification of cis-acting sequences for DegU in the aprE and comK promoters
-
.
-
Shimane K. Ogura M. 2004 Mutational analysis of the helix-turn-helix region of Bacillus subtilis response regulator DegU, and identification of cis-acting sequences for DegU in the aprE and comK promoters. J Biochem 136 387 397.
-
(2004)
J Biochem
, vol.136
, pp. 387-397
-
-
Shimane, K.1
Ogura, M.2
-
48
-
-
0343648366
-
Construction of a single copy integration vector and its use in analysis of regulation of the trp operon of Bacillus subtilis
-
.
-
Shimotsu H. Henner D. 1986 Construction of a single copy integration vector and its use in analysis of regulation of the trp operon of Bacillus subtilis. Gene 33 103 119.
-
(1986)
Gene
, vol.33
, pp. 103-119
-
-
Shimotsu, H.1
Henner, D.2
-
49
-
-
0029959768
-
Purification and characterization of an extracellular peptide factor that affects two different developmental pathways in Bacillus subtilis
-
.
-
Solomon J.M. Lazazzera B.A. Grossman A.D. 1996 Purification and characterization of an extracellular peptide factor that affects two different developmental pathways in Bacillus subtilis. Genes Dev 10 2014 2024.
-
(1996)
Genes Dev
, vol.10
, pp. 2014-2024
-
-
Solomon, J.M.1
Lazazzera, B.A.2
Grossman, A.D.3
-
50
-
-
1142286474
-
Mechanism of transcription activation at the comG promoter by the competence transcription factor ComK of Bacillus subtilis
-
.
-
Susanna K.A. van der Werff A.F. den Hengst C.D. Calles B. Salas M. Venema G. et al. 2004 Mechanism of transcription activation at the comG promoter by the competence transcription factor ComK of Bacillus subtilis. J Bacteriol 186 1120 1128.
-
(2004)
J Bacteriol
, vol.186
, pp. 1120-1128
-
-
Susanna, K.A.1
Van Der Werff, A.F.2
Den Hengst, C.D.3
Calles, B.4
Salas, M.5
Venema, G.6
-
51
-
-
0033956060
-
The COG database: A tool for genome-scale analysis of protein functions and evolution
-
.
-
Tatusov R.L. Galperin M.Y. Natale D.A. Koonin E.V. 2000 The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res 28 33 36.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 33-36
-
-
Tatusov, R.L.1
Galperin, M.Y.2
Natale, D.A.3
Koonin, E.V.4
-
52
-
-
0035253527
-
Combined transcriptome and proteome analysis as a powerful approach to study genes under glucose repression in Bacillus subtilis
-
Yoshida K.-I. Kobayashi K. Miwa Y. Kang C.-M. Matsunaga M. Yamaguchi H. et al. 2001 Combined transcriptome and proteome analysis as a powerful approach to study genes under glucose repression in Bacillus subtilis. Nucleic Acids Res 29 683 692.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 683-692
-
-
Yoshida, K.-I.1
Kobayashi, K.2
Miwa, Y.3
Kang, C.-M.4
Matsunaga, M.5
Yamaguchi, H.6
|