Accounting for strain-specific differences during RTG target gene regulation in Saccharomyces cerevisiae

FEMS Yeast Research

Volumn 6, Issue 1, 2006, Pages 112-119

  Dilova, Ivanka ^a   Powers, Ted ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Mitochondria; Mks1p; Rapamycin; Rtg3p; Signal transduction; TOR kinase

Indexed keywords

RAPAMYCIN; TARGET OF RAPAMYCIN KINASE;

ARTICLE; CODON; CORRELATION ANALYSIS; FUNGAL STRAIN; GENE CONTROL; GENE DELETION; GENE EXPRESSION; GENE TARGETING; HEAT SHOCK; NONHUMAN; NONSENSE MUTATION; PROTEIN DEPHOSPHORYLATION; PROTEIN PHOSPHORYLATION; SACCHAROMYCES CEREVISIAE; SIGNAL TRANSDUCTION; STRAIN DIFFERENCE;

ANTIFUNGAL AGENTS; BASIC HELIX-LOOP-HELIX LEUCINE ZIPPER TRANSCRIPTION FACTORS; CULTURE MEDIA; GENE EXPRESSION REGULATION, FUNGAL; MUTATION; PHOSPHORYLATION; REPRESSOR PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SIGNAL TRANSDUCTION; SIROLIMUS; SPECIES SPECIFICITY; TRANSCRIPTION FACTORS;

SACCHAROMYCES CEREVISIAE;

EID: 33645088916     PISSN: 15671356     EISSN: 15671364     Source Type: Journal    
DOI: 10.1111/j.1567-1364.2005.00008.x     Document Type: Article

References (23)

1. Beck T Hall MN 1999 The TOR signalling pathway controls nuclear localization of nutrient-regulated transcription factors Nature 402 689 692
2. Butow RA Avadhani NG 2004 Mitochondrial signaling the retrograde response Mol Cell 14 1 15
3. Cardenas ME Cutler NS Lorenz MC Di Como CJ Heitman J 1999 The TOR signaling cascade regulates gene expression in response to nutrients Genes Dev 13 3271 3279
4. Crespo JL Hall MN 2003 Elucidating TOR signaling and rapamycin action lessons from Saccharomyces cerevisiae Microbiol Mol Biol Rev 66 579 591
5. Dilova I Aronova S Chen C-Y Powers T 2004 Tor signaling and nutrient-based signals converge on Mks1p phosphorylation to regulate expression of Rtg1p/Rtg3p-dependent genes J Biol Chem 279 46527 46535
6. Dilova I Chen C-Y Powers T 2002 Mks1 in concert with TOR signaling negatively regulates RTG target gene expression in S. cerevisiae Curr Biol 12 389 395
7. Hardwick JS Kuruvilla FG Tong JK Shamji AF Schreiber SL 1999 Rapamycin-modulated transcription defines the subset of nutrient-sensitive signaling pathways directly controlled by the Tor proteins Proc Natl Acad Sci USA 96 14866 14870
8. Komeili A. Wedaman KP O'Shea EO Powers T 2000 Mechanism of metabolic control target of rapamycin signaling links nitrogen quality to the activity of the Rtg1 and Rtg3 transcription factors J Cell Biol 151 863 878
9. Liao X Butow RA 1993 RTG1 and RTG2 two yeast genes required for a novel path of communication from mitochondria to the nucleus Cell 72 61 71
10. Liu Z Sekito T Epstein CB Butow RA 2001 RTG-dependent mitochondria to nucleus signaling is negatively regulated by the seven WD-repeat protein Lst8p EMBO J 20 7209 7219
11. Longtine MS McKenzie A III. Demarini DJ Shah NG Wach A Brachat A Philippsen P Pringle JR 1998 Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae Yeast 14 953 961
12. Martin DE Hall MN 2005 The expanding TOR signaling network Curr Opin Cell Biol 17 158 166
13. Nasmyth K Adolf G Lydall D Seddon A 1990 The identification of a second cell cycle control on the HO promoter in yeast cell cycle regulation of SW15 nuclear entry Cell 62 631 647
14. Powers T Dilova I Chen CY Wedaman K 2004 Yeast TOR signaling a mechanism for metabolic regulation Curr Top Microbiol Immunol 279 39 51
15. Powers T Walter P 1999 Regulation of ribosome biogenesis by the rapamycin-sensitive TOR-signaling pathway in Saccharomycescerevisiae Mol Biol Cell 10 987 1000
16. Rohde JR Cardenas ME 2004 Nutrient signaling through TOR kinases controls gene expression and cellular differentiation in fungi Curr Top Microbiol Immunol 279 53 72
17. Sekito T Liu Z Thornton J Butow RA 2002 RTG-dependent mitochondria-to-nucleus signaling is regulated by Mks1 and is linked to formation of yeast prion [URE3] Mol Biol Cell 13 795 804
18. Sekito T Thorton J Butow R 2000 Mitochondria-to-nuclear signaling is regulated by the subcellular localization of the transcription factors Rtg1p and Rtg3p Mol Biol Cell 11 2103 2115
19. Shamji AF Kuruvilla FG Schreiber SL 2000 Partitioning the transcriptional program induced by rapamycin among the effectors of the Tor proteins Curr Biol 10 1574 1581
20. Shamji AF Nghiem P Schreiber SL 2003 Integration of growth factor and nutrient signaling implications for cancer biology Mol Cell 12 271 280
21. Sikorski RS Heiter P 1989 A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae Genetics 122 19 27
22. Tate JJ Cooper TG 2003 Tor1,2 regulation of retrograde gene expression in S. cerevisiae derives indirectly as a consequence of alterations in ammonia metabolism J Biol Chem 278 36924 36933
23. Tate JJ Cox KH Rai R Cooper TG 2002 Mks1p is required for negative regulation of retrograde gene expressioin in Saccharomyces cerevisiae but does not affect nitrogen catabolite repression-sensitive gene expression J Biol Chem 277 20477 20482