-
1
-
-
0001768901
-
Genetic exchange and homologous recombination
-
Sonenshein, A.L., Hoch, J.A. and Losick, R. (eds), American Society for Microbiology, Washington,D.C
-
Dubnau,D. (1993) Genetic exchange and homologous recombination. In Sonenshein,A.L., Hoch,J.A. and Losick,R. (eds), Bacillus subtilis and Other Gram-Positive Bacteria. American Society for Microbiology, Washington,D.C., pp. 555-584.
-
(1993)
Bacillus Subtilis and Other Gram-Positive Bacteria
, pp. 555-584
-
-
Dubnau, D.1
-
2
-
-
0028940059
-
comK encodes the competence transcription factor, the key regulatory protein for competence development in Bacillus subtilis
-
van-Sinderen,D., Luttinger,A., Kong,L., Dubnau,D., Venema,G. and Hamoen,L. (1995) comK encodes the competence transcription factor, the key regulatory protein for competence development in Bacillus subtilis. Mol. Microbiol., 15, 455-462.
-
(1995)
Mol. Microbiol.
, vol.15
, pp. 455-462
-
-
van-Sinderen, D.1
Luttinger, A.2
Kong, L.3
Dubnau, D.4
Venema, G.5
Hamoen, L.6
-
3
-
-
0029747160
-
Regulatory inputs for the synthesis of ComK, the competence transcription factor of Bacillus subtilis
-
Hahn,J., Luttinger,A. and Dubnau,D. (1996) Regulatory inputs for the synthesis of ComK, the competence transcription factor of Bacillus subtilis. Mol. Microbiol., 21, 763-775.
-
(1996)
Mol. Microbiol.
, vol.21
, pp. 763-775
-
-
Hahn, J.1
Luttinger, A.2
Dubnau, D.3
-
4
-
-
0028945952
-
Expression of the ATP-dependent deoxyribonuclease of Bacillus subtilis is under competence-mediated control
-
Haijema,B.J., Hamoen,L.W., Kooistra,J., Venema,G. and van-Sinderen,D. (1995) Expression of the ATP-dependent deoxyribonuclease of Bacillus subtilis is under competence-mediated control. Mol. Microbiol., 15, 203-211.
-
(1995)
Mol. Microbiol.
, vol.15
, pp. 203-211
-
-
Haijema, B.J.1
Hamoen, L.W.2
Kooistra, J.3
Venema, G.4
van-Sinderen, D.5
-
5
-
-
0029835935
-
Regulated expression of the dinR and recA genes during competence development and SOS induction in Bacillus subtilis
-
Haijema,B.J., van-Sinderen,D., Winterling,K., Kooistra,J., Venema,G. and Hamoen,L.W. (1996) Regulated expression of the dinR and recA genes during competence development and SOS induction in Bacillus subtilis. Mol. Microbiol., 22, 75-85.
-
(1996)
Mol. Microbiol.
, vol.22
, pp. 75-85
-
-
Haijema, B.J.1
van-Sinderen, D.2
Winterling, K.3
Kooistra, J.4
Venema, G.5
Hamoen, L.W.6
-
6
-
-
0032524020
-
The competence transcription factor of Bacillus subtilis recognizes short A/T-rich sequences arranged in a unique, flexible pattern along the DNA helix
-
Hamoen,L.W., Van-Werkhoven,A.F., Bijlsma,J.J., Dubnau,D. and Venema,G. (1998) The competence transcription factor of Bacillus subtilis recognizes short A/T-rich sequences arranged in a unique, flexible pattern along the DNA helix. Genes Dev., 12, 1539-1550.
-
(1998)
Genes Dev.
, vol.12
, pp. 1539-1550
-
-
Hamoen, L.W.1
Van-Werkhoven, A.F.2
Bijlsma, J.J.3
Dubnau, D.4
Venema, G.5
-
7
-
-
0004270170
-
-
John Wiley & Sons, New York
-
Ausubel,F.M., Brent,R., Kingston,R.E., Moore,D.D., Seidham,J.G., Smith,J.A. and Struhl,K. (1998) Current Protocols in Molecular Biology. John Wiley & Sons, New York.
-
(1998)
Current Protocols in Molecular Biology
-
-
Ausubel, F.M.1
Brent, R.2
Kingston, R.E.3
Moore, D.D.4
Seidham, J.G.5
Smith, J.A.6
Struhl, K.7
-
8
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook,J., Fritsch,E.F. and Maniatis,T. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1989)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
9
-
-
0012580170
-
Fate of transforming deoxyribonucleic acid in Bacillus subtilis
-
Venema,G., Pritchard,R.H. and Venema-Schroder,T. (1965) Fate of transforming deoxyribonucleic acid in Bacillus subtilis. J. Bacteriol., 89, 1250-1255.
-
(1965)
J. Bacteriol.
, vol.89
, pp. 1250-1255
-
-
Venema, G.1
Pritchard, R.H.2
Venema-Schroder, T.3
-
10
-
-
0015335342
-
Ultraviolet inactivation and excision-repair in Bacillus subtilis. I. Construction and characterization of a transformable eightfold auxotrophic strain and two ultraviolet-sensitive derivatives
-
Bron,S. and Venema,G. (1971) Ultraviolet inactivation and excision-repair in Bacillus subtilis. I. Construction and characterization of a transformable eightfold auxotrophic strain and two ultraviolet-sensitive derivatives. Mutat. Res., 15, 1-10.
-
(1971)
Mutat. Res.
, vol.15
, pp. 1-10
-
-
Bron, S.1
Venema, G.2
-
11
-
-
0029590029
-
Antibiotic-resistance cassettes for Bacillus subtilis
-
Guerout-Fleury,A.M., Shazand,K., Frandsen,N. and Stragier,P. (1995) Antibiotic-resistance cassettes for Bacillus subtilis. Gene, 167, 335-336.
-
(1995)
Gene
, vol.167
, pp. 335-336
-
-
Guerout-Fleury, A.M.1
Shazand, K.2
Frandsen, N.3
Stragier, P.4
-
12
-
-
0030731108
-
The complete genome sequence of the gram-positive bacterium Bacillus subtilis
-
Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G., Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert,S. et al. (1997) The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature, 390, 249-256.
-
(1997)
Nature
, vol.390
, pp. 249-256
-
-
Kunst, F.1
Ogasawara, N.2
Moszer, I.3
Albertini, A.M.4
Alloni, G.5
Azevedo, V.6
Bertero, M.G.7
Bessieres, P.8
Bolotin, A.9
Borchert, S.10
-
13
-
-
0027185296
-
A Bacillus subtilis large ORF coding for a polypeptide highly similar to polyketide synthases
-
Scotti,C., Piatti,M., Cuzzoni,A., Perani,P., Tognoni,A., Grandi,G., Galizzi,A. and Albertini,A.M. (1993) A Bacillus subtilis large ORF coding for a polypeptide highly similar to polyketide synthases. Gene, 130, 65-71.
-
(1993)
Gene
, vol.130
, pp. 65-71
-
-
Scotti, C.1
Piatti, M.2
Cuzzoni, A.3
Perani, P.4
Tognoni, A.5
Grandi, G.6
Galizzi, A.7
Albertini, A.M.8
-
14
-
-
0002492795
-
Plasmids
-
Harwood,C.R. and Cutting,S.M. (eds), John Wiley & Sons Ltd, Chichester, UK
-
Bron,S. (1990) Plasmids. In Harwood,C.R. and Cutting,S.M. (eds), Molecular Biological Methods for Bacillus. John Wiley & Sons Ltd, Chichester, UK, pp. 75-174.
-
(1990)
Molecular Biological Methods for Bacillus
, pp. 75-174
-
-
Bron, S.1
-
15
-
-
0025822233
-
Distance-dependent translational coupling and interference in Lactococcus lactis
-
van de Guchte,M., Kok,J. and Venema,G. (1991) Distance-dependent translational coupling and interference in Lactococcus lactis. Mol. Gen. Genet., 227, 65-71.
-
(1991)
Mol. Gen. Genet.
, vol.227
, pp. 65-71
-
-
van de Guchte, M.1
Kok, J.2
Venema, G.3
-
16
-
-
0032524715
-
Structural requirements for DNA binding of GCM proteins
-
Schreiber,J., Enderich,J. and Wegner,M. (1998) Structural requirements for DNA binding of GCM proteins. Nucleic Acids Res., 26, 2337-2343.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 2337-2343
-
-
Schreiber, J.1
Enderich, J.2
Wegner, M.3
-
17
-
-
0036693009
-
Transcriptome analysis and related databases of Lactococcus lactis
-
Kuipers,O.P., de Jong,A., Baerends,R.J,S., van Hijum,S.A.F.T., Zomer,A.L., Karsens,H.A., den Hengst,C.D., Kramer,N.E., Buist,G. and Kok,J. (2002) Transcriptome analysis and related databases of Lactococcus lactis. Antonie Van Leeuwenhoek, 82, 113-122.
-
(2002)
Antonie Van Leeuwenhoek
, vol.82
, pp. 113-122
-
-
Kuipers, O.P.1
de Jong, A.2
Baerends, R.J.S.3
van Hijum, S.A.F.T.4
Zomer, A.L.5
Karsens, H.A.6
den Hengst, C.D.7
Kramer, N.E.8
Buist, G.9
Kok, J.10
-
18
-
-
0026490544
-
Use of gel retardation to analyze protein-nucleic acid interactions
-
Lane,D., Prentki,P. and Chandler,M. (1992) Use of gel retardation to analyze protein-nucleic acid interactions. Microbiol. Rev., 56, 509-528.
-
(1992)
Microbiol. Rev.
, vol.56
, pp. 509-528
-
-
Lane, D.1
Prentki, P.2
Chandler, M.3
-
19
-
-
0035827588
-
Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12
-
Long,A.D., Mangalam,H.J., Chan,B.Y., Tolleri,L., Hatfield,G.W. and Baldi,P. (2001) Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12. J. Biol. Chem., 276, 19937-19944.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 19937-19944
-
-
Long, A.D.1
Mangalam, H.J.2
Chan, B.Y.3
Tolleri, L.4
Hatfield, G.W.5
Baldi, P.6
-
20
-
-
0034948896
-
A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
-
Baldi,P. and Long,A.D. (2001) A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics., 17, 509-519.
-
(2001)
Bioinformatics.
, vol.17
, pp. 509-519
-
-
Baldi, P.1
Long, A.D.2
-
21
-
-
0031830304
-
A molecular switch controlling competence and motility: Competence regulatory factors ComS, MecA and ComK control sigmaD-dependent gene expression in Bacillus subtilis
-
Liu,J. and Zuber,P. (1998) A molecular switch controlling competence and motility: competence regulatory factors ComS, MecA and ComK control sigmaD-dependent gene expression in Bacillus subtilis. J. Bacteriol., 180, 4243-4251.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 4243-4251
-
-
Liu, J.1
Zuber, P.2
-
22
-
-
0036510360
-
The bdbDC operon of Bacillus subtilis encodes thiol-disulphide oxidoreductases required for competence development
-
Meima,R., Eschevins,C., Fillinger,S., Bolhuis,A., Hamoen,L.W., Dorenbos,R., Quax,W.J., van Dijl,J.M., Provvedi,R., Chen,I. et al. (2002) The bdbDC operon of Bacillus subtilis encodes thiol-disulphide oxidoreductases required for competence development. J. Biol. Chem., 277, 6994-7001.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 6994-7001
-
-
Meima, R.1
Eschevins, C.2
Fillinger, S.3
Bolhuis, A.4
Hamoen, L.W.5
Dorenbos, R.6
Quax, W.J.7
van Dijl, J.M.8
Provvedi, R.9
Chen, I.10
-
23
-
-
0036223625
-
Microarray analysis of the Bacillus subtilis K-state: Genome-wide expression changes dependent on ComK
-
Berka,R.M., Hahn,J., Albano,M., Draskovic,I., Persuh,M., Cui,X., Sloma,A., Widner,W. and Dubnau,D. (2002) Microarray analysis of the Bacillus subtilis K-state: genome-wide expression changes dependent on ComK. Mol. Microbiol., 43, 1331-1345.
-
(2002)
Mol. Microbiol.
, vol.43
, pp. 1331-1345
-
-
Berka, R.M.1
Hahn, J.2
Albano, M.3
Draskovic, I.4
Persuh, M.5
Cui, X.6
Sloma, A.7
Widner, W.8
Dubnau, D.9
-
24
-
-
0036229860
-
Whole-genome analysis of genes regulated by the Bacillus subtilis competence transcription factor ComK
-
Ogura,M., Yamaguchi,H., Kobayashi,K., Ogasawara,N., Fujita,Y. and Tanaka,T. (2002) Whole-genome analysis of genes regulated by the Bacillus subtilis competence transcription factor ComK. J. Bacteriol., 184, 2344-2351.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 2344-2351
-
-
Ogura, M.1
Yamaguchi, H.2
Kobayashi, K.3
Ogasawara, N.4
Fujita, Y.5
Tanaka, T.6
-
25
-
-
0035900752
-
The Bacillus subtilis competence transcription factor, ComK, overrides LexA-imposed transcriptional inhibition without physically displacing LexA
-
Hamoen,L.W., Haijema,B., Bijlsma,J.J., Venema,G. and Lovett,C.M. (2001) The Bacillus subtilis competence transcription factor, ComK, overrides LexA-imposed transcriptional inhibition without physically displacing LexA. J. Biol. Chem., 276, 42901-42907.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 42901-42907
-
-
Hamoen, L.W.1
Haijema, B.2
Bijlsma, J.J.3
Venema, G.4
Lovett, C.M.5
-
26
-
-
0034813268
-
Sigma A recognition sites in the Bacillus subtilis genome
-
Jarmer,H., Larsen,T.S., Krogh,A., Saxild,H.H., Brunak,S. and Knudsen,S. (2001) Sigma A recognition sites in the Bacillus subtilis genome. Microbiology, 147, 2417-2424.
-
(2001)
Microbiology
, vol.147
, pp. 2417-2424
-
-
Jarmer, H.1
Larsen, T.S.2
Krogh, A.3
Saxild, H.H.4
Brunak, S.5
Knudsen, S.6
-
27
-
-
0036197675
-
Rok (YkUW) regulates genetic competence in Bacillus subtilis by directly repressing comK
-
Hoa,T.T., Tortosa,P., Albano,M. and Dubnau,D. (2002) Rok (YkUW) regulates genetic competence in Bacillus subtilis by directly repressing comK. Mol. Microbiol., 43, 15-26.
-
(2002)
Mol. Microbiol.
, vol.43
, pp. 15-26
-
-
Hoa, T.T.1
Tortosa, P.2
Albano, M.3
Dubnau, D.4
-
28
-
-
0033032415
-
DNA bending and wrapping around RNA polymerase: A 'revolutionary' model describing transcriptional mechanisms
-
Coulombe,B. and Burton,Z.F. (1999) DNA bending and wrapping around RNA polymerase: a 'revolutionary' model describing transcriptional mechanisms. Microbiol. Mol. Biol. Rev., 63, 457-478.
-
(1999)
Microbiol. Mol. Biol. Rev.
, vol.63
, pp. 457-478
-
-
Coulombe, B.1
Burton, Z.F.2
-
29
-
-
0027372572
-
Characterization of comE, a late competence operon of Bacillus subtilis required for the binding and uptake of transforming DNA
-
Hahn,J., Inamine,G., Kozlov,Y. and Dubnau,D. (1993) Characterization of comE, a late competence operon of Bacillus subtilis required for the binding and uptake of transforming DNA. Mol. Microbiol., 10, 99-111.
-
(1993)
Mol. Microbiol.
, vol.10
, pp. 99-111
-
-
Hahn, J.1
Inamine, G.2
Kozlov, Y.3
Dubnau, D.4
-
30
-
-
0028929877
-
Differential expression of two closely related deoxyribonuclease genes, nucA and nucB, in Bacillus subtilis
-
van Sinderen,D., Kiewiet,R. and Venema,G. (1995) Differential expression of two closely related deoxyribonuclease genes, nucA and nucB, in Bacillus subtilis. Mol. Microbiol., 15, 213-223.
-
(1995)
Mol. Microbiol.
, vol.15
, pp. 213-223
-
-
van Sinderen, D.1
Kiewiet, R.2
Venema, G.3
-
31
-
-
0030960672
-
Transcriptional activation by recruitment
-
Ptashne,M. and Gann,A. (1997) Transcriptional activation by recruitment. Nature, 386, 569-577.
-
(1997)
Nature
, vol.386
, pp. 569-577
-
-
Ptashne, M.1
Gann, A.2
-
32
-
-
0033567215
-
Bacterial promoter architecture: Subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase alpha subunit
-
Estrem,S.T., Ross,W., Gaal,T., Chen,Z.W., Niu,W., Ebright,R.H. and Gourse,R.L. (1999) Bacterial promoter architecture: subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase alpha subunit. Genes Dev., 13, 2134-2147.
-
(1999)
Genes Dev.
, vol.13
, pp. 2134-2147
-
-
Estrem, S.T.1
Ross, W.2
Gaal, T.3
Chen, Z.W.4
Niu, W.5
Ebright, R.H.6
Gourse, R.L.7
-
33
-
-
0031000203
-
RNA polymerase sigma factor determines start-site selection but is not required for upstream promoter element activation on heteroduplex (bubble) templates
-
Fredrick,K. and Helmann,J.D. (1997) RNA polymerase sigma factor determines start-site selection but is not required for upstream promoter element activation on heteroduplex (bubble) templates. Proc. Natl Acad. Sci. USA, 94, 4982-4987.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 4982-4987
-
-
Fredrick, K.1
Helmann, J.D.2
-
34
-
-
0030920499
-
Binding and transport of transforming DNA by Bacillus subtilis: The role of type-IV pilin-like proteins-a review
-
Dubnau,D. (1997) Binding and transport of transforming DNA by Bacillus subtilis: the role of type-IV pilin-like proteins-a review. Gene, 192, 191-198.
-
(1997)
Gene
, vol.192
, pp. 191-198
-
-
Dubnau, D.1
-
35
-
-
0035008924
-
NucA is required for DNA cleavage during transformation of Bacillus subtilis
-
Provvedi,R., Chen,I. and Dubnau,D. (2001) NucA is required for DNA cleavage during transformation of Bacillus subtilis. Mol. Microbiol., 40, 634-644.
-
(2001)
Mol. Microbiol.
, vol.40
, pp. 634-644
-
-
Provvedi, R.1
Chen, I.2
Dubnau, D.3
-
36
-
-
0027169036
-
comF, a Bacillus subtilis late competence locus, encodes a protein similar to ATP-dependent RNA/DNA helicases
-
Londono-Vallejo,J.A. and Dubnau,D. (1993) comF, a Bacillus subtilis late competence locus, encodes a protein similar to ATP-dependent RNA/DNA helicases. Mol. Microbiol., 9, 119-131.
-
(1993)
Mol. Microbiol.
, vol.9
, pp. 119-131
-
-
Londono-Vallejo, J.A.1
Dubnau, D.2
-
37
-
-
0028341302
-
Molecular cloning and sequence of comK, a gene required for genetic competence in Bacillus subtilis
-
van-Sinderen,D., ten-Berge,A., Hayema,B.J., Hamoen,L. and Venema,G. (1994) Molecular cloning and sequence of comK, a gene required for genetic competence in Bacillus subtilis. Mol. Microbiol., 11, 695-703.
-
(1994)
Mol. Microbiol.
, vol.11
, pp. 695-703
-
-
van-Sinderen, D.1
ten-Berge, A.2
Hayema, B.J.3
Hamoen, L.4
Venema, G.5
-
38
-
-
0024670302
-
Competence-specific induction of the Bacillus subtilis RecA protein analog: Evidence for dual regulation of a recombination protein
-
Lovett,C.M., Love,P.E. and Yasbin,R.E. (1989) Competence-specific induction of the Bacillus subtilis RecA protein analog: evidence for dual regulation of a recombination protein. J. Bacteriol., 171, 2318-2322.
-
(1989)
J. Bacteriol.
, vol.171
, pp. 2318-2322
-
-
Lovett, C.M.1
Love, P.E.2
Yasbin, R.E.3
-
39
-
-
0030809022
-
A new Bacillus subtilis gene, med, encodes a positive regulator of comK
-
Ogura,M., Ohshiro,Y., Hirao,S. and Tanaka,T. (1997) A new Bacillus subtilis gene, med, encodes a positive regulator of comK. J. Bacteriol., 179, 6244-6253.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 6244-6253
-
-
Ogura, M.1
Ohshiro, Y.2
Hirao, S.3
Tanaka, T.4
-
40
-
-
0033887723
-
Bacillus subtilis comZ (yjzA) negatively affects expression of comG but not comK
-
Ogura,M. and Tanaka,T. (2000) Bacillus subtilis comZ (yjzA) negatively affects expression of comG but not comK. J. Bacteriol., 182, 4992-4994.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 4992-4994
-
-
Ogura, M.1
Tanaka, T.2
|